RNA–Protein interactions for RNA: ENST00000496574.6

PKD1-222, Transcript of polycystin 1, transient receptor potential channel interacting, humanhuman

TSL 5

Gene PKD1, Length 4,419 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKD1-222ENST00000496574 NISCHQ9Y2I1 1504 aa23.7■■□□□ 1.38
PKD1-222ENST00000496574 DCAF8L2P0C7V8 631 aa23.37■■□□□ 1.33
PKD1-222ENST00000496574 SUPT5HO00267 1087 aaKnown RBP23.33■■□□□ 1.33
PKD1-222ENST00000496574 SHROOM4Q9ULL8 1493 aa22.85■■□□□ 1.25
PKD1-222ENST00000496574 PCGF6Q9BYE7 350 aa22.62■■□□□ 1.21
PKD1-222ENST00000496574 PELP1Q8IZL8 1130 aaKnown RBP22.47■■□□□ 1.19
PKD1-222ENST00000496574 EHMT2Q96KQ7 1210 aa22.2■■□□□ 1.14
PKD1-222ENST00000496574 ZEB1P37275 1124 aaPredicted RBP22.13■■□□□ 1.13
PKD1-222ENST00000496574 HRCP23327 699 aa22.13■■□□□ 1.13
PKD1-222ENST00000496574 CENPBP07199 599 aaPredicted RBP22.02■■□□□ 1.12
PKD1-222ENST00000496574 MYT1Q01538 1121 aa22■■□□□ 1.11
PKD1-222ENST00000496574 FAM9AQ8IZU1 332 aaPredicted RBP21.88■■□□□ 1.09
PKD1-222ENST00000496574 CCER1Q8TC90 406 aaPredicted RBP21.72■■□□□ 1.07
PKD1-222ENST00000496574 TRIM26Q12899 539 aaPredicted RBP21.66■■□□□ 1.06
PKD1-222ENST00000496574 PPARGC1BQ86YN6 1023 aaKnown RBP21.62■■□□□ 1.05
PKD1-222ENST00000496574 TTBK1Q5TCY1 1321 aaPredicted RBP21.6■■□□□ 1.05
PKD1-222ENST00000496574 APLP2Q06481 763 aa21.58■■□□□ 1.04
PKD1-222ENST00000496574 TRIM41Q8WV44 630 aa21.56■■□□□ 1.04
PKD1-222ENST00000496574 CHIC1Q5VXU3 224 aa21.48■■□□□ 1.03
PKD1-222ENST00000496574 YTHDC1Q96MU7 727 aaKnown RBP21.41■■□□□ 1.02
PKD1-222ENST00000496574 LOC105371045A0A1W2PR82 267 aa21.34■■□□□ 1.01
PKD1-222ENST00000496574 ERICH6Q7L0X2 663 aa21.28■■□□□ 1
PKD1-222ENST00000496574 NEFLP07196 543 aa21.07■□□□□ 0.96
PKD1-222ENST00000496574 UBTFP17480 764 aaKnown RBP21.03■□□□□ 0.96
PKD1-222ENST00000496574 DIEXFQ68CQ4 756 aaKnown RBP20.98■□□□□ 0.95
PKD1-222ENST00000496574 RANGAP1P46060 587 aaPredicted RBP20.95■□□□□ 0.94
PKD1-222ENST00000496574 GTF3C3Q9Y5Q9 886 aa20.9■□□□□ 0.94
PKD1-222ENST00000496574 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.89■□□□□ 0.93
PKD1-222ENST00000496574 ACIN1Q9UKV3 1341 aaKnown RBP20.75■□□□□ 0.91
PKD1-222ENST00000496574 HNRNPUL2Q1KMD3 747 aaKnown RBP20.66■□□□□ 0.9
PKD1-222ENST00000496574 ATP1B4Q9UN42 357 aaPredicted RBP20.52■□□□□ 0.88
PKD1-222ENST00000496574 SCAF1Q9H7N4 1312 aaKnown RBP20.5■□□□□ 0.87
PKD1-222ENST00000496574 DCAF1Q9Y4B6 1507 aa20.47■□□□□ 0.87
PKD1-222ENST00000496574 ZNF316A6NFI3 1004 aaPredicted RBP20.45■□□□□ 0.86
PKD1-222ENST00000496574 ITGAEP38570 1179 aa20.39■□□□□ 0.85
PKD1-222ENST00000496574 NEUROD1Q13562 356 aa20.37■□□□□ 0.85
PKD1-222ENST00000496574 BCANQ96GW7 911 aa20.28■□□□□ 0.84
PKD1-222ENST00000496574 RTL5Q5HYW3 569 aaPredicted RBP20.18■□□□□ 0.82
PKD1-222ENST00000496574 DAXXQ9UER7 740 aaPredicted RBP20.15■□□□□ 0.82
PKD1-222ENST00000496574 MYO15BQ96JP2 1530 aa20.13■□□□□ 0.81
PKD1-222ENST00000496574 CLSPNQ9HAW4 1339 aa20.11■□□□□ 0.81
PKD1-222ENST00000496574 CDK11AQ9UQ88 783 aaPredicted RBP20.05■□□□□ 0.8
PKD1-222ENST00000496574 ABCC9O60706 1549 aa20.02■□□□□ 0.8
PKD1-222ENST00000496574 POLR3GLQ9BT43 218 aa19.99■□□□□ 0.79
PKD1-222ENST00000496574 ANP32CO43423 234 aa19.97■□□□□ 0.79
PKD1-222ENST00000496574 CNGB1Q14028 1251 aaPredicted RBP19.94■□□□□ 0.78
PKD1-222ENST00000496574 FKBP8Q14318 412 aa19.87■□□□□ 0.77
PKD1-222ENST00000496574 MIER1Q8N108 512 aa19.87■□□□□ 0.77
PKD1-222ENST00000496574 FAM50AQ14320 339 aaKnown RBP19.85■□□□□ 0.77
PKD1-222ENST00000496574 CSRNP3Q8WYN3 585 aa19.83■□□□□ 0.77
PKD1-222ENST00000496574 CCDC180Q9P1Z9 1646 aa19.82■□□□□ 0.76
PKD1-222ENST00000496574 ZCCHC6Q5VYS8 1495 aaKnown RBP19.81■□□□□ 0.76
PKD1-222ENST00000496574 PABPN1Q86U42 306 aaKnown RBP eCLIP19.68■□□□□ 0.74
PKD1-222ENST00000496574 ANP32EQ9BTT0 268 aa19.67■□□□□ 0.74
PKD1-222ENST00000496574 MYT1LQ9UL68 1186 aa19.67■□□□□ 0.74
PKD1-222ENST00000496574 ANP32AP39687 249 aaKnown RBP19.66■□□□□ 0.74
PKD1-222ENST00000496574 DDX10Q13206 875 aaKnown RBP19.61■□□□□ 0.73
PKD1-222ENST00000496574 TRIM52Q96A61 297 aa19.6■□□□□ 0.73
PKD1-222ENST00000496574 HNRNPUQ00839 825 aaKnown RBP eCLIP19.54■□□□□ 0.72
PKD1-222ENST00000496574 NPM2Q86SE8 214 aaKnown RBP19.45■□□□□ 0.7
PKD1-222ENST00000496574 EIF5BO60841 1220 aaKnown RBP19.43■□□□□ 0.7
PKD1-222ENST00000496574 NBR1Q14596 966 aa19.43■□□□□ 0.7
PKD1-222ENST00000496574 SUPT16HQ9Y5B9 1047 aaKnown RBP19.43■□□□□ 0.7
PKD1-222ENST00000496574 ZNF326Q5BKZ1 582 aaKnown RBP19.38■□□□□ 0.69
PKD1-222ENST00000496574 TONSLQ96HA7 1378 aa19.37■□□□□ 0.69
PKD1-222ENST00000496574 BCL11AQ9H165 835 aa19.37■□□□□ 0.69
PKD1-222ENST00000496574 ZBTB47Q9UFB7 747 aaPredicted RBP19.36■□□□□ 0.69
PKD1-222ENST00000496574 FAM9BQ8IZU0 186 aa19.33■□□□□ 0.68
PKD1-222ENST00000496574 CEP162Q5TB80 1403 aa19.33■□□□□ 0.68
PKD1-222ENST00000496574 IRX6P78412 446 aaPredicted RBP19.33■□□□□ 0.68
PKD1-222ENST00000496574 CCDC136Q96JN2 1154 aa19.3■□□□□ 0.68
PKD1-222ENST00000496574 RSF1Q96T23 1441 aaPredicted RBP19.27■□□□□ 0.67
PKD1-222ENST00000496574 P3H3Q8IVL6 736 aa19.26■□□□□ 0.67
PKD1-222ENST00000496574 CLIP1P30622 1438 aa19.25■□□□□ 0.67
PKD1-222ENST00000496574 SCRIBQ14160 1630 aa19.25■□□□□ 0.67
PKD1-222ENST00000496574 HIRIP3Q9BW71 556 aaPredicted RBP19.23■□□□□ 0.67
PKD1-222ENST00000496574 MRS2Q9HD23 443 aa19.19■□□□□ 0.66
PKD1-222ENST00000496574 SLC4A1APQ9BWU0 796 aaKnown RBP19.18■□□□□ 0.66
PKD1-222ENST00000496574 TNIKQ9UKE5 1360 aa19.16■□□□□ 0.66
PKD1-222ENST00000496574 EEA1Q15075 1411 aa19.16■□□□□ 0.66
PKD1-222ENST00000496574 TSHZ2Q9NRE2 1034 aa19.12■□□□□ 0.65
PKD1-222ENST00000496574 RBM19Q9Y4C8 960 aaKnown RBP19.12■□□□□ 0.65
PKD1-222ENST00000496574 GOLGA3Q08378 1498 aa19.12■□□□□ 0.65
PKD1-222ENST00000496574 GLIPR1L2Q4G1C9 344 aa19.11■□□□□ 0.65
PKD1-222ENST00000496574 CANXP27824 592 aaKnown RBP19.1■□□□□ 0.65
PKD1-222ENST00000496574 TMC1Q8TDI8 760 aa19.07■□□□□ 0.64
PKD1-222ENST00000496574 SALL2Q9Y467 1007 aaPredicted RBP19.03■□□□□ 0.64
PKD1-222ENST00000496574 PPP4R2Q9NY27 417 aa19.03■□□□□ 0.64
PKD1-222ENST00000496574 EIF4G2P78344 907 aaKnown RBP eCLIP19■□□□□ 0.63
PKD1-222ENST00000496574 NOP58Q9Y2X3 529 aaKnown RBP18.99■□□□□ 0.63
PKD1-222ENST00000496574 DEKP35659 375 aaKnown RBP18.96■□□□□ 0.63
PKD1-222ENST00000496574 UPF2Q9HAU5 1272 aaKnown RBP18.96■□□□□ 0.63
PKD1-222ENST00000496574 ARID3CA6NKF2 412 aa18.93■□□□□ 0.62
PKD1-222ENST00000496574 RB1CC1Q8TDY2 1594 aa18.92■□□□□ 0.62
PKD1-222ENST00000496574 ANP32BQ92688 251 aaKnown RBP18.91■□□□□ 0.62
PKD1-222ENST00000496574 DDRGK1Q96HY6 314 aa18.91■□□□□ 0.62
PKD1-222ENST00000496574 CHIC2Q9UKJ5 165 aa18.91■□□□□ 0.62
PKD1-222ENST00000496574 SIN3AQ96ST3 1273 aa18.9■□□□□ 0.62
PKD1-222ENST00000496574 RTN4Q9NQC3 1192 aaKnown RBP18.9■□□□□ 0.62
PKD1-222ENST00000496574 PPM1GO15355 546 aaPredicted RBP18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms