RNA–Protein interactions for RNA: ENST00000472318.1

SCAF4-205, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 3

Gene SCAF4, Length 796 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-205ENST00000472318 AEBP2Q6ZN18 517 aaPredicted RBP33.32■■■□□ 2.92
SCAF4-205ENST00000472318 CHIC1Q5VXU3 224 aa32.02■■■□□ 2.72
SCAF4-205ENST00000472318 SENP3Q9H4L4 574 aaPredicted RBP28.38■■■□□ 2.13
SCAF4-205ENST00000472318 PHF23Q9BUL5 403 aaPredicted RBP28.09■■■□□ 2.09
SCAF4-205ENST00000472318 FOXD1Q16676 465 aa26.38■■□□□ 1.81
SCAF4-205ENST00000472318 PLPPR3Q6T4P5 718 aa25.75■■□□□ 1.71
SCAF4-205ENST00000472318 PPP6R1Q9UPN7 881 aa24.95■■□□□ 1.58
SCAF4-205ENST00000472318 ADRA2BP18089 450 aa24.87■■□□□ 1.57
SCAF4-205ENST00000472318 PIAS4Q8N2W9 510 aaPredicted RBP24.74■■□□□ 1.55
SCAF4-205ENST00000472318 MSH5O43196 834 aa24.56■■□□□ 1.52
SCAF4-205ENST00000472318 POTEDQ86YR6 584 aa23.31■■□□□ 1.32
SCAF4-205ENST00000472318 SCAF1Q9H7N4 1312 aaKnown RBP22.77■■□□□ 1.24
SCAF4-205ENST00000472318 MAPK8IP2Q13387 824 aaPredicted RBP22.71■■□□□ 1.23
SCAF4-205ENST00000472318 PPP4R3CPQ6ZMV5 832 aa22.59■■□□□ 1.21
SCAF4-205ENST00000472318 DMRT2Q9Y5R5 561 aa22.57■■□□□ 1.2
SCAF4-205ENST00000472318 CNKSR2Q8WXI2 1034 aa22.1■■□□□ 1.13
SCAF4-205ENST00000472318 HOXD11P31277 338 aaPredicted RBP21.9■■□□□ 1.1
SCAF4-205ENST00000472318 NCBP3Q53F19 620 aaKnown RBP21.84■■□□□ 1.09
SCAF4-205ENST00000472318 RNF216Q9NWF9 866 aaPredicted RBP21.82■■□□□ 1.08
SCAF4-205ENST00000472318 NPM3O75607 178 aaKnown RBP21.55■■□□□ 1.04
SCAF4-205ENST00000472318 DCAF8L1A6NGE4 600 aa21.52■■□□□ 1.04
SCAF4-205ENST00000472318 KCNA4P22459 653 aa21.46■■□□□ 1.03
SCAF4-205ENST00000472318 DNAJC5BQ9UF47 199 aa21.11■□□□□ 0.97
SCAF4-205ENST00000472318 RNF39Q9H2S5 420 aa21.01■□□□□ 0.95
SCAF4-205ENST00000472318 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.79■□□□□ 0.92
SCAF4-205ENST00000472318 CACNB1Q02641 598 aaPredicted RBP20.78■□□□□ 0.92
SCAF4-205ENST00000472318 C1QBPQ07021 282 aaKnown RBP20.71■□□□□ 0.91
SCAF4-205ENST00000472318 SLC4A2P04920 1241 aa20.49■□□□□ 0.87
SCAF4-205ENST00000472318 U3KPZ7 1027 aaPredicted RBP20.45■□□□□ 0.86
SCAF4-205ENST00000472318 SLC4A1APQ9BWU0 796 aaKnown RBP20.32■□□□□ 0.84
SCAF4-205ENST00000472318 SPINK5Q9NQ38 1064 aaPredicted RBP20.01■□□□□ 0.79
SCAF4-205ENST00000472318 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20■□□□□ 0.79
SCAF4-205ENST00000472318 HNRNPUL2Q1KMD3 747 aaKnown RBP20■□□□□ 0.79
SCAF4-205ENST00000472318 CAPN15O75808 1086 aa19.93■□□□□ 0.78
SCAF4-205ENST00000472318 MYCNP04198 464 aaPredicted RBP19.93■□□□□ 0.78
SCAF4-205ENST00000472318 FOXD4L1Q9NU39 408 aa19.92■□□□□ 0.78
SCAF4-205ENST00000472318 APLP2Q06481 763 aa19.91■□□□□ 0.78
SCAF4-205ENST00000472318 SAMD1Q6SPF0 538 aaPredicted RBP19.9■□□□□ 0.78
SCAF4-205ENST00000472318 DSG3P32926 999 aa19.78■□□□□ 0.76
SCAF4-205ENST00000472318 ZBTB22O15209 634 aa19.76■□□□□ 0.75
SCAF4-205ENST00000472318 ZNF219Q9P2Y4 722 aaPredicted RBP19.74■□□□□ 0.75
SCAF4-205ENST00000472318 TRHP20396 242 aaPredicted RBP19.69■□□□□ 0.74
SCAF4-205ENST00000472318 ABCB7O75027 752 aa19.51■□□□□ 0.71
SCAF4-205ENST00000472318 ATF5Q9Y2D1 282 aaPredicted RBP19.42■□□□□ 0.7
SCAF4-205ENST00000472318 ATXN8OSP0DMR3 200 aa19.3■□□□□ 0.68
SCAF4-205ENST00000472318 POLA2Q14181 598 aa19.27■□□□□ 0.68
SCAF4-205ENST00000472318 CSRNP3Q8WYN3 585 aa19.16■□□□□ 0.66
SCAF4-205ENST00000472318 EHMT2Q96KQ7 1210 aa19.09■□□□□ 0.65
SCAF4-205ENST00000472318 ZBTB12Q9Y330 459 aaPredicted RBP18.97■□□□□ 0.63
SCAF4-205ENST00000472318 RBM42Q9BTD8 480 aaKnown RBP18.87■□□□□ 0.61
SCAF4-205ENST00000472318 OSCARQ8IYS5 282 aa18.68■□□□□ 0.58
SCAF4-205ENST00000472318 FBLN2P98095 1184 aa18.62■□□□□ 0.57
SCAF4-205ENST00000472318 MKRN4PQ13434 485 aaPredicted RBP18.57■□□□□ 0.56
SCAF4-205ENST00000472318 AKT1S1Q96B36 256 aa18.51■□□□□ 0.55
SCAF4-205ENST00000472318 SPDYE2BA6NHP3 402 aa18.4■□□□□ 0.54
SCAF4-205ENST00000472318 SPDYE6P0CI01 402 aa18.4■□□□□ 0.54
SCAF4-205ENST00000472318 SPDYE2Q495Y8 402 aa18.4■□□□□ 0.54
SCAF4-205ENST00000472318 POTEHQ6S545 545 aa18.34■□□□□ 0.53
SCAF4-205ENST00000472318 REM2Q8IYK8 340 aaPredicted RBP18.32■□□□□ 0.52
SCAF4-205ENST00000472318 CHRDL2Q6WN34 429 aa18.29■□□□□ 0.52
SCAF4-205ENST00000472318 SSUH2Q9Y2M2 353 aa18.23■□□□□ 0.51
SCAF4-205ENST00000472318 ZNF692Q9BU19 519 aaPredicted RBP18.2■□□□□ 0.5
SCAF4-205ENST00000472318 PITPNM1O00562 1244 aa18.14■□□□□ 0.49
SCAF4-205ENST00000472318 SPDYE1Q8NFV5 336 aaPredicted RBP17.97■□□□□ 0.47
SCAF4-205ENST00000472318 PABPN1Q86U42 306 aaKnown RBP eCLIP17.95■□□□□ 0.46
SCAF4-205ENST00000472318 PIP4P2Q8N4L2 257 aa17.94■□□□□ 0.46
SCAF4-205ENST00000472318 FXR2P51116 673 aaKnown RBP eCLIP17.91■□□□□ 0.46
SCAF4-205ENST00000472318 CLEC11AQ9Y240 323 aa17.86■□□□□ 0.45
SCAF4-205ENST00000472318 SPDYE4A6NLX3 237 aa17.85■□□□□ 0.45
SCAF4-205ENST00000472318 PRR29P0C7W0 189 aa17.64■□□□□ 0.41
SCAF4-205ENST00000472318 PRKAR2AP13861 404 aaKnown RBP17.64■□□□□ 0.41
SCAF4-205ENST00000472318 PROM2Q8N271 834 aa17.57■□□□□ 0.4
SCAF4-205ENST00000472318 STAG3Q9UJ98 1225 aa17.56■□□□□ 0.4
SCAF4-205ENST00000472318 CHADLQ6NUI6 762 aa17.51■□□□□ 0.39
SCAF4-205ENST00000472318 HAX1O00165 279 aa17.46■□□□□ 0.39
SCAF4-205ENST00000472318 SP7Q8TDD2 431 aaPredicted RBP17.38■□□□□ 0.37
SCAF4-205ENST00000472318 FKBP8Q14318 412 aa17.34■□□□□ 0.37
SCAF4-205ENST00000472318 CREBZFQ9NS37 354 aa17.34■□□□□ 0.37
SCAF4-205ENST00000472318 C19orf67A6NJJ6 358 aa17.32■□□□□ 0.36
SCAF4-205ENST00000472318 FARP1Q9Y4F1 1045 aaPredicted RBP17.32■□□□□ 0.36
SCAF4-205ENST00000472318 EVX2Q03828 476 aa17.3■□□□□ 0.36
SCAF4-205ENST00000472318 MNX1P50219 401 aaPredicted RBP17.12■□□□□ 0.33
SCAF4-205ENST00000472318 CD44P16070 742 aaKnown RBP17.11■□□□□ 0.33
SCAF4-205ENST00000472318 NPM1P06748 294 aaKnown RBP eCLIP17.01■□□□□ 0.31
SCAF4-205ENST00000472318 MIER1Q8N108 512 aa16.95■□□□□ 0.3
SCAF4-205ENST00000472318 GABBR2O75899 941 aa16.94■□□□□ 0.3
SCAF4-205ENST00000472318 PLEKHG5O94827 1062 aa16.92■□□□□ 0.3
SCAF4-205ENST00000472318 NISCHQ9Y2I1 1504 aa16.91■□□□□ 0.3
SCAF4-205ENST00000472318 ZNF579Q8NAF0 562 aaKnown RBP16.91■□□□□ 0.3
SCAF4-205ENST00000472318 ZRANB1Q9UGI0 708 aa16.91■□□□□ 0.3
SCAF4-205ENST00000472318 FBXO3Q9UK99 471 aa16.89■□□□□ 0.29
SCAF4-205ENST00000472318 PLCD3Q8N3E9 789 aa16.87■□□□□ 0.29
SCAF4-205ENST00000472318 PAK3O75914 559 aaPredicted RBP16.86■□□□□ 0.29
SCAF4-205ENST00000472318 CLCN6P51797 869 aa16.85■□□□□ 0.29
SCAF4-205ENST00000472318 ZBTB47Q9UFB7 747 aaPredicted RBP16.77■□□□□ 0.28
SCAF4-205ENST00000472318 PHF12Q96QT6 1004 aa16.72■□□□□ 0.27
SCAF4-205ENST00000472318 VASPP50552 380 aaPredicted RBP16.69■□□□□ 0.26
SCAF4-205ENST00000472318 RASEFQ8IZ41 740 aa16.69■□□□□ 0.26
SCAF4-205ENST00000472318 TSPYL2Q9H2G4 693 aaPredicted RBP16.68■□□□□ 0.26
SCAF4-205ENST00000472318 CCDC61Q9Y6R9 512 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms