RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 AEBP2Q6ZN18 517 aaPredicted RBP23.93■■□□□ 1.42
DEPDC1-204ENST00000489862 CHIC1Q5VXU3 224 aa22.58■■□□□ 1.21
DEPDC1-204ENST00000489862 SENP3Q9H4L4 574 aaPredicted RBP20.75■□□□□ 0.91
DEPDC1-204ENST00000489862 PHF23Q9BUL5 403 aaPredicted RBP20.28■□□□□ 0.84
DEPDC1-204ENST00000489862 POTEDQ86YR6 584 aa19.5■□□□□ 0.71
DEPDC1-204ENST00000489862 FOXD1Q16676 465 aa19.33■□□□□ 0.68
DEPDC1-204ENST00000489862 MSH5O43196 834 aa18.59■□□□□ 0.57
DEPDC1-204ENST00000489862 PIAS4Q8N2W9 510 aaPredicted RBP17.91■□□□□ 0.46
DEPDC1-204ENST00000489862 PPP6R1Q9UPN7 881 aa17.32■□□□□ 0.36
DEPDC1-204ENST00000489862 ADRA2BP18089 450 aa17.25■□□□□ 0.35
DEPDC1-204ENST00000489862 PLPPR3Q6T4P5 718 aa17.25■□□□□ 0.35
DEPDC1-204ENST00000489862 CACNB1Q02641 598 aaPredicted RBP16.45■□□□□ 0.22
DEPDC1-204ENST00000489862 DMRT2Q9Y5R5 561 aa16.27■□□□□ 0.19
DEPDC1-204ENST00000489862 MAPK8IP2Q13387 824 aaPredicted RBP16.08■□□□□ 0.17
DEPDC1-204ENST00000489862 SCAF1Q9H7N4 1312 aaKnown RBP16.03■□□□□ 0.16
DEPDC1-204ENST00000489862 DCAF8L1A6NGE4 600 aa15.7■□□□□ 0.1
DEPDC1-204ENST00000489862 RNF39Q9H2S5 420 aa15.67■□□□□ 0.1
DEPDC1-204ENST00000489862 C1QBPQ07021 282 aaKnown RBP15.49■□□□□ 0.07
DEPDC1-204ENST00000489862 HOXD11P31277 338 aaPredicted RBP15.32■□□□□ 0.04
DEPDC1-204ENST00000489862 POTEHQ6S545 545 aa15.15■□□□□ 0.02
DEPDC1-204ENST00000489862 DNAJC5BQ9UF47 199 aa15.06■□□□□ 0
DEPDC1-204ENST00000489862 RNF216Q9NWF9 866 aaPredicted RBP15□□□□□ -0.01
DEPDC1-204ENST00000489862 PPP4R3CPQ6ZMV5 832 aa14.95□□□□□ -0.02
DEPDC1-204ENST00000489862 CNKSR2Q8WXI2 1034 aa14.93□□□□□ -0.02
DEPDC1-204ENST00000489862 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.67□□□□□ -0.06
DEPDC1-204ENST00000489862 DSG3P32926 999 aa14.37□□□□□ -0.11
DEPDC1-204ENST00000489862 CAPN15O75808 1086 aa14.32□□□□□ -0.12
DEPDC1-204ENST00000489862 NCBP3Q53F19 620 aaKnown RBP14.25□□□□□ -0.13
DEPDC1-204ENST00000489862 SPINK5Q9NQ38 1064 aaPredicted RBP14.18□□□□□ -0.14
DEPDC1-204ENST00000489862 U3KPZ7 1027 aaPredicted RBP14.15□□□□□ -0.14
DEPDC1-204ENST00000489862 APLP2Q06481 763 aa13.93□□□□□ -0.18
DEPDC1-204ENST00000489862 RBM42Q9BTD8 480 aaKnown RBP13.9□□□□□ -0.19
DEPDC1-204ENST00000489862 NPM3O75607 178 aaKnown RBP13.86□□□□□ -0.19
DEPDC1-204ENST00000489862 ZNF219Q9P2Y4 722 aaPredicted RBP13.86□□□□□ -0.19
DEPDC1-204ENST00000489862 TRHP20396 242 aaPredicted RBP13.86□□□□□ -0.19
DEPDC1-204ENST00000489862 ABCB7O75027 752 aa13.83□□□□□ -0.2
DEPDC1-204ENST00000489862 CHRDL2Q6WN34 429 aa13.82□□□□□ -0.2
DEPDC1-204ENST00000489862 SP7Q8TDD2 431 aaPredicted RBP13.8□□□□□ -0.2
DEPDC1-204ENST00000489862 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.64□□□□□ -0.23
DEPDC1-204ENST00000489862 HNRNPUL2Q1KMD3 747 aaKnown RBP13.64□□□□□ -0.23
DEPDC1-204ENST00000489862 SAMD1Q6SPF0 538 aaPredicted RBP13.47□□□□□ -0.25
DEPDC1-204ENST00000489862 SLC4A2P04920 1241 aa13.42□□□□□ -0.26
DEPDC1-204ENST00000489862 HAX1O00165 279 aa13.35□□□□□ -0.27
DEPDC1-204ENST00000489862 AKT1S1Q96B36 256 aa13.32□□□□□ -0.28
DEPDC1-204ENST00000489862 PIP4P2Q8N4L2 257 aa13.27□□□□□ -0.29
DEPDC1-204ENST00000489862 POLA2Q14181 598 aa13.26□□□□□ -0.29
DEPDC1-204ENST00000489862 REM2Q8IYK8 340 aaPredicted RBP13.13□□□□□ -0.31
DEPDC1-204ENST00000489862 FXR2P51116 673 aaKnown RBP eCLIP13.07□□□□□ -0.32
DEPDC1-204ENST00000489862 ZBTB12Q9Y330 459 aaPredicted RBP13.07□□□□□ -0.32
DEPDC1-204ENST00000489862 PITPNM1O00562 1244 aa12.99□□□□□ -0.33
DEPDC1-204ENST00000489862 LHX8Q68G74 356 aa12.95□□□□□ -0.34
DEPDC1-204ENST00000489862 MYCNP04198 464 aaPredicted RBP12.94□□□□□ -0.34
DEPDC1-204ENST00000489862 EVX2Q03828 476 aa12.93□□□□□ -0.34
DEPDC1-204ENST00000489862 PLSCR2Q9NRY7 297 aa12.88□□□□□ -0.35
DEPDC1-204ENST00000489862 OSCARQ8IYS5 282 aa12.84□□□□□ -0.35
DEPDC1-204ENST00000489862 KCNA4P22459 653 aa12.78□□□□□ -0.36
DEPDC1-204ENST00000489862 GABBR2O75899 941 aa12.72□□□□□ -0.37
DEPDC1-204ENST00000489862 C19orf67A6NJJ6 358 aa12.69□□□□□ -0.38
DEPDC1-204ENST00000489862 PRKAR2AP13861 404 aaKnown RBP12.69□□□□□ -0.38
DEPDC1-204ENST00000489862 SPDYE1Q8NFV5 336 aaPredicted RBP12.54□□□□□ -0.4
DEPDC1-204ENST00000489862 ATF5Q9Y2D1 282 aaPredicted RBP12.53□□□□□ -0.4
DEPDC1-204ENST00000489862 SPDYE2BA6NHP3 402 aa12.52□□□□□ -0.4
DEPDC1-204ENST00000489862 SPDYE6P0CI01 402 aa12.52□□□□□ -0.4
DEPDC1-204ENST00000489862 SPDYE2Q495Y8 402 aa12.52□□□□□ -0.4
DEPDC1-204ENST00000489862 CLEC11AQ9Y240 323 aa12.52□□□□□ -0.4
DEPDC1-204ENST00000489862 CLCN6P51797 869 aa12.4□□□□□ -0.42
DEPDC1-204ENST00000489862 FBLN2P98095 1184 aa12.35□□□□□ -0.43
DEPDC1-204ENST00000489862 POTEIP0CG38 1075 aa12.34□□□□□ -0.43
DEPDC1-204ENST00000489862 FOXD4L1Q9NU39 408 aa12.31□□□□□ -0.44
DEPDC1-204ENST00000489862 CHADLQ6NUI6 762 aa12.29□□□□□ -0.44
DEPDC1-204ENST00000489862 DCBLD2Q96PD2 775 aa12.29□□□□□ -0.44
DEPDC1-204ENST00000489862 CD44P16070 742 aaKnown RBP12.24□□□□□ -0.45
DEPDC1-204ENST00000489862 POTEMA6NI47 508 aa12.22□□□□□ -0.45
DEPDC1-204ENST00000489862 PRR29P0C7W0 189 aa12.22□□□□□ -0.45
DEPDC1-204ENST00000489862 ZNF692Q9BU19 519 aaPredicted RBP12.22□□□□□ -0.45
DEPDC1-204ENST00000489862 PCDH10Q9P2E7 1040 aa12.21□□□□□ -0.46
DEPDC1-204ENST00000489862 SSUH2Q9Y2M2 353 aa12.18□□□□□ -0.46
DEPDC1-204ENST00000489862 POTEGQ6S5H5 508 aa12.15□□□□□ -0.46
DEPDC1-204ENST00000489862 OTUD5Q96G74 571 aa12.1□□□□□ -0.47
DEPDC1-204ENST00000489862 FARP1Q9Y4F1 1045 aaPredicted RBP12.08□□□□□ -0.48
DEPDC1-204ENST00000489862 ATXN8OSP0DMR3 200 aa12.07□□□□□ -0.48
DEPDC1-204ENST00000489862 ZNF579Q8NAF0 562 aaKnown RBP12□□□□□ -0.49
DEPDC1-204ENST00000489862 SLC4A1APQ9BWU0 796 aaKnown RBP11.98□□□□□ -0.49
DEPDC1-204ENST00000489862 PABPN1Q86U42 306 aaKnown RBP eCLIP11.97□□□□□ -0.49
DEPDC1-204ENST00000489862 ZRANB1Q9UGI0 708 aa11.94□□□□□ -0.5
DEPDC1-204ENST00000489862 MKRN4PQ13434 485 aaPredicted RBP11.93□□□□□ -0.5
DEPDC1-204ENST00000489862 POTEB2H3BUK9 544 aa11.9□□□□□ -0.5
DEPDC1-204ENST00000489862 GALR2O43603 387 aaPredicted RBP11.85□□□□□ -0.51
DEPDC1-204ENST00000489862 MAMSTRQ6ZN01 415 aa11.82□□□□□ -0.52
DEPDC1-204ENST00000489862 PAK3O75914 559 aaPredicted RBP11.77□□□□□ -0.53
DEPDC1-204ENST00000489862 FAM163AQ96GL9 167 aaPredicted RBP11.73□□□□□ -0.53
DEPDC1-204ENST00000489862 SLC39A7Q92504 469 aa11.69□□□□□ -0.54
DEPDC1-204ENST00000489862 C7P10643 843 aa11.68□□□□□ -0.54
DEPDC1-204ENST00000489862 METRNQ9UJH8 293 aa11.68□□□□□ -0.54
DEPDC1-204ENST00000489862 SCUBE2Q9NQ36 999 aa11.68□□□□□ -0.54
DEPDC1-204ENST00000489862 PELP1Q8IZL8 1130 aaKnown RBP11.66□□□□□ -0.54
DEPDC1-204ENST00000489862 ZBTB22O15209 634 aa11.64□□□□□ -0.55
DEPDC1-204ENST00000489862 LCE2DQ5TA82 110 aaPredicted RBP11.64□□□□□ -0.55
DEPDC1-204ENST00000489862 PHF12Q96QT6 1004 aa11.62□□□□□ -0.55
DEPDC1-204ENST00000489862 CREBZFQ9NS37 354 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms