RNA–Protein interactions for RNA: ENST00000497368.1

UBE3C-208, Transcript of ubiquitin protein ligase E3C, human

TSL 2

Gene UBE3C, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE3C-208	ENST00000497368	AEBP2	Q6ZN18	517 aa	Predicted RBP	20.18	■□□□□ 0.82
UBE3C-208	ENST00000497368	CHIC1	Q5VXU3	224 aa		19.48	■□□□□ 0.71
UBE3C-208	ENST00000497368	PHF23	Q9BUL5	403 aa	Predicted RBP	17.15	■□□□□ 0.34
UBE3C-208	ENST00000497368	SENP3	Q9H4L4	574 aa	Predicted RBP	17.09	■□□□□ 0.33
UBE3C-208	ENST00000497368	FOXD1	Q16676	465 aa		15.93	■□□□□ 0.14
UBE3C-208	ENST00000497368	PLPPR3	Q6T4P5	718 aa		15.72	■□□□□ 0.11
UBE3C-208	ENST00000497368	PPP6R1	Q9UPN7	881 aa		15.2	■□□□□ 0.02
UBE3C-208	ENST00000497368	ADRA2B	P18089	450 aa		15.18	■□□□□ 0.02
UBE3C-208	ENST00000497368	PIAS4	Q8N2W9	510 aa	Predicted RBP	14.97	□□□□□ -0.01
UBE3C-208	ENST00000497368	MSH5	O43196	834 aa		14.71	□□□□□ -0.05
UBE3C-208	ENST00000497368	POTED	Q86YR6	584 aa		14.36	□□□□□ -0.11
UBE3C-208	ENST00000497368	NISCH	Q9Y2I1	1504 aa		14.21	□□□□□ -0.13
UBE3C-208	ENST00000497368	PPP4R3CP	Q6ZMV5	832 aa		13.85	□□□□□ -0.19
UBE3C-208	ENST00000497368	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.84	□□□□□ -0.19
UBE3C-208	ENST00000497368	SCAF1	Q9H7N4	1312 aa	Known RBP	13.81	□□□□□ -0.2
UBE3C-208	ENST00000497368	DMRT2	Q9Y5R5	561 aa		13.62	□□□□□ -0.23
UBE3C-208	ENST00000497368	CNKSR2	Q8WXI2	1034 aa		13.48	□□□□□ -0.25
UBE3C-208	ENST00000497368	NCBP3	Q53F19	620 aa	Known RBP	13.4	□□□□□ -0.26
UBE3C-208	ENST00000497368	KCNA4	P22459	653 aa		13.35	□□□□□ -0.27
UBE3C-208	ENST00000497368	HOXD11	P31277	338 aa	Predicted RBP	13.26	□□□□□ -0.29
UBE3C-208	ENST00000497368	RNF216	Q9NWF9	866 aa	Predicted RBP	13.26	□□□□□ -0.29
UBE3C-208	ENST00000497368	NPM3	O75607	178 aa	Known RBP	13.25	□□□□□ -0.29
UBE3C-208	ENST00000497368	DCAF8L1	A6NGE4	600 aa		13.1	□□□□□ -0.31
UBE3C-208	ENST00000497368	CCDC180	Q9P1Z9	1646 aa		12.83	□□□□□ -0.36
UBE3C-208	ENST00000497368	DNAJC5B	Q9UF47	199 aa		12.8	□□□□□ -0.36
UBE3C-208	ENST00000497368	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.66	□□□□□ -0.38
UBE3C-208	ENST00000497368	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.66	□□□□□ -0.38
UBE3C-208	ENST00000497368	ABCC9	O60706	1549 aa		12.63	□□□□□ -0.39
UBE3C-208	ENST00000497368	RNF39	Q9H2S5	420 aa		12.61	□□□□□ -0.39
UBE3C-208	ENST00000497368	SLC4A2	P04920	1241 aa		12.57	□□□□□ -0.4
UBE3C-208	ENST00000497368		U3KPZ7	1027 aa	Predicted RBP	12.46	□□□□□ -0.41
UBE3C-208	ENST00000497368	CACNB1	Q02641	598 aa	Predicted RBP	12.43	□□□□□ -0.42
UBE3C-208	ENST00000497368	C1QBP	Q07021	282 aa	Known RBP	12.42	□□□□□ -0.42
UBE3C-208	ENST00000497368	FOXD4L1	Q9NU39	408 aa		12.3	□□□□□ -0.44
UBE3C-208	ENST00000497368	ZBTB22	O15209	634 aa		12.29	□□□□□ -0.44
UBE3C-208	ENST00000497368	MYCN	P04198	464 aa	Predicted RBP	12.21	□□□□□ -0.45
UBE3C-208	ENST00000497368	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.18	□□□□□ -0.46
UBE3C-208	ENST00000497368	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.16	□□□□□ -0.46
UBE3C-208	ENST00000497368	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.16	□□□□□ -0.46
UBE3C-208	ENST00000497368	CAPN15	O75808	1086 aa		12.13	□□□□□ -0.47
UBE3C-208	ENST00000497368	EHMT2	Q96KQ7	1210 aa		12.13	□□□□□ -0.47
UBE3C-208	ENST00000497368	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.12	□□□□□ -0.47
UBE3C-208	ENST00000497368	APLP2	Q06481	763 aa		12.07	□□□□□ -0.48
UBE3C-208	ENST00000497368	RB1CC1	Q8TDY2	1594 aa		12.06	□□□□□ -0.48
UBE3C-208	ENST00000497368	CSRNP3	Q8WYN3	585 aa		12.05	□□□□□ -0.48
UBE3C-208	ENST00000497368	TRH	P20396	242 aa	Predicted RBP	12.03	□□□□□ -0.48
UBE3C-208	ENST00000497368	UNC13A	Q9UPW8	1703 aa		12.03	□□□□□ -0.48
UBE3C-208	ENST00000497368	NACAD	O15069	1562 aa		12	□□□□□ -0.49
UBE3C-208	ENST00000497368	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.97	□□□□□ -0.49
UBE3C-208	ENST00000497368	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.97	□□□□□ -0.49
UBE3C-208	ENST00000497368	DSG3	P32926	999 aa		11.95	□□□□□ -0.5
UBE3C-208	ENST00000497368	ABCB7	O75027	752 aa		11.9	□□□□□ -0.5
UBE3C-208	ENST00000497368	MYO15B	Q96JP2	1530 aa		11.88	□□□□□ -0.51
UBE3C-208	ENST00000497368	BICRA	Q9NZM4	1560 aa		11.87	□□□□□ -0.51
UBE3C-208	ENST00000497368	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.85	□□□□□ -0.51
UBE3C-208	ENST00000497368	ATXN8OS	P0DMR3	200 aa		11.85	□□□□□ -0.51
UBE3C-208	ENST00000497368	POLA2	Q14181	598 aa		11.78	□□□□□ -0.52
UBE3C-208	ENST00000497368	DCAF1	Q9Y4B6	1507 aa		11.76	□□□□□ -0.53
UBE3C-208	ENST00000497368	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.67	□□□□□ -0.54
UBE3C-208	ENST00000497368	SCRIB	Q14160	1630 aa		11.64	□□□□□ -0.55
UBE3C-208	ENST00000497368	DCAF8L2	P0C7V8	631 aa		11.63	□□□□□ -0.55
UBE3C-208	ENST00000497368	SHROOM4	Q9ULL8	1493 aa		11.58	□□□□□ -0.56
UBE3C-208	ENST00000497368	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.5	□□□□□ -0.57
UBE3C-208	ENST00000497368	CC2D2A	Q9P2K1	1620 aa		11.49	□□□□□ -0.57
UBE3C-208	ENST00000497368	EIF4G1	Q04637	1599 aa	Known RBP	11.49	□□□□□ -0.57
UBE3C-208	ENST00000497368	MKRN4P	Q13434	485 aa	Predicted RBP	11.42	□□□□□ -0.58
UBE3C-208	ENST00000497368	FBLN2	P98095	1184 aa		11.41	□□□□□ -0.58
UBE3C-208	ENST00000497368	OSCAR	Q8IYS5	282 aa		11.41	□□□□□ -0.58
UBE3C-208	ENST00000497368	CECR2	Q9BXF3	1484 aa		11.36	□□□□□ -0.59
UBE3C-208	ENST00000497368	RBM42	Q9BTD8	480 aa	Known RBP	11.35	□□□□□ -0.59
UBE3C-208	ENST00000497368	SPDYE2B	A6NHP3	402 aa		11.2	□□□□□ -0.62
UBE3C-208	ENST00000497368	SPDYE6	P0CI01	402 aa		11.2	□□□□□ -0.62
UBE3C-208	ENST00000497368	SPDYE2	Q495Y8	402 aa		11.2	□□□□□ -0.62
UBE3C-208	ENST00000497368	AKT1S1	Q96B36	256 aa		11.18	□□□□□ -0.62
UBE3C-208	ENST00000497368	ZNF692	Q9BU19	519 aa	Predicted RBP	11.16	□□□□□ -0.62
UBE3C-208	ENST00000497368	SMARCA4	P51532	1647 aa		11.13	□□□□□ -0.63
UBE3C-208	ENST00000497368	POTEH	Q6S545	545 aa		11.11	□□□□□ -0.63
UBE3C-208	ENST00000497368	SSUH2	Q9Y2M2	353 aa		11.11	□□□□□ -0.63
UBE3C-208	ENST00000497368	REM2	Q8IYK8	340 aa	Predicted RBP	11.1	□□□□□ -0.63
UBE3C-208	ENST00000497368	NCAPD3	P42695	1498 aa		11.06	□□□□□ -0.64
UBE3C-208	ENST00000497368	ATAD2B	Q9ULI0	1458 aa		11.06	□□□□□ -0.64
UBE3C-208	ENST00000497368	HMGXB3	Q12766	1538 aa		11.05	□□□□□ -0.64
UBE3C-208	ENST00000497368	SPDYE4	A6NLX3	237 aa		11.05	□□□□□ -0.64
UBE3C-208	ENST00000497368	PEG3	Q9GZU2	1588 aa		11.05	□□□□□ -0.64
UBE3C-208	ENST00000497368	SMARCA2	P51531	1590 aa		11	□□□□□ -0.65
UBE3C-208	ENST00000497368	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11	□□□□□ -0.65
UBE3C-208	ENST00000497368	PITPNM1	O00562	1244 aa		11	□□□□□ -0.65
UBE3C-208	ENST00000497368	CHRDL2	Q6WN34	429 aa		10.99	□□□□□ -0.65
UBE3C-208	ENST00000497368	MROH2B	Q7Z745	1585 aa		10.99	□□□□□ -0.65
UBE3C-208	ENST00000497368	NES	P48681	1621 aa		10.94	□□□□□ -0.66
UBE3C-208	ENST00000497368	CLEC11A	Q9Y240	323 aa		10.93	□□□□□ -0.66
UBE3C-208	ENST00000497368	THOC2	Q8NI27	1593 aa	Known RBP	10.92	□□□□□ -0.66
UBE3C-208	ENST00000497368	SPDYE1	Q8NFV5	336 aa	Predicted RBP	10.92	□□□□□ -0.66
UBE3C-208	ENST00000497368	FKBP8	Q14318	412 aa		10.91	□□□□□ -0.66
UBE3C-208	ENST00000497368	BAZ1B	Q9UIG0	1483 aa	Known RBP	10.91	□□□□□ -0.66
UBE3C-208	ENST00000497368	WIZ	O95785	1651 aa		10.89	□□□□□ -0.67
UBE3C-208	ENST00000497368	KIF21A	Q7Z4S6	1674 aa		10.89	□□□□□ -0.67
UBE3C-208	ENST00000497368	CUX2	O14529	1486 aa		10.86	□□□□□ -0.67
UBE3C-208	ENST00000497368	LAMC3	Q9Y6N6	1575 aa		10.83	□□□□□ -0.68
UBE3C-208	ENST00000497368	PROM2	Q8N271	834 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms