RNA–Protein interactions for RNA: ENST00000478573.6

CDC42BPA-212, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5

Gene CDC42BPA, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-212ENST00000478573 AEBP2Q6ZN18 517 aaPredicted RBP26.02■■□□□ 1.76
CDC42BPA-212ENST00000478573 CHIC1Q5VXU3 224 aa24.9■■□□□ 1.58
CDC42BPA-212ENST00000478573 SENP3Q9H4L4 574 aaPredicted RBP22.18■■□□□ 1.14
CDC42BPA-212ENST00000478573 PHF23Q9BUL5 403 aaPredicted RBP21.93■■□□□ 1.1
CDC42BPA-212ENST00000478573 FOXD1Q16676 465 aa20.65■□□□□ 0.9
CDC42BPA-212ENST00000478573 PLPPR3Q6T4P5 718 aa20.01■□□□□ 0.79
CDC42BPA-212ENST00000478573 PPP6R1Q9UPN7 881 aa19.46■□□□□ 0.71
CDC42BPA-212ENST00000478573 ADRA2BP18089 450 aa19.45■□□□□ 0.7
CDC42BPA-212ENST00000478573 PIAS4Q8N2W9 510 aaPredicted RBP19.4■□□□□ 0.7
CDC42BPA-212ENST00000478573 MSH5O43196 834 aa19.24■□□□□ 0.67
CDC42BPA-212ENST00000478573 POTEDQ86YR6 584 aa18.44■□□□□ 0.54
CDC42BPA-212ENST00000478573 MAPK8IP2Q13387 824 aaPredicted RBP17.79■□□□□ 0.44
CDC42BPA-212ENST00000478573 SCAF1Q9H7N4 1312 aaKnown RBP17.78■□□□□ 0.44
CDC42BPA-212ENST00000478573 DMRT2Q9Y5R5 561 aa17.6■□□□□ 0.41
CDC42BPA-212ENST00000478573 PPP4R3CPQ6ZMV5 832 aa17.59■□□□□ 0.41
CDC42BPA-212ENST00000478573 CNKSR2Q8WXI2 1034 aa17.19■□□□□ 0.34
CDC42BPA-212ENST00000478573 DCAF8L1A6NGE4 600 aa17.02■□□□□ 0.32
CDC42BPA-212ENST00000478573 HOXD11P31277 338 aaPredicted RBP17.01■□□□□ 0.31
CDC42BPA-212ENST00000478573 NCBP3Q53F19 620 aaKnown RBP16.98■□□□□ 0.31
CDC42BPA-212ENST00000478573 RNF216Q9NWF9 866 aaPredicted RBP16.96■□□□□ 0.31
CDC42BPA-212ENST00000478573 NPM3O75607 178 aaKnown RBP16.72■□□□□ 0.27
CDC42BPA-212ENST00000478573 KCNA4P22459 653 aa16.61■□□□□ 0.25
CDC42BPA-212ENST00000478573 CACNB1Q02641 598 aaPredicted RBP16.44■□□□□ 0.22
CDC42BPA-212ENST00000478573 RNF39Q9H2S5 420 aa16.41■□□□□ 0.22
CDC42BPA-212ENST00000478573 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.31■□□□□ 0.24e-6■□□□□ 11.1
CDC42BPA-212ENST00000478573 DNAJC5BQ9UF47 199 aa16.3■□□□□ 0.2
CDC42BPA-212ENST00000478573 C1QBPQ07021 282 aaKnown RBP16.19■□□□□ 0.18
CDC42BPA-212ENST00000478573 U3KPZ7 1027 aaPredicted RBP15.94■□□□□ 0.14
CDC42BPA-212ENST00000478573 SLC4A2P04920 1241 aa15.89■□□□□ 0.13
CDC42BPA-212ENST00000478573 SLC4A1APQ9BWU0 796 aaKnown RBP15.73■□□□□ 0.11
CDC42BPA-212ENST00000478573 CAPN15O75808 1086 aa15.68■□□□□ 0.1
CDC42BPA-212ENST00000478573 SPINK5Q9NQ38 1064 aaPredicted RBP15.68■□□□□ 0.1
CDC42BPA-212ENST00000478573 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.56■□□□□ 0.08
CDC42BPA-212ENST00000478573 HNRNPUL2Q1KMD3 747 aaKnown RBP15.56■□□□□ 0.08
CDC42BPA-212ENST00000478573 APLP2Q06481 763 aa15.53■□□□□ 0.08
CDC42BPA-212ENST00000478573 TRHP20396 242 aaPredicted RBP15.5■□□□□ 0.07
CDC42BPA-212ENST00000478573 SAMD1Q6SPF0 538 aaPredicted RBP15.49■□□□□ 0.07
CDC42BPA-212ENST00000478573 MYCNP04198 464 aaPredicted RBP15.47■□□□□ 0.07
CDC42BPA-212ENST00000478573 DSG3P32926 999 aa15.46■□□□□ 0.07
CDC42BPA-212ENST00000478573 FOXD4L1Q9NU39 408 aa15.42■□□□□ 0.06
CDC42BPA-212ENST00000478573 ZNF219Q9P2Y4 722 aaPredicted RBP15.4■□□□□ 0.06
CDC42BPA-212ENST00000478573 ABCB7O75027 752 aa15.35■□□□□ 0.05
CDC42BPA-212ENST00000478573 ZBTB22O15209 634 aa15.24■□□□□ 0.03
CDC42BPA-212ENST00000478573 ATF5Q9Y2D1 282 aaPredicted RBP15.1■□□□□ 0.01
CDC42BPA-212ENST00000478573 POLA2Q14181 598 aa15.08■□□□□ 0
CDC42BPA-212ENST00000478573 ATXN8OSP0DMR3 200 aa14.87□□□□□ -0.03
CDC42BPA-212ENST00000478573 RBM42Q9BTD8 480 aaKnown RBP14.77□□□□□ -0.05
CDC42BPA-212ENST00000478573 EHMT2Q96KQ7 1210 aa14.76□□□□□ -0.05
CDC42BPA-212ENST00000478573 ZBTB12Q9Y330 459 aaPredicted RBP14.76□□□□□ -0.05
CDC42BPA-212ENST00000478573 CSRNP3Q8WYN3 585 aa14.74□□□□□ -0.05
CDC42BPA-212ENST00000478573 OSCARQ8IYS5 282 aa14.61□□□□□ -0.07
CDC42BPA-212ENST00000478573 FBLN2P98095 1184 aa14.54□□□□□ -0.08
CDC42BPA-212ENST00000478573 POTEHQ6S545 545 aa14.5□□□□□ -0.09
CDC42BPA-212ENST00000478573 AKT1S1Q96B36 256 aa14.45□□□□□ -0.1
CDC42BPA-212ENST00000478573 MKRN4PQ13434 485 aaPredicted RBP14.39□□□□□ -0.11
CDC42BPA-212ENST00000478573 CHRDL2Q6WN34 429 aa14.37□□□□□ -0.11
CDC42BPA-212ENST00000478573 REM2Q8IYK8 340 aaPredicted RBP14.33□□□□□ -0.12
CDC42BPA-212ENST00000478573 SPDYE2BA6NHP3 402 aa14.31□□□□□ -0.12
CDC42BPA-212ENST00000478573 SPDYE6P0CI01 402 aa14.31□□□□□ -0.12
CDC42BPA-212ENST00000478573 SPDYE2Q495Y8 402 aa14.31□□□□□ -0.12
CDC42BPA-212ENST00000478573 ZNF692Q9BU19 519 aaPredicted RBP14.22□□□□□ -0.13
CDC42BPA-212ENST00000478573 PITPNM1O00562 1244 aa14.2□□□□□ -0.14
CDC42BPA-212ENST00000478573 SSUH2Q9Y2M2 353 aa14.12□□□□□ -0.15
CDC42BPA-212ENST00000478573 CLEC11AQ9Y240 323 aa14.08□□□□□ -0.16
CDC42BPA-212ENST00000478573 PIP4P2Q8N4L2 257 aa14.06□□□□□ -0.16
CDC42BPA-212ENST00000478573 SPDYE1Q8NFV5 336 aaPredicted RBP14.04□□□□□ -0.16
CDC42BPA-212ENST00000478573 PABPN1Q86U42 306 aaKnown RBP eCLIP14.02□□□□□ -0.17
CDC42BPA-212ENST00000478573 FXR2P51116 673 aaKnown RBP eCLIP13.98□□□□□ -0.176e-7■□□□□ 9
CDC42BPA-212ENST00000478573 SPDYE4A6NLX3 237 aa13.87□□□□□ -0.19
CDC42BPA-212ENST00000478573 PRKAR2AP13861 404 aaKnown RBP13.85□□□□□ -0.19
CDC42BPA-212ENST00000478573 PRR29P0C7W0 189 aa13.83□□□□□ -0.2
CDC42BPA-212ENST00000478573 HAX1O00165 279 aa13.81□□□□□ -0.2
CDC42BPA-212ENST00000478573 CHADLQ6NUI6 762 aa13.76□□□□□ -0.21
CDC42BPA-212ENST00000478573 SP7Q8TDD2 431 aaPredicted RBP13.69□□□□□ -0.22
CDC42BPA-212ENST00000478573 STAG3Q9UJ98 1225 aa13.64□□□□□ -0.23
CDC42BPA-212ENST00000478573 EVX2Q03828 476 aa13.6□□□□□ -0.23
CDC42BPA-212ENST00000478573 FARP1Q9Y4F1 1045 aaPredicted RBP13.53□□□□□ -0.24
CDC42BPA-212ENST00000478573 C19orf67A6NJJ6 358 aa13.52□□□□□ -0.25
CDC42BPA-212ENST00000478573 CREBZFQ9NS37 354 aa13.49□□□□□ -0.25
CDC42BPA-212ENST00000478573 PROM2Q8N271 834 aa13.45□□□□□ -0.26
CDC42BPA-212ENST00000478573 CD44P16070 742 aaKnown RBP13.43□□□□□ -0.26
CDC42BPA-212ENST00000478573 FKBP8Q14318 412 aa13.42□□□□□ -0.26
CDC42BPA-212ENST00000478573 GABBR2O75899 941 aa13.3□□□□□ -0.28
CDC42BPA-212ENST00000478573 ZRANB1Q9UGI0 708 aa13.29□□□□□ -0.28
CDC42BPA-212ENST00000478573 NPM1P06748 294 aaKnown RBP eCLIP13.28□□□□□ -0.28
CDC42BPA-212ENST00000478573 MNX1P50219 401 aaPredicted RBP13.25□□□□□ -0.29
CDC42BPA-212ENST00000478573 PAK3O75914 559 aaPredicted RBP13.24□□□□□ -0.29
CDC42BPA-212ENST00000478573 MIER1Q8N108 512 aa13.23□□□□□ -0.29
CDC42BPA-212ENST00000478573 PLEKHG5O94827 1062 aa13.22□□□□□ -0.29
CDC42BPA-212ENST00000478573 ZNF579Q8NAF0 562 aaKnown RBP13.18□□□□□ -0.3
CDC42BPA-212ENST00000478573 PLCD3Q8N3E9 789 aa13.17□□□□□ -0.3
CDC42BPA-212ENST00000478573 PHF12Q96QT6 1004 aa13.12□□□□□ -0.31
CDC42BPA-212ENST00000478573 CLCN6P51797 869 aa13.1□□□□□ -0.31
CDC42BPA-212ENST00000478573 TSPYL2Q9H2G4 693 aaPredicted RBP13.1□□□□□ -0.31
CDC42BPA-212ENST00000478573 GALR2O43603 387 aaPredicted RBP13.05□□□□□ -0.32
CDC42BPA-212ENST00000478573 DCBLD2Q96PD2 775 aa13.04□□□□□ -0.32
CDC42BPA-212ENST00000478573 FBXO3Q9UK99 471 aa13.04□□□□□ -0.32
CDC42BPA-212ENST00000478573 POTEIP0CG38 1075 aa13□□□□□ -0.33
CDC42BPA-212ENST00000478573 ZBTB47Q9UFB7 747 aaPredicted RBP13□□□□□ -0.33
CDC42BPA-212ENST00000478573 RASEFQ8IZ41 740 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 201.8 ms