RNA–Protein interactions for RNA: ENST00000495554.1

CHTOP-206, Transcript of chromatin target of PRMT1, humanhuman

TSL 2

Gene CHTOP, Length 2,553 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHTOP-206ENST00000495554 NISCHQ9Y2I1 1504 aa31.92■■■□□ 2.7
CHTOP-206ENST00000495554 CCDC180Q9P1Z9 1646 aa27.44■■□□□ 1.98
CHTOP-206ENST00000495554 ZCCHC6Q5VYS8 1495 aaKnown RBP26.9■■□□□ 1.9
CHTOP-206ENST00000495554 SHROOM4Q9ULL8 1493 aa26.57■■□□□ 1.84
CHTOP-206ENST00000495554 DCAF8L2P0C7V8 631 aa26.38■■□□□ 1.81
CHTOP-206ENST00000495554 DCAF1Q9Y4B6 1507 aa26.3■■□□□ 1.8
CHTOP-206ENST00000495554 SUPT5HO00267 1087 aaKnown RBP25.82■■□□□ 1.72
CHTOP-206ENST00000495554 MYO15BQ96JP2 1530 aa25.77■■□□□ 1.72
CHTOP-206ENST00000495554 ABCC9O60706 1549 aa25.72■■□□□ 1.71
CHTOP-206ENST00000495554 NACADO15069 1562 aa25.49■■□□□ 1.67
CHTOP-206ENST00000495554 SCRIBQ14160 1630 aa25.47■■□□□ 1.67
CHTOP-206ENST00000495554 RB1CC1Q8TDY2 1594 aa25.15■■□□□ 1.62
CHTOP-206ENST00000495554 RSF1Q96T23 1441 aaPredicted RBP25.03■■□□□ 1.6
CHTOP-206ENST00000495554 CHIC1Q5VXU3 224 aa25■■□□□ 1.59
CHTOP-206ENST00000495554 CECR2Q9BXF3 1484 aa24.88■■□□□ 1.57
CHTOP-206ENST00000495554 MROH2BQ7Z745 1585 aa24.75■■□□□ 1.55
CHTOP-206ENST00000495554 UNC13AQ9UPW8 1703 aa24.75■■□□□ 1.55
CHTOP-206ENST00000495554 WIZO95785 1651 aa24.56■■□□□ 1.52
CHTOP-206ENST00000495554 BAZ1AQ9NRL2 1556 aaPredicted RBP24.55■■□□□ 1.52
CHTOP-206ENST00000495554 BICRAQ9NZM4 1560 aa24.51■■□□□ 1.51
CHTOP-206ENST00000495554 PABPN1Q86U42 306 aaKnown RBP eCLIP24.46■■□□□ 1.51
CHTOP-206ENST00000495554 SMARCA4P51532 1647 aa24.4■■□□□ 1.5
CHTOP-206ENST00000495554 TOP2AP11388 1531 aaKnown RBP24.22■■□□□ 1.47
CHTOP-206ENST00000495554 TRIM41Q8WV44 630 aa24.16■■□□□ 1.46
CHTOP-206ENST00000495554 LOC105371045A0A1W2PR82 267 aa24.14■■□□□ 1.45
CHTOP-206ENST00000495554 CCDC88BA6NC98 1476 aa24.09■■□□□ 1.45
CHTOP-206ENST00000495554 SMARCA2P51531 1590 aa24.06■■□□□ 1.44
CHTOP-206ENST00000495554 EIF4G1Q04637 1599 aaKnown RBP24.06■■□□□ 1.44
CHTOP-206ENST00000495554 PEG3Q9GZU2 1588 aa24.05■■□□□ 1.44
CHTOP-206ENST00000495554 ATAD2BQ9ULI0 1458 aa23.93■■□□□ 1.42
CHTOP-206ENST00000495554 PCGF6Q9BYE7 350 aa23.86■■□□□ 1.41
CHTOP-206ENST00000495554 FAM9AQ8IZU1 332 aaPredicted RBP23.84■■□□□ 1.41
CHTOP-206ENST00000495554 BAZ1BQ9UIG0 1483 aaKnown RBP23.78■■□□□ 1.4
CHTOP-206ENST00000495554 ABCC8Q09428 1581 aa23.77■■□□□ 1.39
CHTOP-206ENST00000495554 HRCP23327 699 aa23.75■■□□□ 1.39
CHTOP-206ENST00000495554 NCAPD3P42695 1498 aa23.61■■□□□ 1.37
CHTOP-206ENST00000495554 TRIM26Q12899 539 aaPredicted RBP23.6■■□□□ 1.37
CHTOP-206ENST00000495554 EHMT2Q96KQ7 1210 aa23.55■■□□□ 1.36
CHTOP-206ENST00000495554 HMGXB3Q12766 1538 aa23.54■■□□□ 1.36
CHTOP-206ENST00000495554 WRNQ14191 1432 aaPredicted RBP eCLIP23.49■■□□□ 1.355e-6■■□□□ 12.5
CHTOP-206ENST00000495554 SOGA1O94964 1423 aa23.47■■□□□ 1.35
CHTOP-206ENST00000495554 SYNJ1O43426 1573 aa23.39■■□□□ 1.34
CHTOP-206ENST00000495554 RUSC2Q8N2Y8 1516 aa23.38■■□□□ 1.33
CHTOP-206ENST00000495554 PELP1Q8IZL8 1130 aaKnown RBP23.36■■□□□ 1.33
CHTOP-206ENST00000495554 EEA1Q15075 1411 aa23.33■■□□□ 1.33
CHTOP-206ENST00000495554 CSRNP3Q8WYN3 585 aa23.31■■□□□ 1.32
CHTOP-206ENST00000495554 CFTRP13569 1480 aa23.24■■□□□ 1.31
CHTOP-206ENST00000495554 CC2D2AQ9P2K1 1620 aa23.23■■□□□ 1.31
CHTOP-206ENST00000495554 TOP2BQ02880 1626 aa23.2■■□□□ 1.3
CHTOP-206ENST00000495554 TNIKQ9UKE5 1360 aa23.16■■□□□ 1.3
CHTOP-206ENST00000495554 BIVM-ERCC5R4GMW8 1640 aa23.14■■□□□ 1.29
CHTOP-206ENST00000495554 PPARGC1BQ86YN6 1023 aaKnown RBP23.12■■□□□ 1.29
CHTOP-206ENST00000495554 MYT1Q01538 1121 aa23.11■■□□□ 1.29
CHTOP-206ENST00000495554 CEP162Q5TB80 1403 aa23.08■■□□□ 1.29
CHTOP-206ENST00000495554 CUX1P39880 1505 aa23.08■■□□□ 1.29
CHTOP-206ENST00000495554 GOLGA3Q08378 1498 aa23.08■■□□□ 1.28
CHTOP-206ENST00000495554 CADPSQ9ULU8 1353 aa23.07■■□□□ 1.28
CHTOP-206ENST00000495554 UBTFP17480 764 aaKnown RBP23.06■■□□□ 1.28
CHTOP-206ENST00000495554 ZEB1P37275 1124 aaPredicted RBP23.03■■□□□ 1.28
CHTOP-206ENST00000495554 CEP164Q9UPV0 1460 aa23.03■■□□□ 1.28
CHTOP-206ENST00000495554 KIF21BO75037 1637 aa23.02■■□□□ 1.28
CHTOP-206ENST00000495554 PRDM2Q13029 1718 aa23■■□□□ 1.27
CHTOP-206ENST00000495554 RAPGEF2Q9Y4G8 1499 aa22.92■■□□□ 1.26
CHTOP-206ENST00000495554 PRXQ9BXM0 1461 aa22.84■■□□□ 1.25
CHTOP-206ENST00000495554 KIF27Q86VH2 1401 aa22.82■■□□□ 1.24
CHTOP-206ENST00000495554 FANCD2Q9BXW9 1451 aa22.8■■□□□ 1.24
CHTOP-206ENST00000495554 NESP48681 1621 aa22.78■■□□□ 1.24
CHTOP-206ENST00000495554 CLIP1P30622 1438 aa22.78■■□□□ 1.24
CHTOP-206ENST00000495554 DNAJC5BQ9UF47 199 aa22.77■■□□□ 1.24
CHTOP-206ENST00000495554 ERICH3Q5RHP9 1530 aa22.76■■□□□ 1.23
CHTOP-206ENST00000495554 FGD5Q6ZNL6 1462 aa22.73■■□□□ 1.23
CHTOP-206ENST00000495554 CUX2O14529 1486 aa22.69■■□□□ 1.22
CHTOP-206ENST00000495554 IGF1RP08069 1367 aa22.67■■□□□ 1.22
CHTOP-206ENST00000495554 LAMC3Q9Y6N6 1575 aa22.65■■□□□ 1.22
CHTOP-206ENST00000495554 TTBK1Q5TCY1 1321 aaPredicted RBP22.64■■□□□ 1.22
CHTOP-206ENST00000495554 VPS8Q8N3P4 1428 aa22.63■■□□□ 1.21
CHTOP-206ENST00000495554 RANGAP1P46060 587 aaPredicted RBP22.63■■□□□ 1.21
CHTOP-206ENST00000495554 DNMBPQ6XZF7 1577 aa22.63■■□□□ 1.21
CHTOP-206ENST00000495554 TOPBP1Q92547 1522 aa22.61■■□□□ 1.21
CHTOP-206ENST00000495554 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.59■■□□□ 1.21
CHTOP-206ENST00000495554 CCER1Q8TC90 406 aaPredicted RBP22.57■■□□□ 1.2
CHTOP-206ENST00000495554 POLA1P09884 1462 aaPredicted RBP22.56■■□□□ 1.2
CHTOP-206ENST00000495554 RAD54L2Q9Y4B4 1467 aa22.55■■□□□ 1.2
CHTOP-206ENST00000495554 CARMIL1Q5VZK9 1371 aa22.53■■□□□ 1.2
CHTOP-206ENST00000495554 URB2Q14146 1524 aaKnown RBP22.52■■□□□ 1.2
CHTOP-206ENST00000495554 ABCA10Q8WWZ4 1543 aa22.51■■□□□ 1.19
CHTOP-206ENST00000495554 ARAP1Q96P48 1450 aa22.51■■□□□ 1.19
CHTOP-206ENST00000495554 PDS5BQ9NTI5 1447 aa22.5■■□□□ 1.19
CHTOP-206ENST00000495554 APLP2Q06481 763 aa22.48■■□□□ 1.19
CHTOP-206ENST00000495554 ARHGAP35Q9NRY4 1499 aa22.42■■□□□ 1.18
CHTOP-206ENST00000495554 KIF21AQ7Z4S6 1674 aa22.4■■□□□ 1.18
CHTOP-206ENST00000495554 WDR97A6NE52 1622 aa22.35■■□□□ 1.17
CHTOP-206ENST00000495554 TDRD9Q8NDG6 1382 aaKnown RBP22.3■■□□□ 1.16
CHTOP-206ENST00000495554 KANK4Q5T7N3 995 aaPredicted RBP22.29■■□□□ 1.16
CHTOP-206ENST00000495554 CUL7Q14999 1698 aa22.26■■□□□ 1.15
CHTOP-206ENST00000495554 ABCA5Q8WWZ7 1642 aa22.26■■□□□ 1.15
CHTOP-206ENST00000495554 HNRNPUL2Q1KMD3 747 aaKnown RBP22.24■■□□□ 1.15
CHTOP-206ENST00000495554 GAPVD1Q14C86 1478 aa22.24■■□□□ 1.15
CHTOP-206ENST00000495554 TARBP1Q13395 1621 aaKnown RBP22.22■■□□□ 1.15
CHTOP-206ENST00000495554 MRC2Q9UBG0 1479 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms