RNA–Protein interactions for RNA: ENST00000486901.1

HSPG2-211, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 3,586 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-211ENST00000486901 NISCHQ9Y2I1 1504 aa23.68■■□□□ 1.38
HSPG2-211ENST00000486901 SHROOM4Q9ULL8 1493 aa21.68■■□□□ 1.06
HSPG2-211ENST00000486901 SUPT5HO00267 1087 aaKnown RBP21.49■■□□□ 1.03
HSPG2-211ENST00000486901 DCAF8L2P0C7V8 631 aa21.2■□□□□ 0.98
HSPG2-211ENST00000486901 PCGF6Q9BYE7 350 aa20.85■□□□□ 0.93
HSPG2-211ENST00000486901 PPARGC1BQ86YN6 1023 aaKnown RBP20.8■□□□□ 0.92
HSPG2-211ENST00000486901 HRCP23327 699 aa20.69■□□□□ 0.9
HSPG2-211ENST00000486901 MYO15BQ96JP2 1530 aa20.61■□□□□ 0.89
HSPG2-211ENST00000486901 CHIC1Q5VXU3 224 aa20.6■□□□□ 0.89
HSPG2-211ENST00000486901 LOC105371045A0A1W2PR82 267 aa20.46■□□□□ 0.87
HSPG2-211ENST00000486901 EHMT2Q96KQ7 1210 aa20.29■□□□□ 0.84
HSPG2-211ENST00000486901 FAM9AQ8IZU1 332 aaPredicted RBP20.04■□□□□ 0.8
HSPG2-211ENST00000486901 ZCCHC6Q5VYS8 1495 aaKnown RBP20■□□□□ 0.79
HSPG2-211ENST00000486901 CCDC180Q9P1Z9 1646 aa19.85■□□□□ 0.77
HSPG2-211ENST00000486901 TRIM26Q12899 539 aaPredicted RBP19.84■□□□□ 0.77
HSPG2-211ENST00000486901 TTBK1Q5TCY1 1321 aaPredicted RBP19.65■□□□□ 0.74
HSPG2-211ENST00000486901 DCAF1Q9Y4B6 1507 aa19.64■□□□□ 0.73
HSPG2-211ENST00000486901 TRIM41Q8WV44 630 aa19.63■□□□□ 0.73
HSPG2-211ENST00000486901 SCAF1Q9H7N4 1312 aaKnown RBP19.58■□□□□ 0.73
HSPG2-211ENST00000486901 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.46■□□□□ 0.71
HSPG2-211ENST00000486901 ZEB1P37275 1124 aaPredicted RBP19.35■□□□□ 0.69
HSPG2-211ENST00000486901 CCER1Q8TC90 406 aaPredicted RBP19.3■□□□□ 0.68
HSPG2-211ENST00000486901 NEUROD1Q13562 356 aa19.22■□□□□ 0.67
HSPG2-211ENST00000486901 RSF1Q96T23 1441 aaPredicted RBP19.14■□□□□ 0.65
HSPG2-211ENST00000486901 YTHDC1Q96MU7 727 aaKnown RBP19.13■□□□□ 0.65
HSPG2-211ENST00000486901 PELP1Q8IZL8 1130 aaKnown RBP19.12■□□□□ 0.65
HSPG2-211ENST00000486901 GTF3C3Q9Y5Q9 886 aa19.12■□□□□ 0.65
HSPG2-211ENST00000486901 SCRIBQ14160 1630 aa19.1■□□□□ 0.65
HSPG2-211ENST00000486901 ACIN1Q9UKV3 1341 aaKnown RBP19.06■□□□□ 0.64
HSPG2-211ENST00000486901 RB1CC1Q8TDY2 1594 aa19.05■□□□□ 0.64
HSPG2-211ENST00000486901 DIEXFQ68CQ4 756 aaKnown RBP19.04■□□□□ 0.64
HSPG2-211ENST00000486901 ABCC9O60706 1549 aa18.91■□□□□ 0.62
HSPG2-211ENST00000486901 RANGAP1P46060 587 aaPredicted RBP18.9■□□□□ 0.62
HSPG2-211ENST00000486901 CECR2Q9BXF3 1484 aa18.87■□□□□ 0.61
HSPG2-211ENST00000486901 CENPBP07199 599 aaPredicted RBP18.85■□□□□ 0.61
HSPG2-211ENST00000486901 HNRNPUL2Q1KMD3 747 aaKnown RBP18.8■□□□□ 0.6
HSPG2-211ENST00000486901 UBTFP17480 764 aaKnown RBP18.8■□□□□ 0.6
HSPG2-211ENST00000486901 MROH2BQ7Z745 1585 aa18.68■□□□□ 0.58
HSPG2-211ENST00000486901 MIER1Q8N108 512 aa18.67■□□□□ 0.58
HSPG2-211ENST00000486901 ZNF316A6NFI3 1004 aaPredicted RBP18.62■□□□□ 0.57
HSPG2-211ENST00000486901 WIZO95785 1651 aa18.59■□□□□ 0.57
HSPG2-211ENST00000486901 ABCC8Q09428 1581 aa18.57■□□□□ 0.56
HSPG2-211ENST00000486901 SOGA1O94964 1423 aa18.54■□□□□ 0.56
HSPG2-211ENST00000486901 CCDC88BA6NC98 1476 aa18.53■□□□□ 0.56
HSPG2-211ENST00000486901 PABPN1Q86U42 306 aaKnown RBP eCLIP18.52■□□□□ 0.562e-6■■□□□ 13.6
HSPG2-211ENST00000486901 CEP162Q5TB80 1403 aa18.51■□□□□ 0.55
HSPG2-211ENST00000486901 RUSC2Q8N2Y8 1516 aa18.47■□□□□ 0.55
HSPG2-211ENST00000486901 CSRNP3Q8WYN3 585 aa18.45■□□□□ 0.54
HSPG2-211ENST00000486901 NACADO15069 1562 aa18.39■□□□□ 0.53
HSPG2-211ENST00000486901 APLP2Q06481 763 aa18.34■□□□□ 0.53
HSPG2-211ENST00000486901 ITGAEP38570 1179 aa18.32■□□□□ 0.52
HSPG2-211ENST00000486901 BCANQ96GW7 911 aa18.25■□□□□ 0.51
HSPG2-211ENST00000486901 TNIKQ9UKE5 1360 aa18.24■□□□□ 0.51
HSPG2-211ENST00000486901 WRNQ14191 1432 aaPredicted RBP eCLIP18.19■□□□□ 0.5
HSPG2-211ENST00000486901 KCNH8Q96L42 1107 aa18.17■□□□□ 0.5
HSPG2-211ENST00000486901 BAZ1AQ9NRL2 1556 aaPredicted RBP18.13■□□□□ 0.49
HSPG2-211ENST00000486901 SUPT16HQ9Y5B9 1047 aaKnown RBP18.11■□□□□ 0.49
HSPG2-211ENST00000486901 MYT1Q01538 1121 aa18.1■□□□□ 0.49
HSPG2-211ENST00000486901 CLIP1P30622 1438 aa18.09■□□□□ 0.49
HSPG2-211ENST00000486901 GOLGA3Q08378 1498 aa18.06■□□□□ 0.48
HSPG2-211ENST00000486901 HIRIP3Q9BW71 556 aaPredicted RBP18.06■□□□□ 0.48
HSPG2-211ENST00000486901 EIF4G1Q04637 1599 aaKnown RBP18.05■□□□□ 0.48
HSPG2-211ENST00000486901 KANK4Q5T7N3 995 aaPredicted RBP18.04■□□□□ 0.48
HSPG2-211ENST00000486901 SMARCA2P51531 1590 aa18.01■□□□□ 0.47
HSPG2-211ENST00000486901 TOP2AP11388 1531 aaKnown RBP17.98■□□□□ 0.47
HSPG2-211ENST00000486901 RAPGEF2Q9Y4G8 1499 aa17.95■□□□□ 0.46
HSPG2-211ENST00000486901 TSHZ2Q9NRE2 1034 aa17.95■□□□□ 0.46
HSPG2-211ENST00000486901 ATP1B4Q9UN42 357 aaPredicted RBP17.94■□□□□ 0.46
HSPG2-211ENST00000486901 DDX10Q13206 875 aaKnown RBP17.91■□□□□ 0.46
HSPG2-211ENST00000486901 FKBP8Q14318 412 aa17.9■□□□□ 0.46
HSPG2-211ENST00000486901 SMARCA4P51532 1647 aa17.89■□□□□ 0.45
HSPG2-211ENST00000486901 VPS8Q8N3P4 1428 aa17.89■□□□□ 0.45
HSPG2-211ENST00000486901 DHX57Q6P158 1386 aaKnown RBP17.88■□□□□ 0.45
HSPG2-211ENST00000486901 TRIM52Q96A61 297 aa17.88■□□□□ 0.45
HSPG2-211ENST00000486901 EEA1Q15075 1411 aa17.87■□□□□ 0.45
HSPG2-211ENST00000486901 CEP164Q9UPV0 1460 aa17.87■□□□□ 0.45
HSPG2-211ENST00000486901 SIN3AQ96ST3 1273 aa17.84■□□□□ 0.45
HSPG2-211ENST00000486901 SYNJ1O43426 1573 aa17.82■□□□□ 0.44
HSPG2-211ENST00000486901 P3H3Q8IVL6 736 aa17.81■□□□□ 0.44
HSPG2-211ENST00000486901 FAM50AQ14320 339 aaKnown RBP17.78■□□□□ 0.44
HSPG2-211ENST00000486901 UNC13AQ9UPW8 1703 aa17.77■□□□□ 0.43
HSPG2-211ENST00000486901 IRX6P78412 446 aaPredicted RBP17.75■□□□□ 0.43
HSPG2-211ENST00000486901 KIF21BO75037 1637 aa17.74■□□□□ 0.43
HSPG2-211ENST00000486901 ANP32EQ9BTT0 268 aa17.73■□□□□ 0.43
HSPG2-211ENST00000486901 CNGB1Q14028 1251 aaPredicted RBP17.65■□□□□ 0.42
HSPG2-211ENST00000486901 NEFLP07196 543 aa17.64■□□□□ 0.41
HSPG2-211ENST00000486901 RAB3GAP2Q9H2M9 1393 aa17.61■□□□□ 0.41
HSPG2-211ENST00000486901 ARAP1Q96P48 1450 aa17.61■□□□□ 0.41
HSPG2-211ENST00000486901 BCL11AQ9H165 835 aa17.6■□□□□ 0.41
HSPG2-211ENST00000486901 CCNB3Q8WWL7 1395 aa17.6■□□□□ 0.41
HSPG2-211ENST00000486901 RBM19Q9Y4C8 960 aaKnown RBP17.59■□□□□ 0.41
HSPG2-211ENST00000486901 BICRAQ9NZM4 1560 aa17.57■□□□□ 0.4
HSPG2-211ENST00000486901 SENP3-EIF4A1A0A087X0R7 540 aa17.57■□□□□ 0.4
HSPG2-211ENST00000486901 BAZ1BQ9UIG0 1483 aaKnown RBP17.55■□□□□ 0.4
HSPG2-211ENST00000486901 CLSPNQ9HAW4 1339 aa17.55■□□□□ 0.4
HSPG2-211ENST00000486901 ANP32CO43423 234 aa17.51■□□□□ 0.39
HSPG2-211ENST00000486901 ATAD2BQ9ULI0 1458 aa17.49■□□□□ 0.39
HSPG2-211ENST00000486901 HNRNPUQ00839 825 aaKnown RBP eCLIP17.47■□□□□ 0.39
HSPG2-211ENST00000486901 WDR97A6NE52 1622 aa17.45■□□□□ 0.38
HSPG2-211ENST00000486901 PEG3Q9GZU2 1588 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms