RNA–Protein interactions for RNA: ENST00000493669.2

PHACTR4-204, Transcript of phosphatase and actin regulator 4, humanhuman

TSL 1 (best)

Gene PHACTR4, Length 3,078 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHACTR4-204ENST00000493669 NISCHQ9Y2I1 1504 aa23.71■■□□□ 1.39
PHACTR4-204ENST00000493669 CCDC180Q9P1Z9 1646 aa20.55■□□□□ 0.88
PHACTR4-204ENST00000493669 ZCCHC6Q5VYS8 1495 aaKnown RBP20■□□□□ 0.79
PHACTR4-204ENST00000493669 DCAF1Q9Y4B6 1507 aa19.66■□□□□ 0.74
PHACTR4-204ENST00000493669 SHROOM4Q9ULL8 1493 aa19.47■□□□□ 0.71
PHACTR4-204ENST00000493669 DCAF8L2P0C7V8 631 aa19.35■□□□□ 0.69
PHACTR4-204ENST00000493669 MYO15BQ96JP2 1530 aa19.32■□□□□ 0.68
PHACTR4-204ENST00000493669 NACADO15069 1562 aa19.06■□□□□ 0.64
PHACTR4-204ENST00000493669 ABCC9O60706 1549 aa19.04■□□□□ 0.64
PHACTR4-204ENST00000493669 SUPT5HO00267 1087 aaKnown RBP18.91■□□□□ 0.62
PHACTR4-204ENST00000493669 SCRIBQ14160 1630 aa18.88■□□□□ 0.61
PHACTR4-204ENST00000493669 RB1CC1Q8TDY2 1594 aa18.8■□□□□ 0.6
PHACTR4-204ENST00000493669 RSF1Q96T23 1441 aaPredicted RBP18.51■□□□□ 0.55
PHACTR4-204ENST00000493669 UNC13AQ9UPW8 1703 aa18.39■□□□□ 0.54
PHACTR4-204ENST00000493669 CECR2Q9BXF3 1484 aa18.35■□□□□ 0.53
PHACTR4-204ENST00000493669 CHIC1Q5VXU3 224 aa18.33■□□□□ 0.52
PHACTR4-204ENST00000493669 MROH2BQ7Z745 1585 aa18.3■□□□□ 0.52
PHACTR4-204ENST00000493669 BAZ1AQ9NRL2 1556 aaPredicted RBP18.3■□□□□ 0.52
PHACTR4-204ENST00000493669 BICRAQ9NZM4 1560 aa18.2■□□□□ 0.5
PHACTR4-204ENST00000493669 WIZO95785 1651 aa18.16■□□□□ 0.5
PHACTR4-204ENST00000493669 SMARCA4P51532 1647 aa18.15■□□□□ 0.5
PHACTR4-204ENST00000493669 TOP2AP11388 1531 aaKnown RBP18.03■□□□□ 0.48
PHACTR4-204ENST00000493669 PABPN1Q86U42 306 aaKnown RBP eCLIP17.99■□□□□ 0.47
PHACTR4-204ENST00000493669 PEG3Q9GZU2 1588 aa17.95■□□□□ 0.46
PHACTR4-204ENST00000493669 EIF4G1Q04637 1599 aaKnown RBP17.86■□□□□ 0.45
PHACTR4-204ENST00000493669 SMARCA2P51531 1590 aa17.85■□□□□ 0.45
PHACTR4-204ENST00000493669 CCDC88BA6NC98 1476 aa17.82■□□□□ 0.44
PHACTR4-204ENST00000493669 TRIM41Q8WV44 630 aa17.8■□□□□ 0.44
PHACTR4-204ENST00000493669 ATAD2BQ9ULI0 1458 aa17.77■□□□□ 0.43
PHACTR4-204ENST00000493669 BAZ1BQ9UIG0 1483 aaKnown RBP17.68■□□□□ 0.42
PHACTR4-204ENST00000493669 HMGXB3Q12766 1538 aa17.6■□□□□ 0.41
PHACTR4-204ENST00000493669 LOC105371045A0A1W2PR82 267 aa17.58■□□□□ 0.4
PHACTR4-204ENST00000493669 NCAPD3P42695 1498 aa17.57■□□□□ 0.4
PHACTR4-204ENST00000493669 ABCC8Q09428 1581 aa17.52■□□□□ 0.4
PHACTR4-204ENST00000493669 FAM9AQ8IZU1 332 aaPredicted RBP17.42■□□□□ 0.38
PHACTR4-204ENST00000493669 WRNQ14191 1432 aaPredicted RBP eCLIP17.42■□□□□ 0.38
PHACTR4-204ENST00000493669 EEA1Q15075 1411 aa17.4■□□□□ 0.38
PHACTR4-204ENST00000493669 SYNJ1O43426 1573 aa17.32■□□□□ 0.36
PHACTR4-204ENST00000493669 CFTRP13569 1480 aa17.27■□□□□ 0.36
PHACTR4-204ENST00000493669 SOGA1O94964 1423 aa17.27■□□□□ 0.36
PHACTR4-204ENST00000493669 CC2D2AQ9P2K1 1620 aa17.27■□□□□ 0.35
PHACTR4-204ENST00000493669 TOP2BQ02880 1626 aa17.25■□□□□ 0.35
PHACTR4-204ENST00000493669 BIVM-ERCC5R4GMW8 1640 aa17.24■□□□□ 0.35
PHACTR4-204ENST00000493669 PRDM2Q13029 1718 aa17.22■□□□□ 0.35
PHACTR4-204ENST00000493669 CSRNP3Q8WYN3 585 aa17.2■□□□□ 0.34
PHACTR4-204ENST00000493669 RUSC2Q8N2Y8 1516 aa17.17■□□□□ 0.34
PHACTR4-204ENST00000493669 TNIKQ9UKE5 1360 aa17.15■□□□□ 0.34
PHACTR4-204ENST00000493669 PCGF6Q9BYE7 350 aa17.15■□□□□ 0.34
PHACTR4-204ENST00000493669 GOLGA3Q08378 1498 aa17.14■□□□□ 0.33
PHACTR4-204ENST00000493669 KIF21BO75037 1637 aa17.14■□□□□ 0.33
PHACTR4-204ENST00000493669 TRIM26Q12899 539 aaPredicted RBP17.13■□□□□ 0.33
PHACTR4-204ENST00000493669 CADPSQ9ULU8 1353 aa17.13■□□□□ 0.33
PHACTR4-204ENST00000493669 CEP164Q9UPV0 1460 aa17.11■□□□□ 0.33
PHACTR4-204ENST00000493669 EHMT2Q96KQ7 1210 aa17.11■□□□□ 0.33
PHACTR4-204ENST00000493669 CUX1P39880 1505 aa17.1■□□□□ 0.33
PHACTR4-204ENST00000493669 CEP162Q5TB80 1403 aa17.06■□□□□ 0.32
PHACTR4-204ENST00000493669 HRCP23327 699 aa16.99■□□□□ 0.31
PHACTR4-204ENST00000493669 UBTFP17480 764 aaKnown RBP16.98■□□□□ 0.31
PHACTR4-204ENST00000493669 ERICH3Q5RHP9 1530 aa16.97■□□□□ 0.31
PHACTR4-204ENST00000493669 KIF27Q86VH2 1401 aa16.96■□□□□ 0.31
PHACTR4-204ENST00000493669 FANCD2Q9BXW9 1451 aa16.94■□□□□ 0.3
PHACTR4-204ENST00000493669 PRXQ9BXM0 1461 aa16.94■□□□□ 0.3
PHACTR4-204ENST00000493669 LAMC3Q9Y6N6 1575 aa16.93■□□□□ 0.3
PHACTR4-204ENST00000493669 RAPGEF2Q9Y4G8 1499 aa16.92■□□□□ 0.3
PHACTR4-204ENST00000493669 DNMBPQ6XZF7 1577 aa16.87■□□□□ 0.29
PHACTR4-204ENST00000493669 FGD5Q6ZNL6 1462 aa16.86■□□□□ 0.29
PHACTR4-204ENST00000493669 CLIP1P30622 1438 aa16.85■□□□□ 0.29
PHACTR4-204ENST00000493669 NESP48681 1621 aa16.82■□□□□ 0.28
PHACTR4-204ENST00000493669 CUX2O14529 1486 aa16.81■□□□□ 0.28
PHACTR4-204ENST00000493669 TOPBP1Q92547 1522 aa16.8■□□□□ 0.28
PHACTR4-204ENST00000493669 VPS8Q8N3P4 1428 aa16.78■□□□□ 0.28
PHACTR4-204ENST00000493669 PDS5BQ9NTI5 1447 aa16.78■□□□□ 0.28
PHACTR4-204ENST00000493669 ABCA10Q8WWZ4 1543 aa16.75■□□□□ 0.27
PHACTR4-204ENST00000493669 IGF1RP08069 1367 aa16.75■□□□□ 0.27
PHACTR4-204ENST00000493669 POLA1P09884 1462 aaPredicted RBP16.73■□□□□ 0.27
PHACTR4-204ENST00000493669 URB2Q14146 1524 aaKnown RBP16.7■□□□□ 0.26
PHACTR4-204ENST00000493669 PPARGC1BQ86YN6 1023 aaKnown RBP16.68■□□□□ 0.26
PHACTR4-204ENST00000493669 CARMIL1Q5VZK9 1371 aa16.67■□□□□ 0.26
PHACTR4-204ENST00000493669 ZEB1P37275 1124 aaPredicted RBP16.67■□□□□ 0.26
PHACTR4-204ENST00000493669 WDR97A6NE52 1622 aa16.66■□□□□ 0.26
PHACTR4-204ENST00000493669 RAD54L2Q9Y4B4 1467 aa16.65■□□□□ 0.26
PHACTR4-204ENST00000493669 ARAP1Q96P48 1450 aa16.64■□□□□ 0.26
PHACTR4-204ENST00000493669 KIF21AQ7Z4S6 1674 aa16.64■□□□□ 0.25
PHACTR4-204ENST00000493669 CUL7Q14999 1698 aa16.64■□□□□ 0.25
PHACTR4-204ENST00000493669 DNAJC5BQ9UF47 199 aa16.63■□□□□ 0.25
PHACTR4-204ENST00000493669 APLP2Q06481 763 aa16.59■□□□□ 0.25
PHACTR4-204ENST00000493669 ABCA5Q8WWZ7 1642 aa16.58■□□□□ 0.25
PHACTR4-204ENST00000493669 ARHGAP35Q9NRY4 1499 aa16.58■□□□□ 0.24
PHACTR4-204ENST00000493669 MRC2Q9UBG0 1479 aa16.54■□□□□ 0.24
PHACTR4-204ENST00000493669 RANGAP1P46060 587 aaPredicted RBP16.53■□□□□ 0.24
PHACTR4-204ENST00000493669 TARBP1Q13395 1621 aaKnown RBP16.52■□□□□ 0.24
PHACTR4-204ENST00000493669 GAPVD1Q14C86 1478 aa16.51■□□□□ 0.23
PHACTR4-204ENST00000493669 TTBK1Q5TCY1 1321 aaPredicted RBP16.48■□□□□ 0.23
PHACTR4-204ENST00000493669 CTTNBP2Q8WZ74 1663 aa16.48■□□□□ 0.23
PHACTR4-204ENST00000493669 EFCAB5A4FU69 1503 aa16.48■□□□□ 0.23
PHACTR4-204ENST00000493669 MAP3K1Q13233 1512 aa16.47■□□□□ 0.23
PHACTR4-204ENST00000493669 TDRD9Q8NDG6 1382 aaKnown RBP16.45■□□□□ 0.22
PHACTR4-204ENST00000493669 WDR62O43379 1518 aa16.45■□□□□ 0.22
PHACTR4-204ENST00000493669 FHAD1B1AJZ9 1412 aa16.44■□□□□ 0.22
PHACTR4-204ENST00000493669 IFT140Q96RY7 1462 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms