RNA–Protein interactions for RNA: ENST00000480102.1

PTCD3-213, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-213ENST00000480102 AEBP2Q6ZN18 517 aaPredicted RBP18.06■□□□□ 0.48
PTCD3-213ENST00000480102 CHIC1Q5VXU3 224 aa17.48■□□□□ 0.39
PTCD3-213ENST00000480102 SENP3Q9H4L4 574 aaPredicted RBP15.36■□□□□ 0.05
PTCD3-213ENST00000480102 PHF23Q9BUL5 403 aaPredicted RBP15.35■□□□□ 0.05
PTCD3-213ENST00000480102 FOXD1Q16676 465 aa14.26□□□□□ -0.13
PTCD3-213ENST00000480102 PLPPR3Q6T4P5 718 aa14.13□□□□□ -0.15
PTCD3-213ENST00000480102 PPP6R1Q9UPN7 881 aa13.59□□□□□ -0.23
PTCD3-213ENST00000480102 ADRA2BP18089 450 aa13.55□□□□□ -0.24
PTCD3-213ENST00000480102 PIAS4Q8N2W9 510 aaPredicted RBP13.41□□□□□ -0.26
PTCD3-213ENST00000480102 POTEDQ86YR6 584 aa13.25□□□□□ -0.29
PTCD3-213ENST00000480102 MSH5O43196 834 aa13.24□□□□□ -0.29
PTCD3-213ENST00000480102 SCAF1Q9H7N4 1312 aaKnown RBP12.41□□□□□ -0.42
PTCD3-213ENST00000480102 PPP4R3CPQ6ZMV5 832 aa12.41□□□□□ -0.42
PTCD3-213ENST00000480102 MAPK8IP2Q13387 824 aaPredicted RBP12.34□□□□□ -0.43
PTCD3-213ENST00000480102 DMRT2Q9Y5R5 561 aa12.23□□□□□ -0.45
PTCD3-213ENST00000480102 CNKSR2Q8WXI2 1034 aa12.11□□□□□ -0.47
PTCD3-213ENST00000480102 NCBP3Q53F19 620 aaKnown RBP12.04□□□□□ -0.48
PTCD3-213ENST00000480102 NISCHQ9Y2I1 1504 aa11.94□□□□□ -0.5
PTCD3-213ENST00000480102 KCNA4P22459 653 aa11.93□□□□□ -0.5
PTCD3-213ENST00000480102 HOXD11P31277 338 aaPredicted RBP11.92□□□□□ -0.5
PTCD3-213ENST00000480102 RNF216Q9NWF9 866 aaPredicted RBP11.92□□□□□ -0.5
PTCD3-213ENST00000480102 NPM3O75607 178 aaKnown RBP11.87□□□□□ -0.51
PTCD3-213ENST00000480102 DCAF8L1A6NGE4 600 aa11.68□□□□□ -0.54
PTCD3-213ENST00000480102 DNAJC5BQ9UF47 199 aa11.58□□□□□ -0.56
PTCD3-213ENST00000480102 CACNB1Q02641 598 aaPredicted RBP11.33□□□□□ -0.6
PTCD3-213ENST00000480102 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.33□□□□□ -0.64e-8■□□□□ 11
PTCD3-213ENST00000480102 SLC4A1APQ9BWU0 796 aaKnown RBP11.33□□□□□ -0.6
PTCD3-213ENST00000480102 RNF39Q9H2S5 420 aa11.32□□□□□ -0.6
PTCD3-213ENST00000480102 SLC4A2P04920 1241 aa11.24□□□□□ -0.61
PTCD3-213ENST00000480102 C1QBPQ07021 282 aaKnown RBP11.18□□□□□ -0.62
PTCD3-213ENST00000480102 U3KPZ7 1027 aaPredicted RBP11.15□□□□□ -0.62
PTCD3-213ENST00000480102 FOXD4L1Q9NU39 408 aa11.05□□□□□ -0.64
PTCD3-213ENST00000480102 ZBTB22O15209 634 aa10.99□□□□□ -0.65
PTCD3-213ENST00000480102 MYCNP04198 464 aaPredicted RBP10.98□□□□□ -0.65
PTCD3-213ENST00000480102 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.96□□□□□ -0.65
PTCD3-213ENST00000480102 HNRNPUL2Q1KMD3 747 aaKnown RBP10.96□□□□□ -0.65
PTCD3-213ENST00000480102 SAMD1Q6SPF0 538 aaPredicted RBP10.91□□□□□ -0.66
PTCD3-213ENST00000480102 APLP2Q06481 763 aa10.88□□□□□ -0.67
PTCD3-213ENST00000480102 SPINK5Q9NQ38 1064 aaPredicted RBP10.88□□□□□ -0.67
PTCD3-213ENST00000480102 CAPN15O75808 1086 aa10.84□□□□□ -0.67
PTCD3-213ENST00000480102 EHMT2Q96KQ7 1210 aa10.82□□□□□ -0.68
PTCD3-213ENST00000480102 CSRNP3Q8WYN3 585 aa10.78□□□□□ -0.68
PTCD3-213ENST00000480102 ZNF219Q9P2Y4 722 aaPredicted RBP10.77□□□□□ -0.69
PTCD3-213ENST00000480102 TRHP20396 242 aaPredicted RBP10.74□□□□□ -0.69
PTCD3-213ENST00000480102 DSG3P32926 999 aa10.71□□□□□ -0.69
PTCD3-213ENST00000480102 ATXN8OSP0DMR3 200 aa10.68□□□□□ -0.7
PTCD3-213ENST00000480102 ATF5Q9Y2D1 282 aaPredicted RBP10.68□□□□□ -0.7
PTCD3-213ENST00000480102 ABCB7O75027 752 aa10.61□□□□□ -0.71
PTCD3-213ENST00000480102 CCDC180Q9P1Z9 1646 aa10.58□□□□□ -0.72
PTCD3-213ENST00000480102 POLA2Q14181 598 aa10.53□□□□□ -0.72
PTCD3-213ENST00000480102 ZBTB12Q9Y330 459 aaPredicted RBP10.37□□□□□ -0.75
PTCD3-213ENST00000480102 POTEHQ6S545 545 aa10.32□□□□□ -0.76
PTCD3-213ENST00000480102 ABCC9O60706 1549 aa10.27□□□□□ -0.77
PTCD3-213ENST00000480102 FBLN2P98095 1184 aa10.25□□□□□ -0.77
PTCD3-213ENST00000480102 MKRN4PQ13434 485 aaPredicted RBP10.22□□□□□ -0.77
PTCD3-213ENST00000480102 RBM42Q9BTD8 480 aaKnown RBP10.22□□□□□ -0.77
PTCD3-213ENST00000480102 OSCARQ8IYS5 282 aa10.21□□□□□ -0.77
PTCD3-213ENST00000480102 MYO15BQ96JP2 1530 aa10.12□□□□□ -0.79
PTCD3-213ENST00000480102 SPDYE2BA6NHP3 402 aa10.07□□□□□ -0.8
PTCD3-213ENST00000480102 SPDYE6P0CI01 402 aa10.07□□□□□ -0.8
PTCD3-213ENST00000480102 SPDYE2Q495Y8 402 aa10.07□□□□□ -0.8
PTCD3-213ENST00000480102 AKT1S1Q96B36 256 aa10.05□□□□□ -0.8
PTCD3-213ENST00000480102 NACADO15069 1562 aa10.03□□□□□ -0.8
PTCD3-213ENST00000480102 DCAF1Q9Y4B6 1507 aa10.02□□□□□ -0.81
PTCD3-213ENST00000480102 ZNF692Q9BU19 519 aaPredicted RBP9.99□□□□□ -0.81
PTCD3-213ENST00000480102 RB1CC1Q8TDY2 1594 aa9.98□□□□□ -0.81
PTCD3-213ENST00000480102 SSUH2Q9Y2M2 353 aa9.98□□□□□ -0.81
PTCD3-213ENST00000480102 ZCCHC6Q5VYS8 1495 aaKnown RBP9.96□□□□□ -0.82
PTCD3-213ENST00000480102 REM2Q8IYK8 340 aaPredicted RBP9.94□□□□□ -0.82
PTCD3-213ENST00000480102 SPDYE4A6NLX3 237 aa9.9□□□□□ -0.82
PTCD3-213ENST00000480102 PABPN1Q86U42 306 aaKnown RBP eCLIP9.86□□□□□ -0.83
PTCD3-213ENST00000480102 CHRDL2Q6WN34 429 aa9.85□□□□□ -0.83
PTCD3-213ENST00000480102 PITPNM1O00562 1244 aa9.84□□□□□ -0.83
PTCD3-213ENST00000480102 SPDYE1Q8NFV5 336 aaPredicted RBP9.81□□□□□ -0.84
PTCD3-213ENST00000480102 SHROOM4Q9ULL8 1493 aa9.79□□□□□ -0.84
PTCD3-213ENST00000480102 DCAF8L2P0C7V8 631 aa9.76□□□□□ -0.85
PTCD3-213ENST00000480102 CLEC11AQ9Y240 323 aa9.76□□□□□ -0.85
PTCD3-213ENST00000480102 FKBP8Q14318 412 aa9.75□□□□□ -0.85
PTCD3-213ENST00000480102 PROM2Q8N271 834 aa9.74□□□□□ -0.85
PTCD3-213ENST00000480102 FXR2P51116 673 aaKnown RBP eCLIP9.69□□□□□ -0.86
PTCD3-213ENST00000480102 PIP4P2Q8N4L2 257 aa9.69□□□□□ -0.86
PTCD3-213ENST00000480102 STAG3Q9UJ98 1225 aa9.67□□□□□ -0.86
PTCD3-213ENST00000480102 PRR29P0C7W0 189 aa9.66□□□□□ -0.86
PTCD3-213ENST00000480102 BICRAQ9NZM4 1560 aa9.64□□□□□ -0.87
PTCD3-213ENST00000480102 PRKAR2AP13861 404 aaKnown RBP9.58□□□□□ -0.88
PTCD3-213ENST00000480102 CHADLQ6NUI6 762 aa9.54□□□□□ -0.88
PTCD3-213ENST00000480102 UNC13AQ9UPW8 1703 aa9.51□□□□□ -0.89
PTCD3-213ENST00000480102 CREBZFQ9NS37 354 aa9.5□□□□□ -0.89
PTCD3-213ENST00000480102 SCRIBQ14160 1630 aa9.49□□□□□ -0.89
PTCD3-213ENST00000480102 SP7Q8TDD2 431 aaPredicted RBP9.48□□□□□ -0.89
PTCD3-213ENST00000480102 FBXO3Q9UK99 471 aa9.46□□□□□ -0.9
PTCD3-213ENST00000480102 FARP1Q9Y4F1 1045 aaPredicted RBP9.44□□□□□ -0.9
PTCD3-213ENST00000480102 EIF4G1Q04637 1599 aaKnown RBP9.41□□□□□ -0.9
PTCD3-213ENST00000480102 HAX1O00165 279 aa9.4□□□□□ -0.9
PTCD3-213ENST00000480102 MNX1P50219 401 aaPredicted RBP9.39□□□□□ -0.91
PTCD3-213ENST00000480102 MIER1Q8N108 512 aa9.39□□□□□ -0.91
PTCD3-213ENST00000480102 PLEKHG5O94827 1062 aa9.38□□□□□ -0.91
PTCD3-213ENST00000480102 C19orf67A6NJJ6 358 aa9.37□□□□□ -0.91
PTCD3-213ENST00000480102 PLCD3Q8N3E9 789 aa9.36□□□□□ -0.91
PTCD3-213ENST00000480102 NPM1P06748 294 aaKnown RBP eCLIP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms