RNA–Protein interactions for RNA: ENST00000494942.5

UBXN11-215, Transcript of UBX domain protein 11, humanhuman

TSL 2

Gene UBXN11, Length 2,325 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN11-215ENST00000494942 NISCHQ9Y2I1 1504 aa30.75■■■□□ 2.51
UBXN11-215ENST00000494942 CCDC180Q9P1Z9 1646 aa26.36■■□□□ 1.81
UBXN11-215ENST00000494942 ZCCHC6Q5VYS8 1495 aaKnown RBP26.03■■□□□ 1.76
UBXN11-215ENST00000494942 SHROOM4Q9ULL8 1493 aa26.02■■□□□ 1.76
UBXN11-215ENST00000494942 SUPT5HO00267 1087 aaKnown RBP25.59■■□□□ 1.69
UBXN11-215ENST00000494942 ABCC9O60706 1549 aa25.48■■□□□ 1.67
UBXN11-215ENST00000494942 DCAF1Q9Y4B6 1507 aa25.35■■□□□ 1.65
UBXN11-215ENST00000494942 DCAF8L2P0C7V8 631 aa25.24■■□□□ 1.63
UBXN11-215ENST00000494942 CHIC1Q5VXU3 224 aa25.01■■□□□ 1.59
UBXN11-215ENST00000494942 MYO15BQ96JP2 1530 aa24.87■■□□□ 1.57
UBXN11-215ENST00000494942 NACADO15069 1562 aa24.67■■□□□ 1.54
UBXN11-215ENST00000494942 RB1CC1Q8TDY2 1594 aa24.62■■□□□ 1.53
UBXN11-215ENST00000494942 HRCP23327 699 aa24.4■■□□□ 1.5
UBXN11-215ENST00000494942 SCRIBQ14160 1630 aa24.39■■□□□ 1.5
UBXN11-215ENST00000494942 RSF1Q96T23 1441 aaPredicted RBP24.31■■□□□ 1.48
UBXN11-215ENST00000494942 PCGF6Q9BYE7 350 aa24.24■■□□□ 1.47
UBXN11-215ENST00000494942 UNC13AQ9UPW8 1703 aa24.17■■□□□ 1.46
UBXN11-215ENST00000494942 LOC105371045A0A1W2PR82 267 aa24.17■■□□□ 1.46
UBXN11-215ENST00000494942 TRIM41Q8WV44 630 aa23.94■■□□□ 1.42
UBXN11-215ENST00000494942 BICRAQ9NZM4 1560 aa23.91■■□□□ 1.42
UBXN11-215ENST00000494942 TRIM26Q12899 539 aaPredicted RBP23.9■■□□□ 1.42
UBXN11-215ENST00000494942 PABPN1Q86U42 306 aaKnown RBP eCLIP23.88■■□□□ 1.419e-7■■■□□ 16.4
UBXN11-215ENST00000494942 CECR2Q9BXF3 1484 aa23.86■■□□□ 1.41
UBXN11-215ENST00000494942 MROH2BQ7Z745 1585 aa23.83■■□□□ 1.41
UBXN11-215ENST00000494942 WIZO95785 1651 aa23.71■■□□□ 1.39
UBXN11-215ENST00000494942 PPARGC1BQ86YN6 1023 aaKnown RBP23.69■■□□□ 1.38
UBXN11-215ENST00000494942 BAZ1AQ9NRL2 1556 aaPredicted RBP23.66■■□□□ 1.38
UBXN11-215ENST00000494942 FAM9AQ8IZU1 332 aaPredicted RBP23.6■■□□□ 1.37
UBXN11-215ENST00000494942 ZEB1P37275 1124 aaPredicted RBP23.51■■□□□ 1.35
UBXN11-215ENST00000494942 EIF4G1Q04637 1599 aaKnown RBP23.49■■□□□ 1.35
UBXN11-215ENST00000494942 TOP2AP11388 1531 aaKnown RBP23.43■■□□□ 1.34
UBXN11-215ENST00000494942 SMARCA4P51532 1647 aa23.4■■□□□ 1.34
UBXN11-215ENST00000494942 EHMT2Q96KQ7 1210 aa23.28■■□□□ 1.32
UBXN11-215ENST00000494942 CCDC88BA6NC98 1476 aa23.27■■□□□ 1.32
UBXN11-215ENST00000494942 SMARCA2P51531 1590 aa23.26■■□□□ 1.31
UBXN11-215ENST00000494942 ABCC8Q09428 1581 aa23.16■■□□□ 1.3
UBXN11-215ENST00000494942 EEA1Q15075 1411 aa23.07■■□□□ 1.28
UBXN11-215ENST00000494942 CC2D2AQ9P2K1 1620 aa23.06■■□□□ 1.28
UBXN11-215ENST00000494942 WRNQ14191 1432 aaPredicted RBP eCLIP23.05■■□□□ 1.28
UBXN11-215ENST00000494942 DNAJC5BQ9UF47 199 aa23.03■■□□□ 1.28
UBXN11-215ENST00000494942 PEG3Q9GZU2 1588 aa23.02■■□□□ 1.28
UBXN11-215ENST00000494942 TNIKQ9UKE5 1360 aa22.98■■□□□ 1.27
UBXN11-215ENST00000494942 SOGA1O94964 1423 aa22.96■■□□□ 1.27
UBXN11-215ENST00000494942 CEP162Q5TB80 1403 aa22.96■■□□□ 1.27
UBXN11-215ENST00000494942 CSRNP3Q8WYN3 585 aa22.91■■□□□ 1.26
UBXN11-215ENST00000494942 ATAD2BQ9ULI0 1458 aa22.86■■□□□ 1.25
UBXN11-215ENST00000494942 GOLGA3Q08378 1498 aa22.83■■□□□ 1.25
UBXN11-215ENST00000494942 CCER1Q8TC90 406 aaPredicted RBP22.82■■□□□ 1.24
UBXN11-215ENST00000494942 RUSC2Q8N2Y8 1516 aa22.81■■□□□ 1.24
UBXN11-215ENST00000494942 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.79■■□□□ 1.24
UBXN11-215ENST00000494942 UBTFP17480 764 aaKnown RBP22.77■■□□□ 1.24
UBXN11-215ENST00000494942 NCAPD3P42695 1498 aa22.76■■□□□ 1.23
UBXN11-215ENST00000494942 SYNJ1O43426 1573 aa22.71■■□□□ 1.23
UBXN11-215ENST00000494942 BAZ1BQ9UIG0 1483 aaKnown RBP22.71■■□□□ 1.23
UBXN11-215ENST00000494942 CEP164Q9UPV0 1460 aa22.71■■□□□ 1.23
UBXN11-215ENST00000494942 KIF21BO75037 1637 aa22.7■■□□□ 1.22
UBXN11-215ENST00000494942 HMGXB3Q12766 1538 aa22.7■■□□□ 1.22
UBXN11-215ENST00000494942 TTBK1Q5TCY1 1321 aaPredicted RBP22.59■■□□□ 1.21
UBXN11-215ENST00000494942 CLIP1P30622 1438 aa22.53■■□□□ 1.2
UBXN11-215ENST00000494942 TOP2BQ02880 1626 aa22.5■■□□□ 1.19
UBXN11-215ENST00000494942 VPS8Q8N3P4 1428 aa22.47■■□□□ 1.19
UBXN11-215ENST00000494942 BIVM-ERCC5R4GMW8 1640 aa22.44■■□□□ 1.18
UBXN11-215ENST00000494942 SCAF1Q9H7N4 1312 aaKnown RBP22.44■■□□□ 1.18
UBXN11-215ENST00000494942 RAPGEF2Q9Y4G8 1499 aa22.43■■□□□ 1.18
UBXN11-215ENST00000494942 DIEXFQ68CQ4 756 aaKnown RBP22.42■■□□□ 1.18
UBXN11-215ENST00000494942 APLP2Q06481 763 aa22.36■■□□□ 1.17
UBXN11-215ENST00000494942 ERICH3Q5RHP9 1530 aa22.35■■□□□ 1.17
UBXN11-215ENST00000494942 ACIN1Q9UKV3 1341 aaKnown RBP22.3■■□□□ 1.16
UBXN11-215ENST00000494942 PRXQ9BXM0 1461 aa22.28■■□□□ 1.16
UBXN11-215ENST00000494942 PELP1Q8IZL8 1130 aaKnown RBP22.28■■□□□ 1.16
UBXN11-215ENST00000494942 ZNF316A6NFI3 1004 aaPredicted RBP22.28■■□□□ 1.16
UBXN11-215ENST00000494942 HNRNPUL2Q1KMD3 747 aaKnown RBP22.25■■□□□ 1.15
UBXN11-215ENST00000494942 CENPBP07199 599 aaPredicted RBP22.23■■□□□ 1.15
UBXN11-215ENST00000494942 CUX1P39880 1505 aa22.2■■□□□ 1.15
UBXN11-215ENST00000494942 NESP48681 1621 aa22.18■■□□□ 1.14
UBXN11-215ENST00000494942 CFTRP13569 1480 aa22.18■■□□□ 1.14
UBXN11-215ENST00000494942 NEUROD1Q13562 356 aa22.18■■□□□ 1.14
UBXN11-215ENST00000494942 KIF27Q86VH2 1401 aa22.17■■□□□ 1.14
UBXN11-215ENST00000494942 ARAP1Q96P48 1450 aa22.14■■□□□ 1.14
UBXN11-215ENST00000494942 RANGAP1P46060 587 aaPredicted RBP22.14■■□□□ 1.13
UBXN11-215ENST00000494942 CADPSQ9ULU8 1353 aa22.13■■□□□ 1.13
UBXN11-215ENST00000494942 LAMC3Q9Y6N6 1575 aa22.12■■□□□ 1.13
UBXN11-215ENST00000494942 CLSPNQ9HAW4 1339 aa22.07■■□□□ 1.12
UBXN11-215ENST00000494942 PRDM2Q13029 1718 aa22.07■■□□□ 1.12
UBXN11-215ENST00000494942 GTF3C3Q9Y5Q9 886 aa21.98■■□□□ 1.11
UBXN11-215ENST00000494942 RRBP1Q9P2E9 1410 aaKnown RBP21.98■■□□□ 1.11
UBXN11-215ENST00000494942 KANK4Q5T7N3 995 aaPredicted RBP21.96■■□□□ 1.11
UBXN11-215ENST00000494942 ARHGAP35Q9NRY4 1499 aa21.95■■□□□ 1.1
UBXN11-215ENST00000494942 KIF21AQ7Z4S6 1674 aa21.94■■□□□ 1.1
UBXN11-215ENST00000494942 PDS5BQ9NTI5 1447 aa21.94■■□□□ 1.1
UBXN11-215ENST00000494942 DHX57Q6P158 1386 aaKnown RBP21.93■■□□□ 1.1
UBXN11-215ENST00000494942 ERCC6Q03468 1493 aa21.91■■□□□ 1.1
UBXN11-215ENST00000494942 FANCD2Q9BXW9 1451 aa21.9■■□□□ 1.1
UBXN11-215ENST00000494942 CUX2O14529 1486 aa21.89■■□□□ 1.09
UBXN11-215ENST00000494942 MIER1Q8N108 512 aa21.88■■□□□ 1.09
UBXN11-215ENST00000494942 IGF1RP08069 1367 aa21.88■■□□□ 1.09
UBXN11-215ENST00000494942 MAP3K1Q13233 1512 aa21.85■■□□□ 1.09
UBXN11-215ENST00000494942 CCNB3Q8WWL7 1395 aa21.85■■□□□ 1.09
UBXN11-215ENST00000494942 FGD5Q6ZNL6 1462 aa21.8■■□□□ 1.08
UBXN11-215ENST00000494942 CARMIL1Q5VZK9 1371 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms