RNA–Protein interactions for RNA: ENST00000496230.5

HCN3-204, Transcript of hyperpolarization activated cyclic nucleotide gated potassium channel 3, humanhuman

TSL 2

Gene HCN3, Length 3,245 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3-204ENST00000496230 NISCHQ9Y2I1 1504 aa24.98■■□□□ 1.59
HCN3-204ENST00000496230 DCAF8L2P0C7V8 631 aa22.08■■□□□ 1.12
HCN3-204ENST00000496230 SHROOM4Q9ULL8 1493 aa22.01■■□□□ 1.11
HCN3-204ENST00000496230 SUPT5HO00267 1087 aaKnown RBP21.45■■□□□ 1.02
HCN3-204ENST00000496230 CCDC180Q9P1Z9 1646 aa20.96■□□□□ 0.95
HCN3-204ENST00000496230 ZCCHC6Q5VYS8 1495 aaKnown RBP20.94■□□□□ 0.94
HCN3-204ENST00000496230 ABCC9O60706 1549 aa20.7■□□□□ 0.91
HCN3-204ENST00000496230 SCRIBQ14160 1630 aa20.29■□□□□ 0.84
HCN3-204ENST00000496230 CHIC1Q5VXU3 224 aa20.21■□□□□ 0.83
HCN3-204ENST00000496230 EHMT2Q96KQ7 1210 aa20.21■□□□□ 0.83
HCN3-204ENST00000496230 PABPN1Q86U42 306 aaKnown RBP eCLIP20.04■□□□□ 0.8
HCN3-204ENST00000496230 DCAF1Q9Y4B6 1507 aa20.04■□□□□ 0.8
HCN3-204ENST00000496230 FAM9AQ8IZU1 332 aaPredicted RBP20■□□□□ 0.79
HCN3-204ENST00000496230 LOC105371045A0A1W2PR82 267 aa19.99■□□□□ 0.79
HCN3-204ENST00000496230 MYO15BQ96JP2 1530 aa19.94■□□□□ 0.78
HCN3-204ENST00000496230 CECR2Q9BXF3 1484 aa19.85■□□□□ 0.77
HCN3-204ENST00000496230 RSF1Q96T23 1441 aaPredicted RBP19.81■□□□□ 0.76
HCN3-204ENST00000496230 TRIM41Q8WV44 630 aa19.73■□□□□ 0.75
HCN3-204ENST00000496230 NACADO15069 1562 aa19.69■□□□□ 0.74
HCN3-204ENST00000496230 MROH2BQ7Z745 1585 aa19.6■□□□□ 0.73
HCN3-204ENST00000496230 PCGF6Q9BYE7 350 aa19.59■□□□□ 0.73
HCN3-204ENST00000496230 RB1CC1Q8TDY2 1594 aa19.57■□□□□ 0.72
HCN3-204ENST00000496230 PPARGC1BQ86YN6 1023 aaKnown RBP19.46■□□□□ 0.71
HCN3-204ENST00000496230 WIZO95785 1651 aa19.46■□□□□ 0.71
HCN3-204ENST00000496230 TTBK1Q5TCY1 1321 aaPredicted RBP19.36■□□□□ 0.69
HCN3-204ENST00000496230 RANGAP1P46060 587 aaPredicted RBP19.22■□□□□ 0.67
HCN3-204ENST00000496230 UNC13AQ9UPW8 1703 aa19.19■□□□□ 0.66
HCN3-204ENST00000496230 BAZ1AQ9NRL2 1556 aaPredicted RBP19.16■□□□□ 0.66
HCN3-204ENST00000496230 CCDC88BA6NC98 1476 aa19.08■□□□□ 0.65
HCN3-204ENST00000496230 ABCC8Q09428 1581 aa19.08■□□□□ 0.64
HCN3-204ENST00000496230 BICRAQ9NZM4 1560 aa19.06■□□□□ 0.64
HCN3-204ENST00000496230 SMARCA4P51532 1647 aa19.05■□□□□ 0.64
HCN3-204ENST00000496230 UBTFP17480 764 aaKnown RBP19■□□□□ 0.63
HCN3-204ENST00000496230 SOGA1O94964 1423 aa18.89■□□□□ 0.61
HCN3-204ENST00000496230 HRCP23327 699 aa18.89■□□□□ 0.61
HCN3-204ENST00000496230 TOP2AP11388 1531 aaKnown RBP18.88■□□□□ 0.61
HCN3-204ENST00000496230 TRIM26Q12899 539 aaPredicted RBP18.88■□□□□ 0.61
HCN3-204ENST00000496230 SMARCA2P51531 1590 aa18.85■□□□□ 0.61
HCN3-204ENST00000496230 RUSC2Q8N2Y8 1516 aa18.83■□□□□ 0.61
HCN3-204ENST00000496230 BAZ1BQ9UIG0 1483 aaKnown RBP18.81■□□□□ 0.6
HCN3-204ENST00000496230 ATAD2BQ9ULI0 1458 aa18.8■□□□□ 0.6
HCN3-204ENST00000496230 CSRNP3Q8WYN3 585 aa18.76■□□□□ 0.59
HCN3-204ENST00000496230 WRNQ14191 1432 aaPredicted RBP eCLIP18.67■□□□□ 0.58
HCN3-204ENST00000496230 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.63■□□□□ 0.57
HCN3-204ENST00000496230 DNAJC5BQ9UF47 199 aa18.62■□□□□ 0.57
HCN3-204ENST00000496230 EIF4G1Q04637 1599 aaKnown RBP18.56■□□□□ 0.56
HCN3-204ENST00000496230 CEP162Q5TB80 1403 aa18.49■□□□□ 0.55
HCN3-204ENST00000496230 SYNJ1O43426 1573 aa18.48■□□□□ 0.55
HCN3-204ENST00000496230 HNRNPUL2Q1KMD3 747 aaKnown RBP18.46■□□□□ 0.55
HCN3-204ENST00000496230 CCER1Q8TC90 406 aaPredicted RBP18.46■□□□□ 0.55
HCN3-204ENST00000496230 ATP1B4Q9UN42 357 aaPredicted RBP18.42■□□□□ 0.54
HCN3-204ENST00000496230 APLP2Q06481 763 aa18.4■□□□□ 0.54
HCN3-204ENST00000496230 PEG3Q9GZU2 1588 aa18.39■□□□□ 0.53
HCN3-204ENST00000496230 P3H3Q8IVL6 736 aa18.39■□□□□ 0.53
HCN3-204ENST00000496230 NCAPD3P42695 1498 aa18.36■□□□□ 0.53
HCN3-204ENST00000496230 RAPGEF2Q9Y4G8 1499 aa18.34■□□□□ 0.53
HCN3-204ENST00000496230 TNIKQ9UKE5 1360 aa18.33■□□□□ 0.52
HCN3-204ENST00000496230 ITGAEP38570 1179 aa18.3■□□□□ 0.52
HCN3-204ENST00000496230 GOLGA3Q08378 1498 aa18.29■□□□□ 0.52
HCN3-204ENST00000496230 NESP48681 1621 aa18.27■□□□□ 0.52
HCN3-204ENST00000496230 CC2D2AQ9P2K1 1620 aa18.27■□□□□ 0.52
HCN3-204ENST00000496230 CLIP1P30622 1438 aa18.26■□□□□ 0.51
HCN3-204ENST00000496230 CADPSQ9ULU8 1353 aa18.21■□□□□ 0.5
HCN3-204ENST00000496230 CUX1P39880 1505 aa18.2■□□□□ 0.5
HCN3-204ENST00000496230 EEA1Q15075 1411 aa18.2■□□□□ 0.5
HCN3-204ENST00000496230 CEP164Q9UPV0 1460 aa18.19■□□□□ 0.5
HCN3-204ENST00000496230 CFTRP13569 1480 aa18.16■□□□□ 0.5
HCN3-204ENST00000496230 CUX2O14529 1486 aa18.15■□□□□ 0.5
HCN3-204ENST00000496230 HMGXB3Q12766 1538 aa18.14■□□□□ 0.49
HCN3-204ENST00000496230 KANK4Q5T7N3 995 aaPredicted RBP18.14■□□□□ 0.49
HCN3-204ENST00000496230 ARID3CA6NKF2 412 aa18.11■□□□□ 0.49
HCN3-204ENST00000496230 KIF27Q86VH2 1401 aa18.1■□□□□ 0.49
HCN3-204ENST00000496230 TOP2BQ02880 1626 aa18.09■□□□□ 0.49
HCN3-204ENST00000496230 RAD54L2Q9Y4B4 1467 aa18.09■□□□□ 0.49
HCN3-204ENST00000496230 ZEB1P37275 1124 aaPredicted RBP18.08■□□□□ 0.49
HCN3-204ENST00000496230 PELP1Q8IZL8 1130 aaKnown RBP18.07■□□□□ 0.48
HCN3-204ENST00000496230 TDRD9Q8NDG6 1382 aaKnown RBP18.05■□□□□ 0.48
HCN3-204ENST00000496230 FANCD2Q9BXW9 1451 aa18.05■□□□□ 0.48
HCN3-204ENST00000496230 FGD5Q6ZNL6 1462 aa18.02■□□□□ 0.48
HCN3-204ENST00000496230 IGF1RP08069 1367 aa18.01■□□□□ 0.47
HCN3-204ENST00000496230 CARMIL1Q5VZK9 1371 aa17.99■□□□□ 0.47
HCN3-204ENST00000496230 VPS8Q8N3P4 1428 aa17.96■□□□□ 0.47
HCN3-204ENST00000496230 KIF21BO75037 1637 aa17.93■□□□□ 0.46
HCN3-204ENST00000496230 PRXQ9BXM0 1461 aa17.92■□□□□ 0.46
HCN3-204ENST00000496230 FAM50AQ14320 339 aaKnown RBP17.92■□□□□ 0.46
HCN3-204ENST00000496230 FBLN2P98095 1184 aa17.91■□□□□ 0.46
HCN3-204ENST00000496230 ARAP1Q96P48 1450 aa17.91■□□□□ 0.46
HCN3-204ENST00000496230 BIVM-ERCC5R4GMW8 1640 aa17.89■□□□□ 0.45
HCN3-204ENST00000496230 POLA1P09884 1462 aaPredicted RBP17.82■□□□□ 0.44
HCN3-204ENST00000496230 TOPBP1Q92547 1522 aa17.81■□□□□ 0.44
HCN3-204ENST00000496230 FHOD3Q2V2M9 1422 aa17.79■□□□□ 0.44
HCN3-204ENST00000496230 ARHGAP35Q9NRY4 1499 aa17.79■□□□□ 0.44
HCN3-204ENST00000496230 URB2Q14146 1524 aaKnown RBP17.76■□□□□ 0.43
HCN3-204ENST00000496230 DIEXFQ68CQ4 756 aaKnown RBP17.75■□□□□ 0.43
HCN3-204ENST00000496230 YTHDC1Q96MU7 727 aaKnown RBP17.75■□□□□ 0.43
HCN3-204ENST00000496230 AQRO60306 1485 aaKnown RBP eCLIP17.75■□□□□ 0.431e-6■■■■■ 33.8
HCN3-204ENST00000496230 PDS5BQ9NTI5 1447 aa17.73■□□□□ 0.43
HCN3-204ENST00000496230 NEUROD1Q13562 356 aa17.71■□□□□ 0.43
HCN3-204ENST00000496230 ERICH3Q5RHP9 1530 aa17.68■□□□□ 0.42
HCN3-204ENST00000496230 DNMBPQ6XZF7 1577 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms