RNA–Protein interactions for RNA: ENST00000490653.1

PRPF4B-208, Transcript of pre-mRNA processing factor 4B, humanhuman

TSL 2

Gene PRPF4B, Length 581 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4B-208ENST00000490653 AEBP2Q6ZN18 517 aaPredicted RBP24.92■■□□□ 1.58
PRPF4B-208ENST00000490653 CHIC1Q5VXU3 224 aa23.52■■□□□ 1.36
PRPF4B-208ENST00000490653 SENP3Q9H4L4 574 aaPredicted RBP21.28■■□□□ 1
PRPF4B-208ENST00000490653 PHF23Q9BUL5 403 aaPredicted RBP20.96■□□□□ 0.95
PRPF4B-208ENST00000490653 FOXD1Q16676 465 aa19.84■□□□□ 0.77
PRPF4B-208ENST00000490653 PLPPR3Q6T4P5 718 aa18.7■□□□□ 0.58
PRPF4B-208ENST00000490653 MSH5O43196 834 aa18.64■□□□□ 0.57
PRPF4B-208ENST00000490653 PIAS4Q8N2W9 510 aaPredicted RBP18.49■□□□□ 0.55
PRPF4B-208ENST00000490653 POTEDQ86YR6 584 aa18.45■□□□□ 0.54
PRPF4B-208ENST00000490653 PPP6R1Q9UPN7 881 aa18.42■□□□□ 0.54
PRPF4B-208ENST00000490653 ADRA2BP18089 450 aa18.35■□□□□ 0.53
PRPF4B-208ENST00000490653 NISCHQ9Y2I1 1504 aa18.11■□□□□ 0.49
PRPF4B-208ENST00000490653 MAPK8IP2Q13387 824 aaPredicted RBP16.89■□□□□ 0.29
PRPF4B-208ENST00000490653 DMRT2Q9Y5R5 561 aa16.86■□□□□ 0.29
PRPF4B-208ENST00000490653 SCAF1Q9H7N4 1312 aaKnown RBP16.79■□□□□ 0.28
PRPF4B-208ENST00000490653 ABCC9O60706 1549 aa16.59■□□□□ 0.25
PRPF4B-208ENST00000490653 PPP4R3CPQ6ZMV5 832 aa16.36■□□□□ 0.21
PRPF4B-208ENST00000490653 CCDC180Q9P1Z9 1646 aa16.23■□□□□ 0.19
PRPF4B-208ENST00000490653 HOXD11P31277 338 aaPredicted RBP16.18■□□□□ 0.18
PRPF4B-208ENST00000490653 CNKSR2Q8WXI2 1034 aa16.1■□□□□ 0.17
PRPF4B-208ENST00000490653 DCAF8L1A6NGE4 600 aa16.09■□□□□ 0.17
PRPF4B-208ENST00000490653 CACNB1Q02641 598 aaPredicted RBP16.05■□□□□ 0.16
PRPF4B-208ENST00000490653 RNF216Q9NWF9 866 aaPredicted RBP16.01■□□□□ 0.15
PRPF4B-208ENST00000490653 DNAJC5BQ9UF47 199 aa15.94■□□□□ 0.14
PRPF4B-208ENST00000490653 RNF39Q9H2S5 420 aa15.89■□□□□ 0.13
PRPF4B-208ENST00000490653 NCBP3Q53F19 620 aaKnown RBP15.68■□□□□ 0.1
PRPF4B-208ENST00000490653 C1QBPQ07021 282 aaKnown RBP15.65■□□□□ 0.1
PRPF4B-208ENST00000490653 RB1CC1Q8TDY2 1594 aa15.56■□□□□ 0.08
PRPF4B-208ENST00000490653 NPM3O75607 178 aaKnown RBP15.47■□□□□ 0.07
PRPF4B-208ENST00000490653 PABPN1Q86U42 306 aaKnown RBP eCLIP15.45■□□□□ 0.06
PRPF4B-208ENST00000490653 NACADO15069 1562 aa15.43■□□□□ 0.06
PRPF4B-208ENST00000490653 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.37■□□□□ 0.05
PRPF4B-208ENST00000490653 DCAF8L2P0C7V8 631 aa15.36■□□□□ 0.05
PRPF4B-208ENST00000490653 BICRAQ9NZM4 1560 aa15.3■□□□□ 0.04
PRPF4B-208ENST00000490653 UNC13AQ9UPW8 1703 aa15.26■□□□□ 0.03
PRPF4B-208ENST00000490653 MYO15BQ96JP2 1530 aa15.17■□□□□ 0.02
PRPF4B-208ENST00000490653 U3KPZ7 1027 aaPredicted RBP15.06■□□□□ 0
PRPF4B-208ENST00000490653 KCNA4P22459 653 aa15.03■□□□□ -0
PRPF4B-208ENST00000490653 ZCCHC6Q5VYS8 1495 aaKnown RBP14.98□□□□□ -0.01
PRPF4B-208ENST00000490653 CC2D2AQ9P2K1 1620 aa14.94□□□□□ -0.02
PRPF4B-208ENST00000490653 CECR2Q9BXF3 1484 aa14.93□□□□□ -0.02
PRPF4B-208ENST00000490653 DCAF1Q9Y4B6 1507 aa14.91□□□□□ -0.02
PRPF4B-208ENST00000490653 SHROOM4Q9ULL8 1493 aa14.89□□□□□ -0.03
PRPF4B-208ENST00000490653 SPINK5Q9NQ38 1064 aaPredicted RBP14.87□□□□□ -0.03
PRPF4B-208ENST00000490653 EIF4G1Q04637 1599 aaKnown RBP14.85□□□□□ -0.03
PRPF4B-208ENST00000490653 SCRIBQ14160 1630 aa14.85□□□□□ -0.03
PRPF4B-208ENST00000490653 CAPN15O75808 1086 aa14.83□□□□□ -0.04
PRPF4B-208ENST00000490653 SLC4A2P04920 1241 aa14.83□□□□□ -0.04
PRPF4B-208ENST00000490653 DSG3P32926 999 aa14.83□□□□□ -0.04
PRPF4B-208ENST00000490653 DNAJC5Q9H3Z4 198 aa14.65□□□□□ -0.06
PRPF4B-208ENST00000490653 APLP2Q06481 763 aa14.61□□□□□ -0.07
PRPF4B-208ENST00000490653 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.57□□□□□ -0.08
PRPF4B-208ENST00000490653 HNRNPUL2Q1KMD3 747 aaKnown RBP14.57□□□□□ -0.08
PRPF4B-208ENST00000490653 ZNF219Q9P2Y4 722 aaPredicted RBP14.56□□□□□ -0.08
PRPF4B-208ENST00000490653 TRHP20396 242 aaPredicted RBP14.55□□□□□ -0.08
PRPF4B-208ENST00000490653 SAMD1Q6SPF0 538 aaPredicted RBP14.49□□□□□ -0.09
PRPF4B-208ENST00000490653 ABCB7O75027 752 aa14.47□□□□□ -0.09
PRPF4B-208ENST00000490653 POTEHQ6S545 545 aa14.42□□□□□ -0.1
PRPF4B-208ENST00000490653 NCAPD3P42695 1498 aa14.33□□□□□ -0.12
PRPF4B-208ENST00000490653 MYCNP04198 464 aaPredicted RBP14.32□□□□□ -0.12
PRPF4B-208ENST00000490653 CUX2O14529 1486 aa14.31□□□□□ -0.12
PRPF4B-208ENST00000490653 ATAD2BQ9ULI0 1458 aa14.27□□□□□ -0.12
PRPF4B-208ENST00000490653 NESP48681 1621 aa14.24□□□□□ -0.13
PRPF4B-208ENST00000490653 ERCC6Q03468 1493 aa14.21□□□□□ -0.13
PRPF4B-208ENST00000490653 RBM42Q9BTD8 480 aaKnown RBP14.15□□□□□ -0.14
PRPF4B-208ENST00000490653 HMGXB3Q12766 1538 aa14.15□□□□□ -0.14
PRPF4B-208ENST00000490653 POLA2Q14181 598 aa14.14□□□□□ -0.15
PRPF4B-208ENST00000490653 SLC4A1APQ9BWU0 796 aaKnown RBP14.14□□□□□ -0.15
PRPF4B-208ENST00000490653 SMARCA4P51532 1647 aa14.14□□□□□ -0.15
PRPF4B-208ENST00000490653 SMARCA2P51531 1590 aa14.09□□□□□ -0.15
PRPF4B-208ENST00000490653 FOXD4L1Q9NU39 408 aa14.09□□□□□ -0.15
PRPF4B-208ENST00000490653 THOC2Q8NI27 1593 aaKnown RBP14.08□□□□□ -0.16
PRPF4B-208ENST00000490653 BAZ1BQ9UIG0 1483 aaKnown RBP14.03□□□□□ -0.16
PRPF4B-208ENST00000490653 PEG3Q9GZU2 1588 aa14.03□□□□□ -0.16
PRPF4B-208ENST00000490653 MROH2BQ7Z745 1585 aa14.01□□□□□ -0.17
PRPF4B-208ENST00000490653 BAZ1AQ9NRL2 1556 aaPredicted RBP14□□□□□ -0.17
PRPF4B-208ENST00000490653 ATF5Q9Y2D1 282 aaPredicted RBP13.98□□□□□ -0.17
PRPF4B-208ENST00000490653 LAMC3Q9Y6N6 1575 aa13.95□□□□□ -0.18
PRPF4B-208ENST00000490653 KIF21AQ7Z4S6 1674 aa13.92□□□□□ -0.18
PRPF4B-208ENST00000490653 CHRDL2Q6WN34 429 aa13.89□□□□□ -0.19
PRPF4B-208ENST00000490653 PDS5BQ9NTI5 1447 aa13.87□□□□□ -0.19
PRPF4B-208ENST00000490653 CADPSQ9ULU8 1353 aa13.86□□□□□ -0.19
PRPF4B-208ENST00000490653 ZBTB12Q9Y330 459 aaPredicted RBP13.86□□□□□ -0.19
PRPF4B-208ENST00000490653 TRIM41Q8WV44 630 aa13.84□□□□□ -0.19
PRPF4B-208ENST00000490653 ZBTB22O15209 634 aa13.82□□□□□ -0.2
PRPF4B-208ENST00000490653 MRC2Q9UBG0 1479 aa13.81□□□□□ -0.2
PRPF4B-208ENST00000490653 WDR62O43379 1518 aa13.81□□□□□ -0.2
PRPF4B-208ENST00000490653 WIZO95785 1651 aa13.81□□□□□ -0.2
PRPF4B-208ENST00000490653 AKT1S1Q96B36 256 aa13.8□□□□□ -0.2
PRPF4B-208ENST00000490653 RSF1Q96T23 1441 aaPredicted RBP13.74□□□□□ -0.21
PRPF4B-208ENST00000490653 OSCARQ8IYS5 282 aa13.71□□□□□ -0.21
PRPF4B-208ENST00000490653 FANCD2Q9BXW9 1451 aa13.7□□□□□ -0.22
PRPF4B-208ENST00000490653 CEP164Q9UPV0 1460 aa13.68□□□□□ -0.22
PRPF4B-208ENST00000490653 ATXN8OSP0DMR3 200 aa13.68□□□□□ -0.22
PRPF4B-208ENST00000490653 CFTRP13569 1480 aa13.67□□□□□ -0.22
PRPF4B-208ENST00000490653 URB2Q14146 1524 aaKnown RBP13.67□□□□□ -0.22
PRPF4B-208ENST00000490653 REM2Q8IYK8 340 aaPredicted RBP13.65□□□□□ -0.22
PRPF4B-208ENST00000490653 TOP2AP11388 1531 aaKnown RBP13.57□□□□□ -0.24
PRPF4B-208ENST00000490653 ZNF608Q9ULD9 1512 aaPredicted RBP13.56□□□□□ -0.24
PRPF4B-208ENST00000490653 PIP4P2Q8N4L2 257 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms