RNA–Protein interactions for RNA: ENST00000476162.5

VARS2-207, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 1 (best)

Gene VARS2, Length 2,228 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-207ENST00000476162 NISCHQ9Y2I1 1504 aa34.22■■■■□ 3.07
VARS2-207ENST00000476162 CCDC180Q9P1Z9 1646 aa29.31■■■□□ 2.28
VARS2-207ENST00000476162 ZCCHC6Q5VYS8 1495 aaKnown RBP28.87■■■□□ 2.21
VARS2-207ENST00000476162 SHROOM4Q9ULL8 1493 aa28.75■■■□□ 2.19
VARS2-207ENST00000476162 DCAF8L2P0C7V8 631 aa28.38■■■□□ 2.13
VARS2-207ENST00000476162 DCAF1Q9Y4B6 1507 aa28.14■■■□□ 2.1
VARS2-207ENST00000476162 SUPT5HO00267 1087 aaKnown RBP28.02■■■□□ 2.08
VARS2-207ENST00000476162 MYO15BQ96JP2 1530 aa27.5■■□□□ 1.99
VARS2-207ENST00000476162 ABCC9O60706 1549 aa27.41■■□□□ 1.98
VARS2-207ENST00000476162 SCRIBQ14160 1630 aa27.32■■□□□ 1.96
VARS2-207ENST00000476162 NACADO15069 1562 aa27.21■■□□□ 1.95
VARS2-207ENST00000476162 CHIC1Q5VXU3 224 aa27.1■■□□□ 1.93
VARS2-207ENST00000476162 RSF1Q96T23 1441 aaPredicted RBP26.91■■□□□ 1.9
VARS2-207ENST00000476162 RB1CC1Q8TDY2 1594 aa26.83■■□□□ 1.89
VARS2-207ENST00000476162 CECR2Q9BXF3 1484 aa26.68■■□□□ 1.86
VARS2-207ENST00000476162 MROH2BQ7Z745 1585 aa26.55■■□□□ 1.84
VARS2-207ENST00000476162 WIZO95785 1651 aa26.37■■□□□ 1.81
VARS2-207ENST00000476162 UNC13AQ9UPW8 1703 aa26.36■■□□□ 1.81
VARS2-207ENST00000476162 BAZ1AQ9NRL2 1556 aaPredicted RBP26.33■■□□□ 1.8
VARS2-207ENST00000476162 LOC105371045A0A1W2PR82 267 aa26.24■■□□□ 1.79
VARS2-207ENST00000476162 TRIM41Q8WV44 630 aa26.19■■□□□ 1.78
VARS2-207ENST00000476162 SMARCA4P51532 1647 aa26.13■■□□□ 1.77
VARS2-207ENST00000476162 PABPN1Q86U42 306 aaKnown RBP eCLIP26.12■■□□□ 1.771e-7■■■■□ 25.8
VARS2-207ENST00000476162 BICRAQ9NZM4 1560 aa26.09■■□□□ 1.77
VARS2-207ENST00000476162 TOP2AP11388 1531 aaKnown RBP26■■□□□ 1.75
VARS2-207ENST00000476162 FAM9AQ8IZU1 332 aaPredicted RBP25.89■■□□□ 1.74
VARS2-207ENST00000476162 CCDC88BA6NC98 1476 aa25.87■■□□□ 1.73
VARS2-207ENST00000476162 EIF4G1Q04637 1599 aaKnown RBP25.87■■□□□ 1.73
VARS2-207ENST00000476162 SMARCA2P51531 1590 aa25.83■■□□□ 1.73
VARS2-207ENST00000476162 PCGF6Q9BYE7 350 aa25.79■■□□□ 1.72
VARS2-207ENST00000476162 PEG3Q9GZU2 1588 aa25.7■■□□□ 1.7
VARS2-207ENST00000476162 EHMT2Q96KQ7 1210 aa25.61■■□□□ 1.69
VARS2-207ENST00000476162 ABCC8Q09428 1581 aa25.61■■□□□ 1.69
VARS2-207ENST00000476162 ATAD2BQ9ULI0 1458 aa25.57■■□□□ 1.68
VARS2-207ENST00000476162 HRCP23327 699 aa25.54■■□□□ 1.68
VARS2-207ENST00000476162 BAZ1BQ9UIG0 1483 aaKnown RBP25.47■■□□□ 1.67
VARS2-207ENST00000476162 TRIM26Q12899 539 aaPredicted RBP25.46■■□□□ 1.67
VARS2-207ENST00000476162 SOGA1O94964 1423 aa25.31■■□□□ 1.64
VARS2-207ENST00000476162 PELP1Q8IZL8 1130 aaKnown RBP25.3■■□□□ 1.64
VARS2-207ENST00000476162 WRNQ14191 1432 aaPredicted RBP eCLIP25.29■■□□□ 1.64
VARS2-207ENST00000476162 RUSC2Q8N2Y8 1516 aa25.2■■□□□ 1.62
VARS2-207ENST00000476162 EEA1Q15075 1411 aa25.19■■□□□ 1.62
VARS2-207ENST00000476162 NCAPD3P42695 1498 aa25.18■■□□□ 1.62
VARS2-207ENST00000476162 CSRNP3Q8WYN3 585 aa25.17■■□□□ 1.62
VARS2-207ENST00000476162 SYNJ1O43426 1573 aa25.15■■□□□ 1.62
VARS2-207ENST00000476162 HMGXB3Q12766 1538 aa25.13■■□□□ 1.61
VARS2-207ENST00000476162 TNIKQ9UKE5 1360 aa25.04■■□□□ 1.6
VARS2-207ENST00000476162 PPARGC1BQ86YN6 1023 aaKnown RBP25.02■■□□□ 1.6
VARS2-207ENST00000476162 CEP162Q5TB80 1403 aa25.02■■□□□ 1.6
VARS2-207ENST00000476162 UBTFP17480 764 aaKnown RBP24.99■■□□□ 1.59
VARS2-207ENST00000476162 GOLGA3Q08378 1498 aa24.96■■□□□ 1.59
VARS2-207ENST00000476162 TOP2BQ02880 1626 aa24.91■■□□□ 1.58
VARS2-207ENST00000476162 CEP164Q9UPV0 1460 aa24.88■■□□□ 1.57
VARS2-207ENST00000476162 CFTRP13569 1480 aa24.85■■□□□ 1.57
VARS2-207ENST00000476162 KIF21BO75037 1637 aa24.84■■□□□ 1.57
VARS2-207ENST00000476162 BIVM-ERCC5R4GMW8 1640 aa24.83■■□□□ 1.57
VARS2-207ENST00000476162 CUX1P39880 1505 aa24.75■■□□□ 1.55
VARS2-207ENST00000476162 ZEB1P37275 1124 aaPredicted RBP24.73■■□□□ 1.55
VARS2-207ENST00000476162 RAPGEF2Q9Y4G8 1499 aa24.73■■□□□ 1.55
VARS2-207ENST00000476162 CC2D2AQ9P2K1 1620 aa24.71■■□□□ 1.55
VARS2-207ENST00000476162 TTBK1Q5TCY1 1321 aaPredicted RBP24.69■■□□□ 1.54
VARS2-207ENST00000476162 CLIP1P30622 1438 aa24.65■■□□□ 1.54
VARS2-207ENST00000476162 CADPSQ9ULU8 1353 aa24.65■■□□□ 1.54
VARS2-207ENST00000476162 PRDM2Q13029 1718 aa24.6■■□□□ 1.53
VARS2-207ENST00000476162 PRXQ9BXM0 1461 aa24.57■■□□□ 1.52
VARS2-207ENST00000476162 KIF27Q86VH2 1401 aa24.56■■□□□ 1.52
VARS2-207ENST00000476162 RANGAP1P46060 587 aaPredicted RBP24.53■■□□□ 1.52
VARS2-207ENST00000476162 ERICH3Q5RHP9 1530 aa24.52■■□□□ 1.52
VARS2-207ENST00000476162 VPS8Q8N3P4 1428 aa24.5■■□□□ 1.51
VARS2-207ENST00000476162 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.48■■□□□ 1.51
VARS2-207ENST00000476162 MYT1Q01538 1121 aa24.47■■□□□ 1.51
VARS2-207ENST00000476162 CCER1Q8TC90 406 aaPredicted RBP24.41■■□□□ 1.5
VARS2-207ENST00000476162 FANCD2Q9BXW9 1451 aa24.39■■□□□ 1.5
VARS2-207ENST00000476162 CUX2O14529 1486 aa24.39■■□□□ 1.49
VARS2-207ENST00000476162 FGD5Q6ZNL6 1462 aa24.38■■□□□ 1.49
VARS2-207ENST00000476162 APLP2Q06481 763 aa24.36■■□□□ 1.49
VARS2-207ENST00000476162 SCAF1Q9H7N4 1312 aaKnown RBP24.34■■□□□ 1.49
VARS2-207ENST00000476162 IGF1RP08069 1367 aa24.33■■□□□ 1.49
VARS2-207ENST00000476162 NESP48681 1621 aa24.31■■□□□ 1.48
VARS2-207ENST00000476162 ARAP1Q96P48 1450 aa24.3■■□□□ 1.48
VARS2-207ENST00000476162 DNMBPQ6XZF7 1577 aa24.21■■□□□ 1.47
VARS2-207ENST00000476162 CARMIL1Q5VZK9 1371 aa24.21■■□□□ 1.47
VARS2-207ENST00000476162 TOPBP1Q92547 1522 aa24.19■■□□□ 1.46
VARS2-207ENST00000476162 ARHGAP35Q9NRY4 1499 aa24.17■■□□□ 1.46
VARS2-207ENST00000476162 HNRNPUL2Q1KMD3 747 aaKnown RBP24.16■■□□□ 1.46
VARS2-207ENST00000476162 RAD54L2Q9Y4B4 1467 aa24.16■■□□□ 1.46
VARS2-207ENST00000476162 LAMC3Q9Y6N6 1575 aa24.15■■□□□ 1.46
VARS2-207ENST00000476162 DNAJC5BQ9UF47 199 aa24.15■■□□□ 1.46
VARS2-207ENST00000476162 POLA1P09884 1462 aaPredicted RBP24.15■■□□□ 1.46
VARS2-207ENST00000476162 ABCA10Q8WWZ4 1543 aa24.11■■□□□ 1.45
VARS2-207ENST00000476162 KANK4Q5T7N3 995 aaPredicted RBP24.1■■□□□ 1.45
VARS2-207ENST00000476162 URB2Q14146 1524 aaKnown RBP24.05■■□□□ 1.44
VARS2-207ENST00000476162 PDS5BQ9NTI5 1447 aa24.02■■□□□ 1.44
VARS2-207ENST00000476162 CUL7Q14999 1698 aa23.9■■□□□ 1.42
VARS2-207ENST00000476162 TDRD9Q8NDG6 1382 aaKnown RBP23.9■■□□□ 1.42
VARS2-207ENST00000476162 WDR97A6NE52 1622 aa23.89■■□□□ 1.42
VARS2-207ENST00000476162 P3H3Q8IVL6 736 aa23.88■■□□□ 1.41
VARS2-207ENST00000476162 KIF21AQ7Z4S6 1674 aa23.88■■□□□ 1.41
VARS2-207ENST00000476162 RRBP1Q9P2E9 1410 aaKnown RBP23.87■■□□□ 1.41
VARS2-207ENST00000476162 FHAD1B1AJZ9 1412 aa23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms