RNA–Protein interactions for RNA: ENST00000474835.5

USP16-205, Transcript of ubiquitin specific peptidase 16, humanhuman

TSL 1 (best)

Gene USP16, Length 3,835 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP16-205ENST00000474835 NISCHQ9Y2I1 1504 aa8.55□□□□□ -1.04
USP16-205ENST00000474835 AEBP2Q6ZN18 517 aaPredicted RBP7.94□□□□□ -1.14
USP16-205ENST00000474835 MYO15BQ96JP2 1530 aa7.56□□□□□ -1.2
USP16-205ENST00000474835 CCDC180Q9P1Z9 1646 aa7.5□□□□□ -1.21
USP16-205ENST00000474835 ZCCHC6Q5VYS8 1495 aaKnown RBP7.43□□□□□ -1.22
USP16-205ENST00000474835 CHIC1Q5VXU3 224 aa7.43□□□□□ -1.22
USP16-205ENST00000474835 DCAF1Q9Y4B6 1507 aa7.39□□□□□ -1.23
USP16-205ENST00000474835 HRCP23327 699 aa7.32□□□□□ -1.24
USP16-205ENST00000474835 EIF4G1Q04637 1599 aaKnown RBP7.22□□□□□ -1.25
USP16-205ENST00000474835 ABCC9O60706 1549 aa7.15□□□□□ -1.27
USP16-205ENST00000474835 PELP1Q8IZL8 1130 aaKnown RBP7.08□□□□□ -1.28
USP16-205ENST00000474835 SCAF1Q9H7N4 1312 aaKnown RBP6.93□□□□□ -1.3
USP16-205ENST00000474835 RB1CC1Q8TDY2 1594 aa6.91□□□□□ -1.3
USP16-205ENST00000474835 NACADO15069 1562 aa6.88□□□□□ -1.31
USP16-205ENST00000474835 WRNQ14191 1432 aaPredicted RBP eCLIP6.86□□□□□ -1.31
USP16-205ENST00000474835 PPARGC1BQ86YN6 1023 aaKnown RBP6.85□□□□□ -1.31
USP16-205ENST00000474835 SENP3Q9H4L4 574 aaPredicted RBP6.83□□□□□ -1.32
USP16-205ENST00000474835 MYT1Q01538 1121 aa6.82□□□□□ -1.32
USP16-205ENST00000474835 BAZ1AQ9NRL2 1556 aaPredicted RBP6.79□□□□□ -1.32
USP16-205ENST00000474835 TRIM26Q12899 539 aaPredicted RBP6.75□□□□□ -1.33
USP16-205ENST00000474835 RSF1Q96T23 1441 aaPredicted RBP6.75□□□□□ -1.33
USP16-205ENST00000474835 ZEB1P37275 1124 aaPredicted RBP6.7□□□□□ -1.34
USP16-205ENST00000474835 PEG3Q9GZU2 1588 aa6.68□□□□□ -1.34
USP16-205ENST00000474835 UNC13AQ9UPW8 1703 aa6.68□□□□□ -1.34
USP16-205ENST00000474835 CUX2O14529 1486 aa6.68□□□□□ -1.34
USP16-205ENST00000474835 PCGF6Q9BYE7 350 aa6.67□□□□□ -1.34
USP16-205ENST00000474835 KIF21BO75037 1637 aa6.67□□□□□ -1.34
USP16-205ENST00000474835 ACIN1Q9UKV3 1341 aaKnown RBP6.66□□□□□ -1.34
USP16-205ENST00000474835 TRIM41Q8WV44 630 aa6.66□□□□□ -1.34
USP16-205ENST00000474835 PHF23Q9BUL5 403 aaPredicted RBP6.66□□□□□ -1.34
USP16-205ENST00000474835 TTBK1Q5TCY1 1321 aaPredicted RBP6.64□□□□□ -1.35
USP16-205ENST00000474835 WIZO95785 1651 aa6.63□□□□□ -1.35
USP16-205ENST00000474835 SMARCA2P51531 1590 aa6.6□□□□□ -1.35
USP16-205ENST00000474835 NEUROD1Q13562 356 aa6.59□□□□□ -1.35
USP16-205ENST00000474835 SHROOM4Q9ULL8 1493 aa6.59□□□□□ -1.35
USP16-205ENST00000474835 TOP2AP11388 1531 aaKnown RBP6.59□□□□□ -1.35
USP16-205ENST00000474835 MROH2BQ7Z745 1585 aa6.58□□□□□ -1.36
USP16-205ENST00000474835 SYNJ1O43426 1573 aa6.56□□□□□ -1.36
USP16-205ENST00000474835 BIVM-ERCC5R4GMW8 1640 aa6.56□□□□□ -1.36
USP16-205ENST00000474835 POLR1AO95602 1720 aaPredicted RBP6.55□□□□□ -1.36
USP16-205ENST00000474835 PRDM2Q13029 1718 aa6.53□□□□□ -1.36
USP16-205ENST00000474835 SMARCA4P51532 1647 aa6.52□□□□□ -1.37
USP16-205ENST00000474835 LOC105371045A0A1W2PR82 267 aa6.51□□□□□ -1.37
USP16-205ENST00000474835 SCRIBQ14160 1630 aa6.49□□□□□ -1.37
USP16-205ENST00000474835 BAZ1BQ9UIG0 1483 aaKnown RBP6.49□□□□□ -1.37
USP16-205ENST00000474835 ABCC8Q09428 1581 aa6.47□□□□□ -1.37
USP16-205ENST00000474835 CLSPNQ9HAW4 1339 aa6.47□□□□□ -1.37
USP16-205ENST00000474835 EEA1Q15075 1411 aa6.47□□□□□ -1.37
USP16-205ENST00000474835 KDM5BQ9UGL1 1544 aa6.47□□□□□ -1.37
USP16-205ENST00000474835 TNIKQ9UKE5 1360 aa6.47□□□□□ -1.37
USP16-205ENST00000474835 SUPT5HO00267 1087 aaKnown RBP6.45□□□□□ -1.38
USP16-205ENST00000474835 CECR2Q9BXF3 1484 aa6.45□□□□□ -1.38
USP16-205ENST00000474835 CFAP43Q8NDM7 1665 aa6.45□□□□□ -1.38
USP16-205ENST00000474835 ERICH3Q5RHP9 1530 aa6.45□□□□□ -1.38
USP16-205ENST00000474835 MAPKBP1O60336 1514 aa6.44□□□□□ -1.38
USP16-205ENST00000474835 MAP3K1Q13233 1512 aa6.44□□□□□ -1.38
USP16-205ENST00000474835 ABCA5Q8WWZ7 1642 aa6.44□□□□□ -1.38
USP16-205ENST00000474835 CCDC88BA6NC98 1476 aa6.42□□□□□ -1.38
USP16-205ENST00000474835 TOP2BQ02880 1626 aa6.41□□□□□ -1.38
USP16-205ENST00000474835 NCAPD3P42695 1498 aa6.41□□□□□ -1.38
USP16-205ENST00000474835 CEP162Q5TB80 1403 aa6.41□□□□□ -1.38
USP16-205ENST00000474835 RRBP1Q9P2E9 1410 aaKnown RBP6.4□□□□□ -1.38
USP16-205ENST00000474835 GTF3C3Q9Y5Q9 886 aa6.4□□□□□ -1.38
USP16-205ENST00000474835 LRRIQ1Q96JM4 1722 aa6.38□□□□□ -1.39
USP16-205ENST00000474835 BICRAQ9NZM4 1560 aa6.38□□□□□ -1.39
USP16-205ENST00000474835 FOXD1Q16676 465 aa6.35□□□□□ -1.39
USP16-205ENST00000474835 ARAP1Q96P48 1450 aa6.35□□□□□ -1.39
USP16-205ENST00000474835 FAM9AQ8IZU1 332 aaPredicted RBP6.35□□□□□ -1.39
USP16-205ENST00000474835 RUSC2Q8N2Y8 1516 aa6.33□□□□□ -1.4
USP16-205ENST00000474835 GOLGA3Q08378 1498 aa6.33□□□□□ -1.4
USP16-205ENST00000474835 TSHZ2Q9NRE2 1034 aa6.33□□□□□ -1.4
USP16-205ENST00000474835 PRXQ9BXM0 1461 aa6.32□□□□□ -1.4
USP16-205ENST00000474835 VPS8Q8N3P4 1428 aa6.32□□□□□ -1.4
USP16-205ENST00000474835 DIEXFQ68CQ4 756 aaKnown RBP6.31□□□□□ -1.4
USP16-205ENST00000474835 DHX57Q6P158 1386 aaKnown RBP6.31□□□□□ -1.4
USP16-205ENST00000474835 APLP2Q06481 763 aa6.31□□□□□ -1.4
USP16-205ENST00000474835 ANP32EQ9BTT0 268 aa6.31□□□□□ -1.4
USP16-205ENST00000474835 CLIP1P30622 1438 aa6.3□□□□□ -1.4
USP16-205ENST00000474835 BCL11AQ9H165 835 aa6.3□□□□□ -1.4
USP16-205ENST00000474835 VIRMAQ69YN4 1812 aaKnown RBP6.3□□□□□ -1.4
USP16-205ENST00000474835 ZNF316A6NFI3 1004 aaPredicted RBP6.29□□□□□ -1.4
USP16-205ENST00000474835 SOGA1O94964 1423 aa6.29□□□□□ -1.4
USP16-205ENST00000474835 WDR97A6NE52 1622 aa6.29□□□□□ -1.4
USP16-205ENST00000474835 SUPT16HQ9Y5B9 1047 aaKnown RBP6.29□□□□□ -1.4
USP16-205ENST00000474835 GCC2Q8IWJ2 1684 aa6.28□□□□□ -1.4
USP16-205ENST00000474835 CEP164Q9UPV0 1460 aa6.28□□□□□ -1.4
USP16-205ENST00000474835 E9PCH4 1651 aa6.28□□□□□ -1.4
USP16-205ENST00000474835 KIF21AQ7Z4S6 1674 aa6.27□□□□□ -1.41
USP16-205ENST00000474835 ARHGEF11O15085 1522 aa6.26□□□□□ -1.41
USP16-205ENST00000474835 NCOA2Q15596 1464 aa6.25□□□□□ -1.41
USP16-205ENST00000474835 TIAM1Q13009 1591 aa6.25□□□□□ -1.41
USP16-205ENST00000474835 HECW1Q76N89 1606 aa6.25□□□□□ -1.41
USP16-205ENST00000474835 CENPBP07199 599 aaPredicted RBP6.23□□□□□ -1.41
USP16-205ENST00000474835 MIER1Q8N108 512 aa6.23□□□□□ -1.41
USP16-205ENST00000474835 DENND4BO75064 1496 aaPredicted RBP6.23□□□□□ -1.41
USP16-205ENST00000474835 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.22□□□□□ -1.41
USP16-205ENST00000474835 PRKCSHP14314 528 aaPredicted RBP6.21□□□□□ -1.41
USP16-205ENST00000474835 MSH5O43196 834 aa6.2□□□□□ -1.42
USP16-205ENST00000474835 FANCIQ9NVI1 1328 aa6.2□□□□□ -1.42
USP16-205ENST00000474835 CTTNBP2Q8WZ74 1663 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms