RNA–Protein interactions for RNA: ENST00000488973.6

HMG20B-213, Transcript of high mobility group 20B, humanhuman

TSL 1 (best)

Gene HMG20B, Length 2,434 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMG20B-213ENST00000488973 NISCHQ9Y2I1 1504 aa39.46■■■■□ 3.91
HMG20B-213ENST00000488973 CCDC180Q9P1Z9 1646 aa34.15■■■■□ 3.06
HMG20B-213ENST00000488973 SHROOM4Q9ULL8 1493 aa33.55■■■□□ 2.96
HMG20B-213ENST00000488973 ZCCHC6Q5VYS8 1495 aaKnown RBP33.28■■■□□ 2.92
HMG20B-213ENST00000488973 SUPT5HO00267 1087 aaKnown RBP33.14■■■□□ 2.9
HMG20B-213ENST00000488973 DCAF1Q9Y4B6 1507 aa32.66■■■□□ 2.82
HMG20B-213ENST00000488973 MYO15BQ96JP2 1530 aa32.56■■■□□ 2.8
HMG20B-213ENST00000488973 CHIC1Q5VXU3 224 aa32.56■■■□□ 2.8
HMG20B-213ENST00000488973 HRCP23327 699 aa32.42■■■□□ 2.78
HMG20B-213ENST00000488973 DCAF8L2P0C7V8 631 aa32.41■■■□□ 2.78
HMG20B-213ENST00000488973 PELP1Q8IZL8 1130 aaKnown RBP32.05■■■□□ 2.72
HMG20B-213ENST00000488973 PCGF6Q9BYE7 350 aa31.98■■■□□ 2.71
HMG20B-213ENST00000488973 ABCC9O60706 1549 aa31.96■■■□□ 2.71
HMG20B-213ENST00000488973 NACADO15069 1562 aa31.76■■■□□ 2.68
HMG20B-213ENST00000488973 LOC105371045A0A1W2PR82 267 aa31.53■■■□□ 2.64
HMG20B-213ENST00000488973 PPARGC1BQ86YN6 1023 aaKnown RBP31.51■■■□□ 2.64
HMG20B-213ENST00000488973 SCRIBQ14160 1630 aa31.46■■■□□ 2.63
HMG20B-213ENST00000488973 RB1CC1Q8TDY2 1594 aa31.37■■■□□ 2.61
HMG20B-213ENST00000488973 TRIM26Q12899 539 aaPredicted RBP31.37■■■□□ 2.61
HMG20B-213ENST00000488973 MYT1Q01538 1121 aa31.29■■■□□ 2.6
HMG20B-213ENST00000488973 RSF1Q96T23 1441 aaPredicted RBP31.16■■■□□ 2.58
HMG20B-213ENST00000488973 ZEB1P37275 1124 aaPredicted RBP30.97■■■□□ 2.55
HMG20B-213ENST00000488973 TRIM41Q8WV44 630 aa30.92■■■□□ 2.54
HMG20B-213ENST00000488973 UNC13AQ9UPW8 1703 aa30.66■■■□□ 2.5
HMG20B-213ENST00000488973 CECR2Q9BXF3 1484 aa30.63■■■□□ 2.49
HMG20B-213ENST00000488973 FAM9AQ8IZU1 332 aaPredicted RBP30.57■■■□□ 2.48
HMG20B-213ENST00000488973 MROH2BQ7Z745 1585 aa30.49■■■□□ 2.47
HMG20B-213ENST00000488973 BICRAQ9NZM4 1560 aa30.43■■■□□ 2.46
HMG20B-213ENST00000488973 BAZ1AQ9NRL2 1556 aaPredicted RBP30.43■■■□□ 2.46
HMG20B-213ENST00000488973 WIZO95785 1651 aa30.36■■■□□ 2.45
HMG20B-213ENST00000488973 PABPN1Q86U42 306 aaKnown RBP eCLIP30.25■■■□□ 2.431e-7■■□□□ 14.1
HMG20B-213ENST00000488973 EIF4G1Q04637 1599 aaKnown RBP30.24■■■□□ 2.43
HMG20B-213ENST00000488973 SMARCA4P51532 1647 aa30.21■■■□□ 2.43
HMG20B-213ENST00000488973 EHMT2Q96KQ7 1210 aa30.21■■■□□ 2.43
HMG20B-213ENST00000488973 SCAF1Q9H7N4 1312 aaKnown RBP30.11■■■□□ 2.41
HMG20B-213ENST00000488973 TOP2AP11388 1531 aaKnown RBP29.96■■■□□ 2.39
HMG20B-213ENST00000488973 WRNQ14191 1432 aaPredicted RBP eCLIP29.91■■■□□ 2.38
HMG20B-213ENST00000488973 CCER1Q8TC90 406 aaPredicted RBP29.91■■■□□ 2.38
HMG20B-213ENST00000488973 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.9■■■□□ 2.38
HMG20B-213ENST00000488973 PEG3Q9GZU2 1588 aa29.87■■■□□ 2.37
HMG20B-213ENST00000488973 TTBK1Q5TCY1 1321 aaPredicted RBP29.8■■■□□ 2.36
HMG20B-213ENST00000488973 ABCC8Q09428 1581 aa29.8■■■□□ 2.36
HMG20B-213ENST00000488973 CCDC88BA6NC98 1476 aa29.77■■■□□ 2.36
HMG20B-213ENST00000488973 SMARCA2P51531 1590 aa29.76■■■□□ 2.36
HMG20B-213ENST00000488973 ACIN1Q9UKV3 1341 aaKnown RBP29.73■■■□□ 2.35
HMG20B-213ENST00000488973 CEP162Q5TB80 1403 aa29.73■■■□□ 2.35
HMG20B-213ENST00000488973 TNIKQ9UKE5 1360 aa29.69■■■□□ 2.34
HMG20B-213ENST00000488973 ATAD2BQ9ULI0 1458 aa29.66■■■□□ 2.34
HMG20B-213ENST00000488973 EEA1Q15075 1411 aa29.66■■■□□ 2.34
HMG20B-213ENST00000488973 DIEXFQ68CQ4 756 aaKnown RBP29.62■■■□□ 2.33
HMG20B-213ENST00000488973 SOGA1O94964 1423 aa29.59■■■□□ 2.33
HMG20B-213ENST00000488973 NEUROD1Q13562 356 aa29.58■■■□□ 2.33
HMG20B-213ENST00000488973 CENPBP07199 599 aaPredicted RBP29.51■■■□□ 2.31
HMG20B-213ENST00000488973 BAZ1BQ9UIG0 1483 aaKnown RBP29.49■■■□□ 2.31
HMG20B-213ENST00000488973 CSRNP3Q8WYN3 585 aa29.49■■■□□ 2.31
HMG20B-213ENST00000488973 GOLGA3Q08378 1498 aa29.44■■■□□ 2.3
HMG20B-213ENST00000488973 RUSC2Q8N2Y8 1516 aa29.41■■■□□ 2.3
HMG20B-213ENST00000488973 NCAPD3P42695 1498 aa29.36■■■□□ 2.29
HMG20B-213ENST00000488973 UBTFP17480 764 aaKnown RBP29.35■■■□□ 2.29
HMG20B-213ENST00000488973 GTF3C3Q9Y5Q9 886 aa29.34■■■□□ 2.29
HMG20B-213ENST00000488973 HMGXB3Q12766 1538 aa29.32■■■□□ 2.28
HMG20B-213ENST00000488973 ZNF316A6NFI3 1004 aaPredicted RBP29.31■■■□□ 2.28
HMG20B-213ENST00000488973 KIF21BO75037 1637 aa29.26■■■□□ 2.27
HMG20B-213ENST00000488973 CEP164Q9UPV0 1460 aa29.22■■■□□ 2.27
HMG20B-213ENST00000488973 SYNJ1O43426 1573 aa29.13■■■□□ 2.25
HMG20B-213ENST00000488973 CLIP1P30622 1438 aa29.07■■■□□ 2.24
HMG20B-213ENST00000488973 VPS8Q8N3P4 1428 aa29.04■■■□□ 2.24
HMG20B-213ENST00000488973 HNRNPUL2Q1KMD3 747 aaKnown RBP28.95■■■□□ 2.23
HMG20B-213ENST00000488973 CC2D2AQ9P2K1 1620 aa28.92■■■□□ 2.22
HMG20B-213ENST00000488973 MIER1Q8N108 512 aa28.89■■■□□ 2.21
HMG20B-213ENST00000488973 RAPGEF2Q9Y4G8 1499 aa28.87■■■□□ 2.21
HMG20B-213ENST00000488973 APLP2Q06481 763 aa28.86■■■□□ 2.21
HMG20B-213ENST00000488973 YTHDC1Q96MU7 727 aaKnown RBP28.83■■■□□ 2.21
HMG20B-213ENST00000488973 CFTRP13569 1480 aa28.81■■■□□ 2.2
HMG20B-213ENST00000488973 TOP2BQ02880 1626 aa28.79■■■□□ 2.2
HMG20B-213ENST00000488973 CLSPNQ9HAW4 1339 aa28.75■■■□□ 2.19
HMG20B-213ENST00000488973 BIVM-ERCC5R4GMW8 1640 aa28.72■■■□□ 2.19
HMG20B-213ENST00000488973 ERICH3Q5RHP9 1530 aa28.7■■■□□ 2.18
HMG20B-213ENST00000488973 BCL11AQ9H165 835 aa28.64■■■□□ 2.18
HMG20B-213ENST00000488973 CADPSQ9ULU8 1353 aa28.63■■■□□ 2.17
HMG20B-213ENST00000488973 PRXQ9BXM0 1461 aa28.59■■■□□ 2.17
HMG20B-213ENST00000488973 DHX57Q6P158 1386 aaKnown RBP28.58■■■□□ 2.17
HMG20B-213ENST00000488973 ARAP1Q96P48 1450 aa28.57■■■□□ 2.16
HMG20B-213ENST00000488973 PRDM2Q13029 1718 aa28.54■■■□□ 2.16
HMG20B-213ENST00000488973 RANGAP1P46060 587 aaPredicted RBP28.51■■■□□ 2.15
HMG20B-213ENST00000488973 CUX1P39880 1505 aa28.48■■■□□ 2.15
HMG20B-213ENST00000488973 RRBP1Q9P2E9 1410 aaKnown RBP28.47■■■□□ 2.15
HMG20B-213ENST00000488973 CUX2O14529 1486 aa28.42■■■□□ 2.14
HMG20B-213ENST00000488973 KANK4Q5T7N3 995 aaPredicted RBP28.39■■■□□ 2.13
HMG20B-213ENST00000488973 PRKCSHP14314 528 aaPredicted RBP28.38■■■□□ 2.13
HMG20B-213ENST00000488973 KIF27Q86VH2 1401 aa28.33■■■□□ 2.13
HMG20B-213ENST00000488973 FANCD2Q9BXW9 1451 aa28.28■■■□□ 2.12
HMG20B-213ENST00000488973 CCNB3Q8WWL7 1395 aa28.26■■■□□ 2.11
HMG20B-213ENST00000488973 ARHGAP35Q9NRY4 1499 aa28.24■■■□□ 2.11
HMG20B-213ENST00000488973 LAMC3Q9Y6N6 1575 aa28.24■■■□□ 2.11
HMG20B-213ENST00000488973 NESP48681 1621 aa28.19■■■□□ 2.1
HMG20B-213ENST00000488973 SUPT16HQ9Y5B9 1047 aaKnown RBP28.19■■■□□ 2.1
HMG20B-213ENST00000488973 MAP3K1Q13233 1512 aa28.14■■■□□ 2.09
HMG20B-213ENST00000488973 DNAJC5BQ9UF47 199 aa28.11■■■□□ 2.09
HMG20B-213ENST00000488973 FGD5Q6ZNL6 1462 aa28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 142.1 ms