RNA–Protein interactions for RNA: ENST00000497638.2

VPS45-210, Transcript of vacuolar protein sorting 45 homolog, humanhuman

TSL 2

Gene VPS45, Length 1,135 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS45-210ENST00000497638 AEBP2Q6ZN18 517 aaPredicted RBP33.03■■■□□ 2.88
VPS45-210ENST00000497638 CHIC1Q5VXU3 224 aa31.58■■■□□ 2.65
VPS45-210ENST00000497638 SENP3Q9H4L4 574 aaPredicted RBP28.2■■■□□ 2.1
VPS45-210ENST00000497638 PHF23Q9BUL5 403 aaPredicted RBP27.87■■■□□ 2.05
VPS45-210ENST00000497638 FOXD1Q16676 465 aa26.24■■□□□ 1.79
VPS45-210ENST00000497638 PLPPR3Q6T4P5 718 aa25.37■■□□□ 1.65
VPS45-210ENST00000497638 PPP6R1Q9UPN7 881 aa24.67■■□□□ 1.54
VPS45-210ENST00000497638 ADRA2BP18089 450 aa24.64■■□□□ 1.54
VPS45-210ENST00000497638 PIAS4Q8N2W9 510 aaPredicted RBP24.62■■□□□ 1.53
VPS45-210ENST00000497638 MSH5O43196 834 aa24.52■■□□□ 1.52
VPS45-210ENST00000497638 POTEDQ86YR6 584 aa23.58■■□□□ 1.37
VPS45-210ENST00000497638 SCAF1Q9H7N4 1312 aaKnown RBP22.6■■□□□ 1.21
VPS45-210ENST00000497638 MAPK8IP2Q13387 824 aaPredicted RBP22.57■■□□□ 1.2
VPS45-210ENST00000497638 DMRT2Q9Y5R5 561 aa22.37■■□□□ 1.17
VPS45-210ENST00000497638 PPP4R3CPQ6ZMV5 832 aa22.25■■□□□ 1.15
VPS45-210ENST00000497638 CNKSR2Q8WXI2 1034 aa21.79■■□□□ 1.08
VPS45-210ENST00000497638 HOXD11P31277 338 aaPredicted RBP21.6■■□□□ 1.05
VPS45-210ENST00000497638 DCAF8L1A6NGE4 600 aa21.58■■□□□ 1.05
VPS45-210ENST00000497638 RNF216Q9NWF9 866 aaPredicted RBP21.52■■□□□ 1.04
VPS45-210ENST00000497638 NCBP3Q53F19 620 aaKnown RBP21.5■■□□□ 1.03
VPS45-210ENST00000497638 NPM3O75607 178 aaKnown RBP21.13■□□□□ 0.97
VPS45-210ENST00000497638 CACNB1Q02641 598 aaPredicted RBP20.96■□□□□ 0.95
VPS45-210ENST00000497638 KCNA4P22459 653 aa20.9■□□□□ 0.94
VPS45-210ENST00000497638 RNF39Q9H2S5 420 aa20.89■□□□□ 0.93
VPS45-210ENST00000497638 DNAJC5BQ9UF47 199 aa20.79■□□□□ 0.92
VPS45-210ENST00000497638 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.69■□□□□ 0.9
VPS45-210ENST00000497638 C1QBPQ07021 282 aaKnown RBP20.63■□□□□ 0.89
VPS45-210ENST00000497638 U3KPZ7 1027 aaPredicted RBP20.19■□□□□ 0.82
VPS45-210ENST00000497638 SLC4A2P04920 1241 aa20.1■□□□□ 0.81
VPS45-210ENST00000497638 CAPN15O75808 1086 aa19.9■□□□□ 0.78
VPS45-210ENST00000497638 SPINK5Q9NQ38 1064 aaPredicted RBP19.87■□□□□ 0.77
VPS45-210ENST00000497638 SLC4A1APQ9BWU0 796 aaKnown RBP19.81■□□□□ 0.76
VPS45-210ENST00000497638 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.75■□□□□ 0.75
VPS45-210ENST00000497638 HNRNPUL2Q1KMD3 747 aaKnown RBP19.75■□□□□ 0.75
VPS45-210ENST00000497638 APLP2Q06481 763 aa19.74■□□□□ 0.75
VPS45-210ENST00000497638 DSG3P32926 999 aa19.65■□□□□ 0.74
VPS45-210ENST00000497638 SAMD1Q6SPF0 538 aaPredicted RBP19.63■□□□□ 0.73
VPS45-210ENST00000497638 TRHP20396 242 aaPredicted RBP19.62■□□□□ 0.73
VPS45-210ENST00000497638 MYCNP04198 464 aaPredicted RBP19.56■□□□□ 0.72
VPS45-210ENST00000497638 ZNF219Q9P2Y4 722 aaPredicted RBP19.55■□□□□ 0.72
VPS45-210ENST00000497638 NISCHQ9Y2I1 1504 aa19.46■□□□□ 0.71
VPS45-210ENST00000497638 FOXD4L1Q9NU39 408 aa19.46■□□□□ 0.71
VPS45-210ENST00000497638 ABCB7O75027 752 aa19.43■□□□□ 0.7
VPS45-210ENST00000497638 ZBTB22O15209 634 aa19.17■□□□□ 0.66
VPS45-210ENST00000497638 POLA2Q14181 598 aa19.11■□□□□ 0.65
VPS45-210ENST00000497638 ATF5Q9Y2D1 282 aaPredicted RBP19.06■□□□□ 0.64
VPS45-210ENST00000497638 ATXN8OSP0DMR3 200 aa18.82■□□□□ 0.6
VPS45-210ENST00000497638 RBM42Q9BTD8 480 aaKnown RBP18.79■□□□□ 0.6
VPS45-210ENST00000497638 ZBTB12Q9Y330 459 aaPredicted RBP18.73■□□□□ 0.59
VPS45-210ENST00000497638 POTEHQ6S545 545 aa18.54■□□□□ 0.56
VPS45-210ENST00000497638 CSRNP3Q8WYN3 585 aa18.5■□□□□ 0.55
VPS45-210ENST00000497638 OSCARQ8IYS5 282 aa18.47■□□□□ 0.55
VPS45-210ENST00000497638 EHMT2Q96KQ7 1210 aa18.44■□□□□ 0.54
VPS45-210ENST00000497638 FBLN2P98095 1184 aa18.39■□□□□ 0.53
VPS45-210ENST00000497638 AKT1S1Q96B36 256 aa18.38■□□□□ 0.53
VPS45-210ENST00000497638 CHRDL2Q6WN34 429 aa18.28■□□□□ 0.52
VPS45-210ENST00000497638 REM2Q8IYK8 340 aaPredicted RBP18.2■□□□□ 0.5
VPS45-210ENST00000497638 MKRN4PQ13434 485 aaPredicted RBP18.18■□□□□ 0.5
VPS45-210ENST00000497638 SPDYE2BA6NHP3 402 aa18.14■□□□□ 0.49
VPS45-210ENST00000497638 SPDYE6P0CI01 402 aa18.14■□□□□ 0.49
VPS45-210ENST00000497638 SPDYE2Q495Y8 402 aa18.14■□□□□ 0.49
VPS45-210ENST00000497638 ABCC9O60706 1549 aa18.03■□□□□ 0.48
VPS45-210ENST00000497638 ZNF692Q9BU19 519 aaPredicted RBP18.02■□□□□ 0.48
VPS45-210ENST00000497638 PITPNM1O00562 1244 aa18■□□□□ 0.47
VPS45-210ENST00000497638 PIP4P2Q8N4L2 257 aa17.88■□□□□ 0.45
VPS45-210ENST00000497638 SSUH2Q9Y2M2 353 aa17.88■□□□□ 0.45
VPS45-210ENST00000497638 CLEC11AQ9Y240 323 aa17.83■□□□□ 0.44
VPS45-210ENST00000497638 SPDYE1Q8NFV5 336 aaPredicted RBP17.81■□□□□ 0.44
VPS45-210ENST00000497638 FXR2P51116 673 aaKnown RBP eCLIP17.79■□□□□ 0.44
VPS45-210ENST00000497638 PABPN1Q86U42 306 aaKnown RBP eCLIP17.73■□□□□ 0.43
VPS45-210ENST00000497638 CCDC180Q9P1Z9 1646 aa17.69■□□□□ 0.42
VPS45-210ENST00000497638 PRKAR2AP13861 404 aaKnown RBP17.58■□□□□ 0.4
VPS45-210ENST00000497638 HAX1O00165 279 aa17.57■□□□□ 0.4
VPS45-210ENST00000497638 PRR29P0C7W0 189 aa17.54■□□□□ 0.4
VPS45-210ENST00000497638 SPDYE4A6NLX3 237 aa17.49■□□□□ 0.39
VPS45-210ENST00000497638 SP7Q8TDD2 431 aaPredicted RBP17.47■□□□□ 0.39
VPS45-210ENST00000497638 CHADLQ6NUI6 762 aa17.42■□□□□ 0.38
VPS45-210ENST00000497638 STAG3Q9UJ98 1225 aa17.3■□□□□ 0.36
VPS45-210ENST00000497638 EVX2Q03828 476 aa17.28■□□□□ 0.36
VPS45-210ENST00000497638 C19orf67A6NJJ6 358 aa17.2■□□□□ 0.34
VPS45-210ENST00000497638 FARP1Q9Y4F1 1045 aaPredicted RBP17.16■□□□□ 0.34
VPS45-210ENST00000497638 CREBZFQ9NS37 354 aa17.08■□□□□ 0.32
VPS45-210ENST00000497638 RB1CC1Q8TDY2 1594 aa17.03■□□□□ 0.32
VPS45-210ENST00000497638 CD44P16070 742 aaKnown RBP17.03■□□□□ 0.32
VPS45-210ENST00000497638 PROM2Q8N271 834 aa16.98■□□□□ 0.31
VPS45-210ENST00000497638 GABBR2O75899 941 aa16.94■□□□□ 0.3
VPS45-210ENST00000497638 NPM1P06748 294 aaKnown RBP eCLIP16.85■□□□□ 0.29
VPS45-210ENST00000497638 ZRANB1Q9UGI0 708 aa16.84■□□□□ 0.29
VPS45-210ENST00000497638 FKBP8Q14318 412 aa16.83■□□□□ 0.28
VPS45-210ENST00000497638 NACADO15069 1562 aa16.82■□□□□ 0.28
VPS45-210ENST00000497638 PAK3O75914 559 aaPredicted RBP16.78■□□□□ 0.28
VPS45-210ENST00000497638 MNX1P50219 401 aaPredicted RBP16.77■□□□□ 0.28
VPS45-210ENST00000497638 CLCN6P51797 869 aa16.75■□□□□ 0.27
VPS45-210ENST00000497638 PLEKHG5O94827 1062 aa16.72■□□□□ 0.27
VPS45-210ENST00000497638 MIER1Q8N108 512 aa16.72■□□□□ 0.27
VPS45-210ENST00000497638 ZNF579Q8NAF0 562 aaKnown RBP16.72■□□□□ 0.27
VPS45-210ENST00000497638 PLCD3Q8N3E9 789 aa16.61■□□□□ 0.25
VPS45-210ENST00000497638 UNC13AQ9UPW8 1703 aa16.6■□□□□ 0.25
VPS45-210ENST00000497638 DCBLD2Q96PD2 775 aa16.59■□□□□ 0.25
VPS45-210ENST00000497638 PHF12Q96QT6 1004 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms