RNA–Protein interactions for RNA: ENST00000481639.1

PHC3-208, Transcript of polyhomeotic homolog 3, humanhuman

TSL 1 (best) BASIC

Gene PHC3, Length 1,075 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-208ENST00000481639 AEBP2Q6ZN18 517 aaPredicted RBP27.44■■□□□ 1.98
PHC3-208ENST00000481639 CHIC1Q5VXU3 224 aa26.34■■□□□ 1.81
PHC3-208ENST00000481639 SENP3Q9H4L4 574 aaPredicted RBP23.35■■□□□ 1.33
PHC3-208ENST00000481639 PHF23Q9BUL5 403 aaPredicted RBP23.12■■□□□ 1.29
PHC3-208ENST00000481639 FOXD1Q16676 465 aa21.74■■□□□ 1.07
PHC3-208ENST00000481639 PLPPR3Q6T4P5 718 aa21.17■□□□□ 0.98
PHC3-208ENST00000481639 PPP6R1Q9UPN7 881 aa20.56■□□□□ 0.88
PHC3-208ENST00000481639 ADRA2BP18089 450 aa20.5■□□□□ 0.87
PHC3-208ENST00000481639 PIAS4Q8N2W9 510 aaPredicted RBP20.37■□□□□ 0.85
PHC3-208ENST00000481639 MSH5O43196 834 aa20.23■□□□□ 0.83
PHC3-208ENST00000481639 POTEDQ86YR6 584 aa19.25■□□□□ 0.67
PHC3-208ENST00000481639 SCAF1Q9H7N4 1312 aaKnown RBP18.75■□□□□ 0.59
PHC3-208ENST00000481639 MAPK8IP2Q13387 824 aaPredicted RBP18.74■□□□□ 0.59
PHC3-208ENST00000481639 PPP4R3CPQ6ZMV5 832 aa18.6■□□□□ 0.57
PHC3-208ENST00000481639 DMRT2Q9Y5R5 561 aa18.58■□□□□ 0.56
PHC3-208ENST00000481639 CNKSR2Q8WXI2 1034 aa18.19■□□□□ 0.5
PHC3-208ENST00000481639 HOXD11P31277 338 aaPredicted RBP18.01■□□□□ 0.47
PHC3-208ENST00000481639 NCBP3Q53F19 620 aaKnown RBP17.96■□□□□ 0.47
PHC3-208ENST00000481639 RNF216Q9NWF9 866 aaPredicted RBP17.95■□□□□ 0.46
PHC3-208ENST00000481639 DCAF8L1A6NGE4 600 aa17.76■□□□□ 0.43
PHC3-208ENST00000481639 NPM3O75607 178 aaKnown RBP17.72■□□□□ 0.43
PHC3-208ENST00000481639 KCNA4P22459 653 aa17.63■□□□□ 0.41
PHC3-208ENST00000481639 DNAJC5BQ9UF47 199 aa17.35■□□□□ 0.37
PHC3-208ENST00000481639 RNF39Q9H2S5 420 aa17.29■□□□□ 0.36
PHC3-208ENST00000481639 CACNB1Q02641 598 aaPredicted RBP17.16■□□□□ 0.34
PHC3-208ENST00000481639 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.14■□□□□ 0.334e-8■■□□□ 12.6
PHC3-208ENST00000481639 C1QBPQ07021 282 aaKnown RBP17.06■□□□□ 0.32
PHC3-208ENST00000481639 SLC4A2P04920 1241 aa16.85■□□□□ 0.29
PHC3-208ENST00000481639 U3KPZ7 1027 aaPredicted RBP16.82■□□□□ 0.28
PHC3-208ENST00000481639 SLC4A1APQ9BWU0 796 aaKnown RBP16.69■□□□□ 0.26
PHC3-208ENST00000481639 SPINK5Q9NQ38 1064 aaPredicted RBP16.49■□□□□ 0.23
PHC3-208ENST00000481639 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.44■□□□□ 0.22
PHC3-208ENST00000481639 HNRNPUL2Q1KMD3 747 aaKnown RBP16.44■□□□□ 0.22
PHC3-208ENST00000481639 CAPN15O75808 1086 aa16.43■□□□□ 0.22
PHC3-208ENST00000481639 MYCNP04198 464 aaPredicted RBP16.38■□□□□ 0.21
PHC3-208ENST00000481639 APLP2Q06481 763 aa16.38■□□□□ 0.21
PHC3-208ENST00000481639 SAMD1Q6SPF0 538 aaPredicted RBP16.36■□□□□ 0.21
PHC3-208ENST00000481639 FOXD4L1Q9NU39 408 aa16.36■□□□□ 0.21
PHC3-208ENST00000481639 DSG3P32926 999 aa16.29■□□□□ 0.2
PHC3-208ENST00000481639 TRHP20396 242 aaPredicted RBP16.24■□□□□ 0.19
PHC3-208ENST00000481639 ZBTB22O15209 634 aa16.23■□□□□ 0.19
PHC3-208ENST00000481639 ZNF219Q9P2Y4 722 aaPredicted RBP16.23■□□□□ 0.19
PHC3-208ENST00000481639 ABCB7O75027 752 aa16.09■□□□□ 0.17
PHC3-208ENST00000481639 ATF5Q9Y2D1 282 aaPredicted RBP15.99■□□□□ 0.15
PHC3-208ENST00000481639 POLA2Q14181 598 aa15.89■□□□□ 0.13
PHC3-208ENST00000481639 ATXN8OSP0DMR3 200 aa15.85■□□□□ 0.13
PHC3-208ENST00000481639 CSRNP3Q8WYN3 585 aa15.74■□□□□ 0.11
PHC3-208ENST00000481639 EHMT2Q96KQ7 1210 aa15.66■□□□□ 0.1
PHC3-208ENST00000481639 ZBTB12Q9Y330 459 aaPredicted RBP15.58■□□□□ 0.08
PHC3-208ENST00000481639 RBM42Q9BTD8 480 aaKnown RBP15.52■□□□□ 0.08
PHC3-208ENST00000481639 OSCARQ8IYS5 282 aa15.36■□□□□ 0.05
PHC3-208ENST00000481639 FBLN2P98095 1184 aa15.32■□□□□ 0.04
PHC3-208ENST00000481639 MKRN4PQ13434 485 aaPredicted RBP15.27■□□□□ 0.04
PHC3-208ENST00000481639 AKT1S1Q96B36 256 aa15.24■□□□□ 0.03
PHC3-208ENST00000481639 POTEHQ6S545 545 aa15.14■□□□□ 0.01
PHC3-208ENST00000481639 SPDYE2BA6NHP3 402 aa15.13■□□□□ 0.01
PHC3-208ENST00000481639 SPDYE6P0CI01 402 aa15.13■□□□□ 0.01
PHC3-208ENST00000481639 SPDYE2Q495Y8 402 aa15.13■□□□□ 0.01
PHC3-208ENST00000481639 REM2Q8IYK8 340 aaPredicted RBP15.09■□□□□ 0.01
PHC3-208ENST00000481639 CHRDL2Q6WN34 429 aa15.07■□□□□ 0
PHC3-208ENST00000481639 ZNF692Q9BU19 519 aaPredicted RBP14.99□□□□□ -0.01
PHC3-208ENST00000481639 SSUH2Q9Y2M2 353 aa14.97□□□□□ -0.01
PHC3-208ENST00000481639 PITPNM1O00562 1244 aa14.93□□□□□ -0.02
PHC3-208ENST00000481639 PIP4P2Q8N4L2 257 aa14.79□□□□□ -0.04
PHC3-208ENST00000481639 SPDYE1Q8NFV5 336 aaPredicted RBP14.79□□□□□ -0.04
PHC3-208ENST00000481639 PABPN1Q86U42 306 aaKnown RBP eCLIP14.78□□□□□ -0.04
PHC3-208ENST00000481639 FXR2P51116 673 aaKnown RBP eCLIP14.75□□□□□ -0.05
PHC3-208ENST00000481639 CLEC11AQ9Y240 323 aa14.74□□□□□ -0.05
PHC3-208ENST00000481639 SPDYE4A6NLX3 237 aa14.68□□□□□ -0.06
PHC3-208ENST00000481639 PRR29P0C7W0 189 aa14.55□□□□□ -0.08
PHC3-208ENST00000481639 PRKAR2AP13861 404 aaKnown RBP14.54□□□□□ -0.08
PHC3-208ENST00000481639 CHADLQ6NUI6 762 aa14.44□□□□□ -0.1
PHC3-208ENST00000481639 STAG3Q9UJ98 1225 aa14.44□□□□□ -0.1
PHC3-208ENST00000481639 HAX1O00165 279 aa14.42□□□□□ -0.1
PHC3-208ENST00000481639 PROM2Q8N271 834 aa14.4□□□□□ -0.1
PHC3-208ENST00000481639 SP7Q8TDD2 431 aaPredicted RBP14.33□□□□□ -0.12
PHC3-208ENST00000481639 EVX2Q03828 476 aa14.29□□□□□ -0.12
PHC3-208ENST00000481639 C19orf67A6NJJ6 358 aa14.27□□□□□ -0.13
PHC3-208ENST00000481639 CREBZFQ9NS37 354 aa14.27□□□□□ -0.13
PHC3-208ENST00000481639 FARP1Q9Y4F1 1045 aaPredicted RBP14.26□□□□□ -0.13
PHC3-208ENST00000481639 FKBP8Q14318 412 aa14.23□□□□□ -0.13
PHC3-208ENST00000481639 CD44P16070 742 aaKnown RBP14.1□□□□□ -0.15
PHC3-208ENST00000481639 MNX1P50219 401 aaPredicted RBP14.07□□□□□ -0.16
PHC3-208ENST00000481639 NPM1P06748 294 aaKnown RBP eCLIP14.01□□□□□ -0.17
PHC3-208ENST00000481639 GABBR2O75899 941 aa13.98□□□□□ -0.17
PHC3-208ENST00000481639 MIER1Q8N108 512 aa13.97□□□□□ -0.17
PHC3-208ENST00000481639 ZRANB1Q9UGI0 708 aa13.94□□□□□ -0.18
PHC3-208ENST00000481639 PLEKHG5O94827 1062 aa13.92□□□□□ -0.18
PHC3-208ENST00000481639 ZNF579Q8NAF0 562 aaKnown RBP13.9□□□□□ -0.18
PHC3-208ENST00000481639 PLCD3Q8N3E9 789 aa13.89□□□□□ -0.19
PHC3-208ENST00000481639 PAK3O75914 559 aaPredicted RBP13.88□□□□□ -0.19
PHC3-208ENST00000481639 CLCN6P51797 869 aa13.87□□□□□ -0.19
PHC3-208ENST00000481639 FBXO3Q9UK99 471 aa13.87□□□□□ -0.19
PHC3-208ENST00000481639 PHF12Q96QT6 1004 aa13.77□□□□□ -0.21
PHC3-208ENST00000481639 ZBTB47Q9UFB7 747 aaPredicted RBP13.77□□□□□ -0.21
PHC3-208ENST00000481639 TSPYL2Q9H2G4 693 aaPredicted RBP13.75□□□□□ -0.21
PHC3-208ENST00000481639 RASEFQ8IZ41 740 aa13.72□□□□□ -0.21
PHC3-208ENST00000481639 GALR2O43603 387 aaPredicted RBP13.7□□□□□ -0.22
PHC3-208ENST00000481639 CCDC61Q9Y6R9 512 aa13.7□□□□□ -0.22
PHC3-208ENST00000481639 POTEIP0CG38 1075 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms