RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 NISCHQ9Y2I1 1504 aa23.86■■□□□ 1.41
VPS52-218ENST00000482399 SHROOM4Q9ULL8 1493 aa22.01■■□□□ 1.11
VPS52-218ENST00000482399 SUPT5HO00267 1087 aaKnown RBP21.92■■□□□ 1.1
VPS52-218ENST00000482399 DCAF8L2P0C7V8 631 aa21.57■■□□□ 1.04
VPS52-218ENST00000482399 PCGF6Q9BYE7 350 aa21.17■□□□□ 0.98
VPS52-218ENST00000482399 HRCP23327 699 aa20.91■□□□□ 0.94
VPS52-218ENST00000482399 PPARGC1BQ86YN6 1023 aaKnown RBP20.9■□□□□ 0.94
VPS52-218ENST00000482399 CHIC1Q5VXU3 224 aa20.81■□□□□ 0.92
VPS52-218ENST00000482399 EHMT2Q96KQ7 1210 aa20.73■□□□□ 0.91
VPS52-218ENST00000482399 LOC105371045A0A1W2PR82 267 aa20.67■□□□□ 0.9
VPS52-218ENST00000482399 MYO15BQ96JP2 1530 aa20.53■□□□□ 0.88
VPS52-218ENST00000482399 FAM9AQ8IZU1 332 aaPredicted RBP20.46■□□□□ 0.87
VPS52-218ENST00000482399 TRIM26Q12899 539 aaPredicted RBP20.19■□□□□ 0.82
VPS52-218ENST00000482399 ZCCHC6Q5VYS8 1495 aaKnown RBP20.1■□□□□ 0.81
VPS52-218ENST00000482399 TRIM41Q8WV44 630 aa20.09■□□□□ 0.81
VPS52-218ENST00000482399 TTBK1Q5TCY1 1321 aaPredicted RBP20.07■□□□□ 0.8
VPS52-218ENST00000482399 ZEB1P37275 1124 aaPredicted RBP19.86■□□□□ 0.77
VPS52-218ENST00000482399 DCAF1Q9Y4B6 1507 aa19.8■□□□□ 0.76
VPS52-218ENST00000482399 CCER1Q8TC90 406 aaPredicted RBP19.78■□□□□ 0.76
VPS52-218ENST00000482399 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.74■□□□□ 0.75
VPS52-218ENST00000482399 SCAF1Q9H7N4 1312 aaKnown RBP19.66■□□□□ 0.74
VPS52-218ENST00000482399 PELP1Q8IZL8 1130 aaKnown RBP19.59■□□□□ 0.73
VPS52-218ENST00000482399 YTHDC1Q96MU7 727 aaKnown RBP19.53■□□□□ 0.72
VPS52-218ENST00000482399 CCDC180Q9P1Z9 1646 aa19.48■□□□□ 0.71
VPS52-218ENST00000482399 CENPBP07199 599 aaPredicted RBP19.41■□□□□ 0.7
VPS52-218ENST00000482399 RANGAP1P46060 587 aaPredicted RBP19.39■□□□□ 0.69
VPS52-218ENST00000482399 DIEXFQ68CQ4 756 aaKnown RBP19.39■□□□□ 0.69
VPS52-218ENST00000482399 GTF3C3Q9Y5Q9 886 aa19.39■□□□□ 0.69
VPS52-218ENST00000482399 NEUROD1Q13562 356 aa19.37■□□□□ 0.69
VPS52-218ENST00000482399 UBTFP17480 764 aaKnown RBP19.32■□□□□ 0.68
VPS52-218ENST00000482399 ACIN1Q9UKV3 1341 aaKnown RBP19.32■□□□□ 0.68
VPS52-218ENST00000482399 RSF1Q96T23 1441 aaPredicted RBP19.28■□□□□ 0.68
VPS52-218ENST00000482399 SCRIBQ14160 1630 aa19.27■□□□□ 0.68
VPS52-218ENST00000482399 HNRNPUL2Q1KMD3 747 aaKnown RBP19.21■□□□□ 0.67
VPS52-218ENST00000482399 RB1CC1Q8TDY2 1594 aa19.08■□□□□ 0.65
VPS52-218ENST00000482399 ABCC9O60706 1549 aa19.05■□□□□ 0.64
VPS52-218ENST00000482399 APLP2Q06481 763 aa19.04■□□□□ 0.64
VPS52-218ENST00000482399 CECR2Q9BXF3 1484 aa18.97■□□□□ 0.63
VPS52-218ENST00000482399 ZNF316A6NFI3 1004 aaPredicted RBP18.96■□□□□ 0.63
VPS52-218ENST00000482399 MIER1Q8N108 512 aa18.87■□□□□ 0.61
VPS52-218ENST00000482399 CSRNP3Q8WYN3 585 aa18.81■□□□□ 0.6
VPS52-218ENST00000482399 ITGAEP38570 1179 aa18.79■□□□□ 0.6
VPS52-218ENST00000482399 MROH2BQ7Z745 1585 aa18.76■□□□□ 0.59
VPS52-218ENST00000482399 PABPN1Q86U42 306 aaKnown RBP eCLIP18.75■□□□□ 0.59
VPS52-218ENST00000482399 CEP162Q5TB80 1403 aa18.73■□□□□ 0.59
VPS52-218ENST00000482399 SOGA1O94964 1423 aa18.68■□□□□ 0.58
VPS52-218ENST00000482399 MYT1Q01538 1121 aa18.67■□□□□ 0.58
VPS52-218ENST00000482399 ABCC8Q09428 1581 aa18.65■□□□□ 0.58
VPS52-218ENST00000482399 CCDC88BA6NC98 1476 aa18.64■□□□□ 0.57
VPS52-218ENST00000482399 WIZO95785 1651 aa18.62■□□□□ 0.57
VPS52-218ENST00000482399 BCANQ96GW7 911 aa18.6■□□□□ 0.57
VPS52-218ENST00000482399 ATP1B4Q9UN42 357 aaPredicted RBP18.54■□□□□ 0.56
VPS52-218ENST00000482399 RUSC2Q8N2Y8 1516 aa18.51■□□□□ 0.55
VPS52-218ENST00000482399 TNIKQ9UKE5 1360 aa18.49■□□□□ 0.55
VPS52-218ENST00000482399 CLIP1P30622 1438 aa18.4■□□□□ 0.54
VPS52-218ENST00000482399 GOLGA3Q08378 1498 aa18.34■□□□□ 0.53
VPS52-218ENST00000482399 WRNQ14191 1432 aaPredicted RBP eCLIP18.33■□□□□ 0.52
VPS52-218ENST00000482399 HIRIP3Q9BW71 556 aaPredicted RBP18.32■□□□□ 0.52
VPS52-218ENST00000482399 SUPT16HQ9Y5B9 1047 aaKnown RBP18.31■□□□□ 0.52
VPS52-218ENST00000482399 NACADO15069 1562 aa18.3■□□□□ 0.52
VPS52-218ENST00000482399 BAZ1AQ9NRL2 1556 aaPredicted RBP18.29■□□□□ 0.52
VPS52-218ENST00000482399 NEFLP07196 543 aa18.28■□□□□ 0.52
VPS52-218ENST00000482399 DDX10Q13206 875 aaKnown RBP18.26■□□□□ 0.51
VPS52-218ENST00000482399 FAM50AQ14320 339 aaKnown RBP18.26■□□□□ 0.51
VPS52-218ENST00000482399 KCNH8Q96L42 1107 aa18.25■□□□□ 0.51
VPS52-218ENST00000482399 FKBP8Q14318 412 aa18.24■□□□□ 0.51
VPS52-218ENST00000482399 KANK4Q5T7N3 995 aaPredicted RBP18.22■□□□□ 0.51
VPS52-218ENST00000482399 EEA1Q15075 1411 aa18.21■□□□□ 0.51
VPS52-218ENST00000482399 P3H3Q8IVL6 736 aa18.2■□□□□ 0.5
VPS52-218ENST00000482399 TRIM52Q96A61 297 aa18.2■□□□□ 0.5
VPS52-218ENST00000482399 CEP164Q9UPV0 1460 aa18.15■□□□□ 0.5
VPS52-218ENST00000482399 CNGB1Q14028 1251 aaPredicted RBP18.13■□□□□ 0.49
VPS52-218ENST00000482399 VPS8Q8N3P4 1428 aa18.13■□□□□ 0.49
VPS52-218ENST00000482399 TOP2AP11388 1531 aaKnown RBP18.12■□□□□ 0.49
VPS52-218ENST00000482399 TSHZ2Q9NRE2 1034 aa18.1■□□□□ 0.49
VPS52-218ENST00000482399 SIN3AQ96ST3 1273 aa18.09■□□□□ 0.49
VPS52-218ENST00000482399 RAPGEF2Q9Y4G8 1499 aa18.09■□□□□ 0.49
VPS52-218ENST00000482399 SMARCA2P51531 1590 aa18.07■□□□□ 0.48
VPS52-218ENST00000482399 ERICH6Q7L0X2 663 aa18.06■□□□□ 0.48
VPS52-218ENST00000482399 DHX57Q6P158 1386 aaKnown RBP18.04■□□□□ 0.48
VPS52-218ENST00000482399 IRX6P78412 446 aaPredicted RBP18.04■□□□□ 0.48
VPS52-218ENST00000482399 ANP32CO43423 234 aa18■□□□□ 0.47
VPS52-218ENST00000482399 SMARCA4P51532 1647 aa17.99■□□□□ 0.47
VPS52-218ENST00000482399 ANP32EQ9BTT0 268 aa17.99■□□□□ 0.47
VPS52-218ENST00000482399 CLSPNQ9HAW4 1339 aa17.96■□□□□ 0.46
VPS52-218ENST00000482399 CCNB3Q8WWL7 1395 aa17.9■□□□□ 0.46
VPS52-218ENST00000482399 POLR3GLQ9BT43 218 aa17.88■□□□□ 0.45
VPS52-218ENST00000482399 HNRNPUQ00839 825 aaKnown RBP eCLIP17.88■□□□□ 0.45
VPS52-218ENST00000482399 EIF4G1Q04637 1599 aaKnown RBP17.88■□□□□ 0.45
VPS52-218ENST00000482399 BAZ1BQ9UIG0 1483 aaKnown RBP17.86■□□□□ 0.45
VPS52-218ENST00000482399 SYNJ1O43426 1573 aa17.85■□□□□ 0.45
VPS52-218ENST00000482399 RAB3GAP2Q9H2M9 1393 aa17.85■□□□□ 0.45
VPS52-218ENST00000482399 KIF21BO75037 1637 aa17.84■□□□□ 0.45
VPS52-218ENST00000482399 RBM19Q9Y4C8 960 aaKnown RBP17.82■□□□□ 0.44
VPS52-218ENST00000482399 SENP3-EIF4A1A0A087X0R7 540 aa17.82■□□□□ 0.44
VPS52-218ENST00000482399 ARID3CA6NKF2 412 aa17.81■□□□□ 0.44
VPS52-218ENST00000482399 BCL11AQ9H165 835 aa17.77■□□□□ 0.44
VPS52-218ENST00000482399 CDK11AQ9UQ88 783 aaPredicted RBP17.77■□□□□ 0.43
VPS52-218ENST00000482399 TONSLQ96HA7 1378 aa17.76■□□□□ 0.43
VPS52-218ENST00000482399 CHIC2Q9UKJ5 165 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms