RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 NISCHQ9Y2I1 1504 aa28.23■■■□□ 2.11
SEC13-216ENST00000479868 CCDC180Q9P1Z9 1646 aa24.28■■□□□ 1.48
SEC13-216ENST00000479868 ZCCHC6Q5VYS8 1495 aaKnown RBP23.82■■□□□ 1.4
SEC13-216ENST00000479868 SHROOM4Q9ULL8 1493 aa23.6■■□□□ 1.37
SEC13-216ENST00000479868 DCAF8L2P0C7V8 631 aa23.33■■□□□ 1.33
SEC13-216ENST00000479868 DCAF1Q9Y4B6 1507 aa23.23■■□□□ 1.31
SEC13-216ENST00000479868 SUPT5HO00267 1087 aaKnown RBP22.94■■□□□ 1.26
SEC13-216ENST00000479868 MYO15BQ96JP2 1530 aa22.73■■□□□ 1.23
SEC13-216ENST00000479868 ABCC9O60706 1549 aa22.69■■□□□ 1.22
SEC13-216ENST00000479868 SCRIBQ14160 1630 aa22.57■■□□□ 1.2
SEC13-216ENST00000479868 NACADO15069 1562 aa22.5■■□□□ 1.19
SEC13-216ENST00000479868 RB1CC1Q8TDY2 1594 aa22.21■■□□□ 1.15
SEC13-216ENST00000479868 CHIC1Q5VXU3 224 aa22.17■■□□□ 1.14
SEC13-216ENST00000479868 RSF1Q96T23 1441 aaPredicted RBP22.14■■□□□ 1.14
SEC13-216ENST00000479868 CECR2Q9BXF3 1484 aa22■■□□□ 1.11
SEC13-216ENST00000479868 UNC13AQ9UPW8 1703 aa21.9■■□□□ 1.1
SEC13-216ENST00000479868 MROH2BQ7Z745 1585 aa21.9■■□□□ 1.1
SEC13-216ENST00000479868 WIZO95785 1651 aa21.77■■□□□ 1.08
SEC13-216ENST00000479868 BAZ1AQ9NRL2 1556 aaPredicted RBP21.73■■□□□ 1.07
SEC13-216ENST00000479868 BICRAQ9NZM4 1560 aa21.63■■□□□ 1.05
SEC13-216ENST00000479868 SMARCA4P51532 1647 aa21.6■■□□□ 1.05
SEC13-216ENST00000479868 PABPN1Q86U42 306 aaKnown RBP eCLIP21.56■■□□□ 1.04
SEC13-216ENST00000479868 TOP2AP11388 1531 aaKnown RBP21.45■■□□□ 1.02
SEC13-216ENST00000479868 TRIM41Q8WV44 630 aa21.44■■□□□ 1.02
SEC13-216ENST00000479868 LOC105371045A0A1W2PR82 267 aa21.44■■□□□ 1.02
SEC13-216ENST00000479868 EIF4G1Q04637 1599 aaKnown RBP21.34■■□□□ 1.01
SEC13-216ENST00000479868 SMARCA2P51531 1590 aa21.31■■□□□ 1
SEC13-216ENST00000479868 CCDC88BA6NC98 1476 aa21.3■■□□□ 1
SEC13-216ENST00000479868 PEG3Q9GZU2 1588 aa21.25■□□□□ 0.99
SEC13-216ENST00000479868 FAM9AQ8IZU1 332 aaPredicted RBP21.18■□□□□ 0.98
SEC13-216ENST00000479868 ATAD2BQ9ULI0 1458 aa21.12■□□□□ 0.97
SEC13-216ENST00000479868 ABCC8Q09428 1581 aa21.1■□□□□ 0.97
SEC13-216ENST00000479868 BAZ1BQ9UIG0 1483 aaKnown RBP21.03■□□□□ 0.96
SEC13-216ENST00000479868 PCGF6Q9BYE7 350 aa20.99■□□□□ 0.95
SEC13-216ENST00000479868 EHMT2Q96KQ7 1210 aa20.96■□□□□ 0.95
SEC13-216ENST00000479868 WRNQ14191 1432 aaPredicted RBP eCLIP20.81■□□□□ 0.92
SEC13-216ENST00000479868 NCAPD3P42695 1498 aa20.8■□□□□ 0.92
SEC13-216ENST00000479868 HMGXB3Q12766 1538 aa20.8■□□□□ 0.92
SEC13-216ENST00000479868 SOGA1O94964 1423 aa20.8■□□□□ 0.92
SEC13-216ENST00000479868 SYNJ1O43426 1573 aa20.74■□□□□ 0.91
SEC13-216ENST00000479868 TRIM26Q12899 539 aaPredicted RBP20.74■□□□□ 0.91
SEC13-216ENST00000479868 HRCP23327 699 aa20.73■□□□□ 0.91
SEC13-216ENST00000479868 RUSC2Q8N2Y8 1516 aa20.72■□□□□ 0.91
SEC13-216ENST00000479868 EEA1Q15075 1411 aa20.68■□□□□ 0.9
SEC13-216ENST00000479868 CSRNP3Q8WYN3 585 aa20.63■□□□□ 0.89
SEC13-216ENST00000479868 TOP2BQ02880 1626 aa20.56■□□□□ 0.88
SEC13-216ENST00000479868 TNIKQ9UKE5 1360 aa20.53■□□□□ 0.88
SEC13-216ENST00000479868 CFTRP13569 1480 aa20.52■□□□□ 0.87
SEC13-216ENST00000479868 CEP162Q5TB80 1403 aa20.52■□□□□ 0.87
SEC13-216ENST00000479868 BIVM-ERCC5R4GMW8 1640 aa20.51■□□□□ 0.87
SEC13-216ENST00000479868 GOLGA3Q08378 1498 aa20.5■□□□□ 0.87
SEC13-216ENST00000479868 CC2D2AQ9P2K1 1620 aa20.5■□□□□ 0.87
SEC13-216ENST00000479868 UBTFP17480 764 aaKnown RBP20.46■□□□□ 0.87
SEC13-216ENST00000479868 PPARGC1BQ86YN6 1023 aaKnown RBP20.44■□□□□ 0.86
SEC13-216ENST00000479868 KIF21BO75037 1637 aa20.44■□□□□ 0.86
SEC13-216ENST00000479868 CEP164Q9UPV0 1460 aa20.44■□□□□ 0.86
SEC13-216ENST00000479868 CUX1P39880 1505 aa20.43■□□□□ 0.86
SEC13-216ENST00000479868 PRDM2Q13029 1718 aa20.4■□□□□ 0.86
SEC13-216ENST00000479868 CADPSQ9ULU8 1353 aa20.35■□□□□ 0.85
SEC13-216ENST00000479868 RAPGEF2Q9Y4G8 1499 aa20.33■□□□□ 0.85
SEC13-216ENST00000479868 CLIP1P30622 1438 aa20.23■□□□□ 0.83
SEC13-216ENST00000479868 PRXQ9BXM0 1461 aa20.21■□□□□ 0.83
SEC13-216ENST00000479868 KIF27Q86VH2 1401 aa20.2■□□□□ 0.82
SEC13-216ENST00000479868 ERICH3Q5RHP9 1530 aa20.19■□□□□ 0.82
SEC13-216ENST00000479868 TTBK1Q5TCY1 1321 aaPredicted RBP20.19■□□□□ 0.82
SEC13-216ENST00000479868 FANCD2Q9BXW9 1451 aa20.14■□□□□ 0.82
SEC13-216ENST00000479868 NESP48681 1621 aa20.11■□□□□ 0.81
SEC13-216ENST00000479868 FGD5Q6ZNL6 1462 aa20.11■□□□□ 0.81
SEC13-216ENST00000479868 RANGAP1P46060 587 aaPredicted RBP20.11■□□□□ 0.81
SEC13-216ENST00000479868 VPS8Q8N3P4 1428 aa20.1■□□□□ 0.81
SEC13-216ENST00000479868 CUX2O14529 1486 aa20.09■□□□□ 0.81
SEC13-216ENST00000479868 ZEB1P37275 1124 aaPredicted RBP20.09■□□□□ 0.81
SEC13-216ENST00000479868 DNMBPQ6XZF7 1577 aa20.02■□□□□ 0.79
SEC13-216ENST00000479868 IGF1RP08069 1367 aa20.02■□□□□ 0.79
SEC13-216ENST00000479868 DNAJC5BQ9UF47 199 aa20■□□□□ 0.79
SEC13-216ENST00000479868 LAMC3Q9Y6N6 1575 aa20■□□□□ 0.79
SEC13-216ENST00000479868 TOPBP1Q92547 1522 aa19.98■□□□□ 0.79
SEC13-216ENST00000479868 ARAP1Q96P48 1450 aa19.98■□□□□ 0.79
SEC13-216ENST00000479868 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.96■□□□□ 0.79
SEC13-216ENST00000479868 POLA1P09884 1462 aaPredicted RBP19.94■□□□□ 0.78
SEC13-216ENST00000479868 RAD54L2Q9Y4B4 1467 aa19.94■□□□□ 0.78
SEC13-216ENST00000479868 CARMIL1Q5VZK9 1371 aa19.92■□□□□ 0.78
SEC13-216ENST00000479868 APLP2Q06481 763 aa19.92■□□□□ 0.78
SEC13-216ENST00000479868 ABCA10Q8WWZ4 1543 aa19.9■□□□□ 0.78
SEC13-216ENST00000479868 URB2Q14146 1524 aaKnown RBP19.89■□□□□ 0.77
SEC13-216ENST00000479868 ARHGAP35Q9NRY4 1499 aa19.88■□□□□ 0.77
SEC13-216ENST00000479868 CCER1Q8TC90 406 aaPredicted RBP19.87■□□□□ 0.77
SEC13-216ENST00000479868 PDS5BQ9NTI5 1447 aa19.84■□□□□ 0.77
SEC13-216ENST00000479868 KIF21AQ7Z4S6 1674 aa19.82■□□□□ 0.76
SEC13-216ENST00000479868 WDR97A6NE52 1622 aa19.8■□□□□ 0.76
SEC13-216ENST00000479868 KANK4Q5T7N3 995 aaPredicted RBP19.75■□□□□ 0.75
SEC13-216ENST00000479868 CUL7Q14999 1698 aa19.74■□□□□ 0.75
SEC13-216ENST00000479868 HNRNPUL2Q1KMD3 747 aaKnown RBP19.74■□□□□ 0.75
SEC13-216ENST00000479868 ABCA5Q8WWZ7 1642 aa19.7■□□□□ 0.74
SEC13-216ENST00000479868 TDRD9Q8NDG6 1382 aaKnown RBP19.7■□□□□ 0.74
SEC13-216ENST00000479868 GAPVD1Q14C86 1478 aa19.65■□□□□ 0.74
SEC13-216ENST00000479868 CTTNBP2Q8WZ74 1663 aa19.64■□□□□ 0.74
SEC13-216ENST00000479868 TARBP1Q13395 1621 aaKnown RBP19.64■□□□□ 0.73
SEC13-216ENST00000479868 P3H3Q8IVL6 736 aa19.61■□□□□ 0.73
SEC13-216ENST00000479868 TIAM1Q13009 1591 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms