RNA–Protein interactions for RNA: ENST00000488035.5

R3HDM1-219, Transcript of R3H domain containing 1, humanhuman

TSL 3

Gene R3HDM1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-219ENST00000488035 AEBP2Q6ZN18 517 aaPredicted RBP21.53■■□□□ 1.04
R3HDM1-219ENST00000488035 CHIC1Q5VXU3 224 aa20.1■□□□□ 0.81
R3HDM1-219ENST00000488035 SENP3Q9H4L4 574 aaPredicted RBP18.46■□□□□ 0.55
R3HDM1-219ENST00000488035 PHF23Q9BUL5 403 aaPredicted RBP18.12■□□□□ 0.49
R3HDM1-219ENST00000488035 FOXD1Q16676 465 aa17.23■□□□□ 0.35
R3HDM1-219ENST00000488035 POTEDQ86YR6 584 aa16.65■□□□□ 0.26
R3HDM1-219ENST00000488035 MSH5O43196 834 aa16.32■□□□□ 0.2
R3HDM1-219ENST00000488035 PIAS4Q8N2W9 510 aaPredicted RBP15.93■□□□□ 0.14
R3HDM1-219ENST00000488035 PLPPR3Q6T4P5 718 aa15.8■□□□□ 0.12
R3HDM1-219ENST00000488035 PPP6R1Q9UPN7 881 aa15.76■□□□□ 0.11
R3HDM1-219ENST00000488035 ADRA2BP18089 450 aa15.63■□□□□ 0.09
R3HDM1-219ENST00000488035 DMRT2Q9Y5R5 561 aa14.59□□□□□ -0.07
R3HDM1-219ENST00000488035 MAPK8IP2Q13387 824 aaPredicted RBP14.55□□□□□ -0.08
R3HDM1-219ENST00000488035 SCAF1Q9H7N4 1312 aaKnown RBP14.36□□□□□ -0.11
R3HDM1-219ENST00000488035 CACNB1Q02641 598 aaPredicted RBP14.18□□□□□ -0.14
R3HDM1-219ENST00000488035 HOXD11P31277 338 aaPredicted RBP13.91□□□□□ -0.18
R3HDM1-219ENST00000488035 RNF39Q9H2S5 420 aa13.9□□□□□ -0.18
R3HDM1-219ENST00000488035 DCAF8L1A6NGE4 600 aa13.79□□□□□ -0.2
R3HDM1-219ENST00000488035 PPP4R3CPQ6ZMV5 832 aa13.76□□□□□ -0.21
R3HDM1-219ENST00000488035 C1QBPQ07021 282 aaKnown RBP13.68□□□□□ -0.22
R3HDM1-219ENST00000488035 RNF216Q9NWF9 866 aaPredicted RBP13.65□□□□□ -0.22
R3HDM1-219ENST00000488035 CNKSR2Q8WXI2 1034 aa13.64□□□□□ -0.23
R3HDM1-219ENST00000488035 DNAJC5BQ9UF47 199 aa13.64□□□□□ -0.23
R3HDM1-219ENST00000488035 NCBP3Q53F19 620 aaKnown RBP13.1□□□□□ -0.31
R3HDM1-219ENST00000488035 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.1□□□□□ -0.316e-8■■■□□ 17.7
R3HDM1-219ENST00000488035 POTEHQ6S545 545 aa12.94□□□□□ -0.34
R3HDM1-219ENST00000488035 NPM3O75607 178 aaKnown RBP12.92□□□□□ -0.34
R3HDM1-219ENST00000488035 U3KPZ7 1027 aaPredicted RBP12.85□□□□□ -0.35
R3HDM1-219ENST00000488035 DSG3P32926 999 aa12.84□□□□□ -0.35
R3HDM1-219ENST00000488035 SPINK5Q9NQ38 1064 aaPredicted RBP12.75□□□□□ -0.37
R3HDM1-219ENST00000488035 CAPN15O75808 1086 aa12.7□□□□□ -0.38
R3HDM1-219ENST00000488035 SLC4A2P04920 1241 aa12.48□□□□□ -0.41
R3HDM1-219ENST00000488035 APLP2Q06481 763 aa12.46□□□□□ -0.41
R3HDM1-219ENST00000488035 ZNF219Q9P2Y4 722 aaPredicted RBP12.44□□□□□ -0.42
R3HDM1-219ENST00000488035 TRHP20396 242 aaPredicted RBP12.37□□□□□ -0.43
R3HDM1-219ENST00000488035 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.35□□□□□ -0.43
R3HDM1-219ENST00000488035 HNRNPUL2Q1KMD3 747 aaKnown RBP12.35□□□□□ -0.43
R3HDM1-219ENST00000488035 ABCB7O75027 752 aa12.34□□□□□ -0.43
R3HDM1-219ENST00000488035 RBM42Q9BTD8 480 aaKnown RBP12.27□□□□□ -0.45
R3HDM1-219ENST00000488035 SAMD1Q6SPF0 538 aaPredicted RBP12.26□□□□□ -0.45
R3HDM1-219ENST00000488035 KCNA4P22459 653 aa12.24□□□□□ -0.45
R3HDM1-219ENST00000488035 CHRDL2Q6WN34 429 aa12.15□□□□□ -0.46
R3HDM1-219ENST00000488035 POLA2Q14181 598 aa12□□□□□ -0.49
R3HDM1-219ENST00000488035 MYCNP04198 464 aaPredicted RBP11.97□□□□□ -0.49
R3HDM1-219ENST00000488035 SP7Q8TDD2 431 aaPredicted RBP11.94□□□□□ -0.5
R3HDM1-219ENST00000488035 AKT1S1Q96B36 256 aa11.9□□□□□ -0.5
R3HDM1-219ENST00000488035 ZBTB12Q9Y330 459 aaPredicted RBP11.8□□□□□ -0.52
R3HDM1-219ENST00000488035 REM2Q8IYK8 340 aaPredicted RBP11.76□□□□□ -0.53
R3HDM1-219ENST00000488035 PIP4P2Q8N4L2 257 aa11.76□□□□□ -0.53
R3HDM1-219ENST00000488035 FXR2P51116 673 aaKnown RBP eCLIP11.68□□□□□ -0.54
R3HDM1-219ENST00000488035 ATF5Q9Y2D1 282 aaPredicted RBP11.68□□□□□ -0.54
R3HDM1-219ENST00000488035 PITPNM1O00562 1244 aa11.62□□□□□ -0.55
R3HDM1-219ENST00000488035 OSCARQ8IYS5 282 aa11.62□□□□□ -0.55
R3HDM1-219ENST00000488035 EVX2Q03828 476 aa11.61□□□□□ -0.55
R3HDM1-219ENST00000488035 FOXD4L1Q9NU39 408 aa11.6□□□□□ -0.55
R3HDM1-219ENST00000488035 HAX1O00165 279 aa11.59□□□□□ -0.55
R3HDM1-219ENST00000488035 SLC4A1APQ9BWU0 796 aaKnown RBP11.47□□□□□ -0.57
R3HDM1-219ENST00000488035 SPDYE2BA6NHP3 402 aa11.4□□□□□ -0.58
R3HDM1-219ENST00000488035 SPDYE6P0CI01 402 aa11.4□□□□□ -0.58
R3HDM1-219ENST00000488035 SPDYE2Q495Y8 402 aa11.4□□□□□ -0.58
R3HDM1-219ENST00000488035 ATXN8OSP0DMR3 200 aa11.37□□□□□ -0.59
R3HDM1-219ENST00000488035 C19orf67A6NJJ6 358 aa11.31□□□□□ -0.6
R3HDM1-219ENST00000488035 PRKAR2AP13861 404 aaKnown RBP11.29□□□□□ -0.6
R3HDM1-219ENST00000488035 SPDYE1Q8NFV5 336 aaPredicted RBP11.28□□□□□ -0.6
R3HDM1-219ENST00000488035 ZBTB22O15209 634 aa11.27□□□□□ -0.61
R3HDM1-219ENST00000488035 FBLN2P98095 1184 aa11.25□□□□□ -0.61
R3HDM1-219ENST00000488035 SSUH2Q9Y2M2 353 aa11.23□□□□□ -0.61
R3HDM1-219ENST00000488035 GABBR2O75899 941 aa11.21□□□□□ -0.61
R3HDM1-219ENST00000488035 MKRN4PQ13434 485 aaPredicted RBP11.17□□□□□ -0.62
R3HDM1-219ENST00000488035 LHX8Q68G74 356 aa11.17□□□□□ -0.62
R3HDM1-219ENST00000488035 CLEC11AQ9Y240 323 aa11.15□□□□□ -0.62
R3HDM1-219ENST00000488035 ZNF692Q9BU19 519 aaPredicted RBP11.11□□□□□ -0.63
R3HDM1-219ENST00000488035 CHADLQ6NUI6 762 aa11.04□□□□□ -0.64
R3HDM1-219ENST00000488035 POTEIP0CG38 1075 aa11.02□□□□□ -0.65
R3HDM1-219ENST00000488035 CLCN6P51797 869 aa11□□□□□ -0.65
R3HDM1-219ENST00000488035 PRR29P0C7W0 189 aa10.98□□□□□ -0.65
R3HDM1-219ENST00000488035 PABPN1Q86U42 306 aaKnown RBP eCLIP10.93□□□□□ -0.66
R3HDM1-219ENST00000488035 CD44P16070 742 aaKnown RBP10.9□□□□□ -0.66
R3HDM1-219ENST00000488035 FARP1Q9Y4F1 1045 aaPredicted RBP10.9□□□□□ -0.66
R3HDM1-219ENST00000488035 ZNF579Q8NAF0 562 aaKnown RBP10.8□□□□□ -0.68
R3HDM1-219ENST00000488035 PLSCR2Q9NRY7 297 aa10.8□□□□□ -0.68
R3HDM1-219ENST00000488035 DCBLD2Q96PD2 775 aa10.75□□□□□ -0.69
R3HDM1-219ENST00000488035 POTEB2H3BUK9 544 aa10.68□□□□□ -0.7
R3HDM1-219ENST00000488035 CREBZFQ9NS37 354 aa10.66□□□□□ -0.7
R3HDM1-219ENST00000488035 ZRANB1Q9UGI0 708 aa10.66□□□□□ -0.7
R3HDM1-219ENST00000488035 OTUD5Q96G74 571 aa10.65□□□□□ -0.7
R3HDM1-219ENST00000488035 GALR2O43603 387 aaPredicted RBP10.62□□□□□ -0.71
R3HDM1-219ENST00000488035 STAG3Q9UJ98 1225 aa10.61□□□□□ -0.71
R3HDM1-219ENST00000488035 PELP1Q8IZL8 1130 aaKnown RBP10.52□□□□□ -0.73
R3HDM1-219ENST00000488035 POTEMA6NI47 508 aa10.51□□□□□ -0.73
R3HDM1-219ENST00000488035 PCDH10Q9P2E7 1040 aa10.49□□□□□ -0.73
R3HDM1-219ENST00000488035 PAK3O75914 559 aaPredicted RBP10.48□□□□□ -0.73
R3HDM1-219ENST00000488035 MNX1P50219 401 aaPredicted RBP10.47□□□□□ -0.73
R3HDM1-219ENST00000488035 POTEGQ6S5H5 508 aa10.47□□□□□ -0.73
R3HDM1-219ENST00000488035 PHF12Q96QT6 1004 aa10.47□□□□□ -0.73
R3HDM1-219ENST00000488035 POTEJP0CG39 1038 aa10.46□□□□□ -0.73
R3HDM1-219ENST00000488035 ASTLQ6HA08 431 aaPredicted RBP10.45□□□□□ -0.74
R3HDM1-219ENST00000488035 CSRNP3Q8WYN3 585 aa10.44□□□□□ -0.74
R3HDM1-219ENST00000488035 NPM1P06748 294 aaKnown RBP eCLIP10.42□□□□□ -0.74
R3HDM1-219ENST00000488035 C7P10643 843 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms