RNA–Protein interactions for RNA: ENST00000473778.5

C9orf3-214, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 2,396 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-214ENST00000473778 NISCHQ9Y2I1 1504 aa22.72■■□□□ 1.23
C9orf3-214ENST00000473778 AEBP2Q6ZN18 517 aaPredicted RBP21.55■■□□□ 1.04
C9orf3-214ENST00000473778 CHIC1Q5VXU3 224 aa20.75■□□□□ 0.91
C9orf3-214ENST00000473778 SHROOM4Q9ULL8 1493 aa19.46■□□□□ 0.71
C9orf3-214ENST00000473778 CCDC180Q9P1Z9 1646 aa19.25■□□□□ 0.67
C9orf3-214ENST00000473778 ZCCHC6Q5VYS8 1495 aaKnown RBP19.24■□□□□ 0.67
C9orf3-214ENST00000473778 SUPT5HO00267 1087 aaKnown RBP19.07■□□□□ 0.64
C9orf3-214ENST00000473778 DCAF8L2P0C7V8 631 aa18.79■□□□□ 0.6
C9orf3-214ENST00000473778 MYO15BQ96JP2 1530 aa18.64■□□□□ 0.57
C9orf3-214ENST00000473778 DCAF1Q9Y4B6 1507 aa18.59■□□□□ 0.57
C9orf3-214ENST00000473778 PHF23Q9BUL5 403 aaPredicted RBP18.32■□□□□ 0.52
C9orf3-214ENST00000473778 ABCC9O60706 1549 aa18.18■□□□□ 0.5
C9orf3-214ENST00000473778 SENP3Q9H4L4 574 aaPredicted RBP18.17■□□□□ 0.5
C9orf3-214ENST00000473778 SCRIBQ14160 1630 aa18.12■□□□□ 0.49
C9orf3-214ENST00000473778 LOC105371045A0A1W2PR82 267 aa18.08■□□□□ 0.48
C9orf3-214ENST00000473778 HRCP23327 699 aa18.08■□□□□ 0.48
C9orf3-214ENST00000473778 PCGF6Q9BYE7 350 aa18.06■□□□□ 0.48
C9orf3-214ENST00000473778 RSF1Q96T23 1441 aaPredicted RBP18.02■□□□□ 0.48
C9orf3-214ENST00000473778 RB1CC1Q8TDY2 1594 aa17.9■□□□□ 0.46
C9orf3-214ENST00000473778 PPARGC1BQ86YN6 1023 aaKnown RBP17.8■□□□□ 0.44
C9orf3-214ENST00000473778 CECR2Q9BXF3 1484 aa17.78■□□□□ 0.44
C9orf3-214ENST00000473778 NACADO15069 1562 aa17.77■□□□□ 0.43
C9orf3-214ENST00000473778 MROH2BQ7Z745 1585 aa17.71■□□□□ 0.43
C9orf3-214ENST00000473778 TRIM41Q8WV44 630 aa17.7■□□□□ 0.42
C9orf3-214ENST00000473778 WIZO95785 1651 aa17.64■□□□□ 0.41
C9orf3-214ENST00000473778 TRIM26Q12899 539 aaPredicted RBP17.64■□□□□ 0.41
C9orf3-214ENST00000473778 FAM9AQ8IZU1 332 aaPredicted RBP17.62■□□□□ 0.41
C9orf3-214ENST00000473778 EHMT2Q96KQ7 1210 aa17.52■□□□□ 0.39
C9orf3-214ENST00000473778 BAZ1AQ9NRL2 1556 aaPredicted RBP17.47■□□□□ 0.39
C9orf3-214ENST00000473778 EIF4G1Q04637 1599 aaKnown RBP17.45■□□□□ 0.38
C9orf3-214ENST00000473778 UNC13AQ9UPW8 1703 aa17.36■□□□□ 0.37
C9orf3-214ENST00000473778 SMARCA4P51532 1647 aa17.3■□□□□ 0.36
C9orf3-214ENST00000473778 TOP2AP11388 1531 aaKnown RBP17.28■□□□□ 0.36
C9orf3-214ENST00000473778 PELP1Q8IZL8 1130 aaKnown RBP17.28■□□□□ 0.36
C9orf3-214ENST00000473778 ABCC8Q09428 1581 aa17.27■□□□□ 0.36
C9orf3-214ENST00000473778 CCDC88BA6NC98 1476 aa17.25■□□□□ 0.35
C9orf3-214ENST00000473778 SMARCA2P51531 1590 aa17.24■□□□□ 0.35
C9orf3-214ENST00000473778 ZEB1P37275 1124 aaPredicted RBP17.17■□□□□ 0.34
C9orf3-214ENST00000473778 BICRAQ9NZM4 1560 aa17.11■□□□□ 0.33
C9orf3-214ENST00000473778 SOGA1O94964 1423 aa17.1■□□□□ 0.33
C9orf3-214ENST00000473778 PABPN1Q86U42 306 aaKnown RBP eCLIP17.08■□□□□ 0.32
C9orf3-214ENST00000473778 RUSC2Q8N2Y8 1516 aa17.05■□□□□ 0.32
C9orf3-214ENST00000473778 CEP162Q5TB80 1403 aa17■□□□□ 0.31
C9orf3-214ENST00000473778 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17■□□□□ 0.31
C9orf3-214ENST00000473778 FOXD1Q16676 465 aa16.99■□□□□ 0.31
C9orf3-214ENST00000473778 WRNQ14191 1432 aaPredicted RBP eCLIP16.97■□□□□ 0.31
C9orf3-214ENST00000473778 TTBK1Q5TCY1 1321 aaPredicted RBP16.96■□□□□ 0.31
C9orf3-214ENST00000473778 PEG3Q9GZU2 1588 aa16.95■□□□□ 0.3
C9orf3-214ENST00000473778 TNIKQ9UKE5 1360 aa16.94■□□□□ 0.3
C9orf3-214ENST00000473778 CSRNP3Q8WYN3 585 aa16.92■□□□□ 0.3
C9orf3-214ENST00000473778 SYNJ1O43426 1573 aa16.88■□□□□ 0.29
C9orf3-214ENST00000473778 EEA1Q15075 1411 aa16.88■□□□□ 0.29
C9orf3-214ENST00000473778 CCER1Q8TC90 406 aaPredicted RBP16.87■□□□□ 0.29
C9orf3-214ENST00000473778 UBTFP17480 764 aaKnown RBP16.85■□□□□ 0.29
C9orf3-214ENST00000473778 ATAD2BQ9ULI0 1458 aa16.83■□□□□ 0.28
C9orf3-214ENST00000473778 GOLGA3Q08378 1498 aa16.82■□□□□ 0.28
C9orf3-214ENST00000473778 BAZ1BQ9UIG0 1483 aaKnown RBP16.76■□□□□ 0.27
C9orf3-214ENST00000473778 SCAF1Q9H7N4 1312 aaKnown RBP16.75■□□□□ 0.27
C9orf3-214ENST00000473778 MYT1Q01538 1121 aa16.74■□□□□ 0.27
C9orf3-214ENST00000473778 PLPPR3Q6T4P5 718 aa16.74■□□□□ 0.27
C9orf3-214ENST00000473778 KIF21BO75037 1637 aa16.73■□□□□ 0.27
C9orf3-214ENST00000473778 CEP164Q9UPV0 1460 aa16.72■□□□□ 0.27
C9orf3-214ENST00000473778 RAPGEF2Q9Y4G8 1499 aa16.67■□□□□ 0.26
C9orf3-214ENST00000473778 CLIP1P30622 1438 aa16.65■□□□□ 0.26
C9orf3-214ENST00000473778 TOP2BQ02880 1626 aa16.62■□□□□ 0.25
C9orf3-214ENST00000473778 DIEXFQ68CQ4 756 aaKnown RBP16.59■□□□□ 0.25
C9orf3-214ENST00000473778 VPS8Q8N3P4 1428 aa16.59■□□□□ 0.25
C9orf3-214ENST00000473778 BIVM-ERCC5R4GMW8 1640 aa16.56■□□□□ 0.24
C9orf3-214ENST00000473778 RANGAP1P46060 587 aaPredicted RBP16.56■□□□□ 0.24
C9orf3-214ENST00000473778 HNRNPUL2Q1KMD3 747 aaKnown RBP16.55■□□□□ 0.24
C9orf3-214ENST00000473778 NEUROD1Q13562 356 aa16.54■□□□□ 0.24
C9orf3-214ENST00000473778 ACIN1Q9UKV3 1341 aaKnown RBP16.5■□□□□ 0.23
C9orf3-214ENST00000473778 CUX1P39880 1505 aa16.48■□□□□ 0.23
C9orf3-214ENST00000473778 PRXQ9BXM0 1461 aa16.47■□□□□ 0.23
C9orf3-214ENST00000473778 NCAPD3P42695 1498 aa16.46■□□□□ 0.23
C9orf3-214ENST00000473778 HMGXB3Q12766 1538 aa16.46■□□□□ 0.23
C9orf3-214ENST00000473778 ZNF316A6NFI3 1004 aaPredicted RBP16.44■□□□□ 0.22
C9orf3-214ENST00000473778 ERICH3Q5RHP9 1530 aa16.44■□□□□ 0.22
C9orf3-214ENST00000473778 ARAP1Q96P48 1450 aa16.43■□□□□ 0.22
C9orf3-214ENST00000473778 APLP2Q06481 763 aa16.4■□□□□ 0.22
C9orf3-214ENST00000473778 CFTRP13569 1480 aa16.38■□□□□ 0.21
C9orf3-214ENST00000473778 KANK4Q5T7N3 995 aaPredicted RBP16.37■□□□□ 0.21
C9orf3-214ENST00000473778 DNAJC5BQ9UF47 199 aa16.34■□□□□ 0.21
C9orf3-214ENST00000473778 GTF3C3Q9Y5Q9 886 aa16.34■□□□□ 0.21
C9orf3-214ENST00000473778 KIF27Q86VH2 1401 aa16.32■□□□□ 0.2
C9orf3-214ENST00000473778 CENPBP07199 599 aaPredicted RBP16.29■□□□□ 0.2
C9orf3-214ENST00000473778 MIER1Q8N108 512 aa16.28■□□□□ 0.2
C9orf3-214ENST00000473778 ARHGAP35Q9NRY4 1499 aa16.28■□□□□ 0.2
C9orf3-214ENST00000473778 DHX57Q6P158 1386 aaKnown RBP16.26■□□□□ 0.19
C9orf3-214ENST00000473778 PPP6R1Q9UPN7 881 aa16.26■□□□□ 0.19
C9orf3-214ENST00000473778 PRDM2Q13029 1718 aa16.26■□□□□ 0.19
C9orf3-214ENST00000473778 YTHDC1Q96MU7 727 aaKnown RBP16.24■□□□□ 0.19
C9orf3-214ENST00000473778 RRBP1Q9P2E9 1410 aaKnown RBP16.23■□□□□ 0.19
C9orf3-214ENST00000473778 ADRA2BP18089 450 aa16.21■□□□□ 0.19
C9orf3-214ENST00000473778 IGF1RP08069 1367 aa16.2■□□□□ 0.18
C9orf3-214ENST00000473778 CUX2O14529 1486 aa16.2■□□□□ 0.18
C9orf3-214ENST00000473778 CADPSQ9ULU8 1353 aa16.15■□□□□ 0.18
C9orf3-214ENST00000473778 FGD5Q6ZNL6 1462 aa16.14■□□□□ 0.17
C9orf3-214ENST00000473778 CLSPNQ9HAW4 1339 aa16.14■□□□□ 0.17
C9orf3-214ENST00000473778 CCNB3Q8WWL7 1395 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms