RNA–Protein interactions for RNA: ENST00000485407.1

NHLRC3-205, Transcript of NHL repeat containing 3, humanhuman

TSL 3

Gene NHLRC3, Length 623 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC3-205ENST00000485407 AEBP2Q6ZN18 517 aaPredicted RBP20.35■□□□□ 0.85
NHLRC3-205ENST00000485407 CHIC1Q5VXU3 224 aa19.47■□□□□ 0.71
NHLRC3-205ENST00000485407 SENP3Q9H4L4 574 aaPredicted RBP17.32■□□□□ 0.36
NHLRC3-205ENST00000485407 PHF23Q9BUL5 403 aaPredicted RBP17.11■□□□□ 0.33
NHLRC3-205ENST00000485407 FOXD1Q16676 465 aa16.13■□□□□ 0.17
NHLRC3-205ENST00000485407 PLPPR3Q6T4P5 718 aa15.62■□□□□ 0.09
NHLRC3-205ENST00000485407 PPP6R1Q9UPN7 881 aa15.2■□□□□ 0.02
NHLRC3-205ENST00000485407 ADRA2BP18089 450 aa15.16■□□□□ 0.02
NHLRC3-205ENST00000485407 PIAS4Q8N2W9 510 aaPredicted RBP15.11■□□□□ 0.01
NHLRC3-205ENST00000485407 MSH5O43196 834 aa15.02■□□□□ -0
NHLRC3-205ENST00000485407 POTEDQ86YR6 584 aa14.4□□□□□ -0.1
NHLRC3-205ENST00000485407 MAPK8IP2Q13387 824 aaPredicted RBP13.87□□□□□ -0.19
NHLRC3-205ENST00000485407 SCAF1Q9H7N4 1312 aaKnown RBP13.85□□□□□ -0.19
NHLRC3-205ENST00000485407 DMRT2Q9Y5R5 561 aa13.77□□□□□ -0.21
NHLRC3-205ENST00000485407 PPP4R3CPQ6ZMV5 832 aa13.72□□□□□ -0.21
NHLRC3-205ENST00000485407 CNKSR2Q8WXI2 1034 aa13.43□□□□□ -0.26
NHLRC3-205ENST00000485407 EHMT2Q96KQ7 1210 aa13.4□□□□□ -0.26
NHLRC3-205ENST00000485407 HOXD11P31277 338 aaPredicted RBP13.33□□□□□ -0.28
NHLRC3-205ENST00000485407 RNF216Q9NWF9 866 aaPredicted RBP13.27□□□□□ -0.29
NHLRC3-205ENST00000485407 NCBP3Q53F19 620 aaKnown RBP13.22□□□□□ -0.29
NHLRC3-205ENST00000485407 DCAF8L1A6NGE4 600 aa13.16□□□□□ -0.3
NHLRC3-205ENST00000485407 KCNA4P22459 653 aa13.15□□□□□ -0.3
NHLRC3-205ENST00000485407 NPM3O75607 178 aaKnown RBP13.05□□□□□ -0.32
NHLRC3-205ENST00000485407 NISCHQ9Y2I1 1504 aa12.85□□□□□ -0.35
NHLRC3-205ENST00000485407 RNF39Q9H2S5 420 aa12.85□□□□□ -0.35
NHLRC3-205ENST00000485407 DNAJC5BQ9UF47 199 aa12.84□□□□□ -0.35
NHLRC3-205ENST00000485407 CACNB1Q02641 598 aaPredicted RBP12.77□□□□□ -0.37
NHLRC3-205ENST00000485407 CSRNP3Q8WYN3 585 aa12.74□□□□□ -0.37
NHLRC3-205ENST00000485407 SLC4A1APQ9BWU0 796 aaKnown RBP12.71□□□□□ -0.37
NHLRC3-205ENST00000485407 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.67□□□□□ -0.38
NHLRC3-205ENST00000485407 C1QBPQ07021 282 aaKnown RBP12.66□□□□□ -0.38
NHLRC3-205ENST00000485407 U3KPZ7 1027 aaPredicted RBP12.45□□□□□ -0.42
NHLRC3-205ENST00000485407 SLC4A2P04920 1241 aa12.43□□□□□ -0.42
NHLRC3-205ENST00000485407 SLC24A1O60721 1099 aa12.27□□□□□ -0.45
NHLRC3-205ENST00000485407 SPINK5Q9NQ38 1064 aaPredicted RBP12.21□□□□□ -0.45
NHLRC3-205ENST00000485407 CAPN15O75808 1086 aa12.17□□□□□ -0.46
NHLRC3-205ENST00000485407 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.13□□□□□ -0.47
NHLRC3-205ENST00000485407 HNRNPUL2Q1KMD3 747 aaKnown RBP12.13□□□□□ -0.47
NHLRC3-205ENST00000485407 ZBTB22O15209 634 aa12.1□□□□□ -0.47
NHLRC3-205ENST00000485407 APLP2Q06481 763 aa12.1□□□□□ -0.47
NHLRC3-205ENST00000485407 DSG3P32926 999 aa12.08□□□□□ -0.48
NHLRC3-205ENST00000485407 MYCNP04198 464 aaPredicted RBP12.07□□□□□ -0.48
NHLRC3-205ENST00000485407 SAMD1Q6SPF0 538 aaPredicted RBP12.07□□□□□ -0.48
NHLRC3-205ENST00000485407 FOXD4L1Q9NU39 408 aa12.03□□□□□ -0.48
NHLRC3-205ENST00000485407 TRHP20396 242 aaPredicted RBP12.01□□□□□ -0.49
NHLRC3-205ENST00000485407 RTN4Q9NQC3 1192 aaKnown RBP12.01□□□□□ -0.49
NHLRC3-205ENST00000485407 ZNF219Q9P2Y4 722 aaPredicted RBP12□□□□□ -0.49
NHLRC3-205ENST00000485407 AMER1Q5JTC6 1135 aaPredicted RBP11.99□□□□□ -0.49
NHLRC3-205ENST00000485407 ABCC9O60706 1549 aa11.91□□□□□ -0.5
NHLRC3-205ENST00000485407 ABCB7O75027 752 aa11.91□□□□□ -0.5
NHLRC3-205ENST00000485407 ATF5Q9Y2D1 282 aaPredicted RBP11.78□□□□□ -0.52
NHLRC3-205ENST00000485407 POLA2Q14181 598 aa11.74□□□□□ -0.53
NHLRC3-205ENST00000485407 ATXN8OSP0DMR3 200 aa11.65□□□□□ -0.54
NHLRC3-205ENST00000485407 DNAJC5Q9H3Z4 198 aa11.63□□□□□ -0.55
NHLRC3-205ENST00000485407 FKBP8Q14318 412 aa11.52□□□□□ -0.57
NHLRC3-205ENST00000485407 RBM42Q9BTD8 480 aaKnown RBP11.51□□□□□ -0.57
NHLRC3-205ENST00000485407 ZBTB12Q9Y330 459 aaPredicted RBP11.51□□□□□ -0.57
NHLRC3-205ENST00000485407 CCDC180Q9P1Z9 1646 aa11.41□□□□□ -0.58
NHLRC3-205ENST00000485407 OSCARQ8IYS5 282 aa11.37□□□□□ -0.59
NHLRC3-205ENST00000485407 POTEHQ6S545 545 aa11.3□□□□□ -0.6
NHLRC3-205ENST00000485407 FBLN2P98095 1184 aa11.29□□□□□ -0.6
NHLRC3-205ENST00000485407 AKT1S1Q96B36 256 aa11.29□□□□□ -0.6
NHLRC3-205ENST00000485407 MKRN4PQ13434 485 aaPredicted RBP11.25□□□□□ -0.61
NHLRC3-205ENST00000485407 CHRDL2Q6WN34 429 aa11.2□□□□□ -0.62
NHLRC3-205ENST00000485407 REM2Q8IYK8 340 aaPredicted RBP11.18□□□□□ -0.62
NHLRC3-205ENST00000485407 SPDYE2BA6NHP3 402 aa11.17□□□□□ -0.62
NHLRC3-205ENST00000485407 SPDYE6P0CI01 402 aa11.17□□□□□ -0.62
NHLRC3-205ENST00000485407 SPDYE2Q495Y8 402 aa11.17□□□□□ -0.62
NHLRC3-205ENST00000485407 PITPNM1O00562 1244 aa11.07□□□□□ -0.64
NHLRC3-205ENST00000485407 SSUH2Q9Y2M2 353 aa11.06□□□□□ -0.64
NHLRC3-205ENST00000485407 ZNF692Q9BU19 519 aaPredicted RBP11.05□□□□□ -0.64
NHLRC3-205ENST00000485407 PLCB2Q00722 1185 aa11.02□□□□□ -0.65
NHLRC3-205ENST00000485407 RB1CC1Q8TDY2 1594 aa11.02□□□□□ -0.65
NHLRC3-205ENST00000485407 PABPN1Q86U42 306 aaKnown RBP eCLIP10.98□□□□□ -0.65
NHLRC3-205ENST00000485407 PIP4P2Q8N4L2 257 aa10.98□□□□□ -0.65
NHLRC3-205ENST00000485407 FXR2P51116 673 aaKnown RBP eCLIP10.94□□□□□ -0.66
NHLRC3-205ENST00000485407 HAP1P54257 671 aaPredicted RBP10.94□□□□□ -0.66
NHLRC3-205ENST00000485407 SPDYE1Q8NFV5 336 aaPredicted RBP10.93□□□□□ -0.66
NHLRC3-205ENST00000485407 BCANQ96GW7 911 aa10.89□□□□□ -0.67
NHLRC3-205ENST00000485407 CLEC11AQ9Y240 323 aa10.89□□□□□ -0.67
NHLRC3-205ENST00000485407 PRKCSHP14314 528 aaPredicted RBP10.86□□□□□ -0.67
NHLRC3-205ENST00000485407 DCAF8L2P0C7V8 631 aa10.85□□□□□ -0.67
NHLRC3-205ENST00000485407 FBXO3Q9UK99 471 aa10.85□□□□□ -0.67
NHLRC3-205ENST00000485407 CECR2Q9BXF3 1484 aa10.84□□□□□ -0.67
NHLRC3-205ENST00000485407 SPDYE4A6NLX3 237 aa10.79□□□□□ -0.68
NHLRC3-205ENST00000485407 PRKAR2AP13861 404 aaKnown RBP10.77□□□□□ -0.69
NHLRC3-205ENST00000485407 TAOK2Q9UL54 1235 aa10.77□□□□□ -0.69
NHLRC3-205ENST00000485407 NACADO15069 1562 aa10.77□□□□□ -0.69
NHLRC3-205ENST00000485407 PRR29P0C7W0 189 aa10.74□□□□□ -0.69
NHLRC3-205ENST00000485407 MYO15BQ96JP2 1530 aa10.74□□□□□ -0.69
NHLRC3-205ENST00000485407 CC2D2AQ9P2K1 1620 aa10.73□□□□□ -0.69
NHLRC3-205ENST00000485407 VSIG10Q8N0Z9 540 aa10.72□□□□□ -0.69
NHLRC3-205ENST00000485407 BICRAQ9NZM4 1560 aa10.72□□□□□ -0.69
NHLRC3-205ENST00000485407 ZCCHC6Q5VYS8 1495 aaKnown RBP10.71□□□□□ -0.69
NHLRC3-205ENST00000485407 UNC13AQ9UPW8 1703 aa10.71□□□□□ -0.69
NHLRC3-205ENST00000485407 HAX1O00165 279 aa10.7□□□□□ -0.7
NHLRC3-205ENST00000485407 DCAF1Q9Y4B6 1507 aa10.68□□□□□ -0.7
NHLRC3-205ENST00000485407 CHADLQ6NUI6 762 aa10.68□□□□□ -0.7
NHLRC3-205ENST00000485407 SP7Q8TDD2 431 aaPredicted RBP10.68□□□□□ -0.7
NHLRC3-205ENST00000485407 VASPP50552 380 aaPredicted RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms