RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 AEBP2Q6ZN18 517 aaPredicted RBP13.65□□□□□ -0.22
UBXN4-207ENST00000471246 CHIC1Q5VXU3 224 aa12.64□□□□□ -0.39
UBXN4-207ENST00000471246 SENP3Q9H4L4 574 aaPredicted RBP11.65□□□□□ -0.54
UBXN4-207ENST00000471246 PHF23Q9BUL5 403 aaPredicted RBP11.45□□□□□ -0.58
UBXN4-207ENST00000471246 POTEDQ86YR6 584 aa11.41□□□□□ -0.58
UBXN4-207ENST00000471246 FOXD1Q16676 465 aa11□□□□□ -0.65
UBXN4-207ENST00000471246 MSH5O43196 834 aa10.47□□□□□ -0.73
UBXN4-207ENST00000471246 PIAS4Q8N2W9 510 aaPredicted RBP10.08□□□□□ -0.8
UBXN4-207ENST00000471246 PPP6R1Q9UPN7 881 aa9.82□□□□□ -0.84
UBXN4-207ENST00000471246 ADRA2BP18089 450 aa9.73□□□□□ -0.85
UBXN4-207ENST00000471246 PLPPR3Q6T4P5 718 aa9.47□□□□□ -0.89
UBXN4-207ENST00000471246 CACNB1Q02641 598 aaPredicted RBP9.41□□□□□ -0.9
UBXN4-207ENST00000471246 DMRT2Q9Y5R5 561 aa9.16□□□□□ -0.94
UBXN4-207ENST00000471246 MAPK8IP2Q13387 824 aaPredicted RBP9.15□□□□□ -0.94
UBXN4-207ENST00000471246 RNF39Q9H2S5 420 aa8.92□□□□□ -0.98
UBXN4-207ENST00000471246 DCAF8L1A6NGE4 600 aa8.8□□□□□ -1
UBXN4-207ENST00000471246 SCAF1Q9H7N4 1312 aaKnown RBP8.8□□□□□ -1
UBXN4-207ENST00000471246 POTEHQ6S545 545 aa8.79□□□□□ -1
UBXN4-207ENST00000471246 C1QBPQ07021 282 aaKnown RBP8.71□□□□□ -1.02
UBXN4-207ENST00000471246 HOXD11P31277 338 aaPredicted RBP8.57□□□□□ -1.04
UBXN4-207ENST00000471246 DNAJC5BQ9UF47 199 aa8.36□□□□□ -1.07
UBXN4-207ENST00000471246 RNF216Q9NWF9 866 aaPredicted RBP8.31□□□□□ -1.08
UBXN4-207ENST00000471246 PPP4R3CPQ6ZMV5 832 aa8.25□□□□□ -1.09
UBXN4-207ENST00000471246 CNKSR2Q8WXI2 1034 aa8.22□□□□□ -1.09
UBXN4-207ENST00000471246 DSG3P32926 999 aa8.14□□□□□ -1.11
UBXN4-207ENST00000471246 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.14□□□□□ -1.115e-8■■■□□ 19.1
UBXN4-207ENST00000471246 SPINK5Q9NQ38 1064 aaPredicted RBP8.03□□□□□ -1.12
UBXN4-207ENST00000471246 CAPN15O75808 1086 aa8□□□□□ -1.13
UBXN4-207ENST00000471246 U3KPZ7 1027 aaPredicted RBP7.94□□□□□ -1.14
UBXN4-207ENST00000471246 SP7Q8TDD2 431 aaPredicted RBP7.92□□□□□ -1.14
UBXN4-207ENST00000471246 CHRDL2Q6WN34 429 aa7.85□□□□□ -1.15
UBXN4-207ENST00000471246 ABCB7O75027 752 aa7.8□□□□□ -1.16
UBXN4-207ENST00000471246 TRHP20396 242 aaPredicted RBP7.73□□□□□ -1.17
UBXN4-207ENST00000471246 RBM42Q9BTD8 480 aaKnown RBP7.71□□□□□ -1.18
UBXN4-207ENST00000471246 NCBP3Q53F19 620 aaKnown RBP7.67□□□□□ -1.18
UBXN4-207ENST00000471246 ZNF219Q9P2Y4 722 aaPredicted RBP7.64□□□□□ -1.19
UBXN4-207ENST00000471246 NPM3O75607 178 aaKnown RBP7.63□□□□□ -1.19
UBXN4-207ENST00000471246 HAX1O00165 279 aa7.56□□□□□ -1.2
UBXN4-207ENST00000471246 PIP4P2Q8N4L2 257 aa7.55□□□□□ -1.2
UBXN4-207ENST00000471246 APLP2Q06481 763 aa7.53□□□□□ -1.2
UBXN4-207ENST00000471246 EVX2Q03828 476 aa7.5□□□□□ -1.21
UBXN4-207ENST00000471246 PLSCR2Q9NRY7 297 aa7.5□□□□□ -1.21
UBXN4-207ENST00000471246 SLC4A2P04920 1241 aa7.48□□□□□ -1.21
UBXN4-207ENST00000471246 AKT1S1Q96B36 256 aa7.43□□□□□ -1.22
UBXN4-207ENST00000471246 LHX8Q68G74 356 aa7.42□□□□□ -1.22
UBXN4-207ENST00000471246 FXR2P51116 673 aaKnown RBP eCLIP7.39□□□□□ -1.231e-17■■■□□ 15
UBXN4-207ENST00000471246 REM2Q8IYK8 340 aaPredicted RBP7.39□□□□□ -1.23
UBXN4-207ENST00000471246 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.38□□□□□ -1.23
UBXN4-207ENST00000471246 HNRNPUL2Q1KMD3 747 aaKnown RBP7.38□□□□□ -1.23
UBXN4-207ENST00000471246 POLA2Q14181 598 aa7.37□□□□□ -1.23
UBXN4-207ENST00000471246 SAMD1Q6SPF0 538 aaPredicted RBP7.33□□□□□ -1.24
UBXN4-207ENST00000471246 PITPNM1O00562 1244 aa7.32□□□□□ -1.24
UBXN4-207ENST00000471246 GABBR2O75899 941 aa7.24□□□□□ -1.25
UBXN4-207ENST00000471246 C19orf67A6NJJ6 358 aa7.18□□□□□ -1.26
UBXN4-207ENST00000471246 OSCARQ8IYS5 282 aa7.17□□□□□ -1.26
UBXN4-207ENST00000471246 POTEIP0CG38 1075 aa7.13□□□□□ -1.27
UBXN4-207ENST00000471246 PRKAR2AP13861 404 aaKnown RBP7.12□□□□□ -1.27
UBXN4-207ENST00000471246 ZBTB12Q9Y330 459 aaPredicted RBP7.09□□□□□ -1.27
UBXN4-207ENST00000471246 POTEMA6NI47 508 aa7.03□□□□□ -1.28
UBXN4-207ENST00000471246 MYCNP04198 464 aaPredicted RBP7.03□□□□□ -1.28
UBXN4-207ENST00000471246 ATF5Q9Y2D1 282 aaPredicted RBP7.01□□□□□ -1.29
UBXN4-207ENST00000471246 POTEGQ6S5H5 508 aa6.99□□□□□ -1.29
UBXN4-207ENST00000471246 OTUD5Q96G74 571 aa6.96□□□□□ -1.3
UBXN4-207ENST00000471246 CLEC11AQ9Y240 323 aa6.95□□□□□ -1.3
UBXN4-207ENST00000471246 CHADLQ6NUI6 762 aa6.93□□□□□ -1.3
UBXN4-207ENST00000471246 KCNA4P22459 653 aa6.91□□□□□ -1.3
UBXN4-207ENST00000471246 SPDYE1Q8NFV5 336 aaPredicted RBP6.9□□□□□ -1.3
UBXN4-207ENST00000471246 PCDH10Q9P2E7 1040 aa6.9□□□□□ -1.3
UBXN4-207ENST00000471246 POTEB2H3BUK9 544 aa6.88□□□□□ -1.31
UBXN4-207ENST00000471246 SPDYE2BA6NHP3 402 aa6.87□□□□□ -1.31
UBXN4-207ENST00000471246 SPDYE6P0CI01 402 aa6.87□□□□□ -1.31
UBXN4-207ENST00000471246 SPDYE2Q495Y8 402 aa6.87□□□□□ -1.31
UBXN4-207ENST00000471246 DCBLD2Q96PD2 775 aa6.86□□□□□ -1.31
UBXN4-207ENST00000471246 CD44P16070 742 aaKnown RBP6.84□□□□□ -1.31
UBXN4-207ENST00000471246 CLCN6P51797 869 aa6.81□□□□□ -1.32
UBXN4-207ENST00000471246 LCE2DQ5TA82 110 aaPredicted RBP6.77□□□□□ -1.33
UBXN4-207ENST00000471246 SSUH2Q9Y2M2 353 aa6.73□□□□□ -1.33
UBXN4-207ENST00000471246 PRR29P0C7W0 189 aa6.72□□□□□ -1.33
UBXN4-207ENST00000471246 FARP1Q9Y4F1 1045 aaPredicted RBP6.72□□□□□ -1.33
UBXN4-207ENST00000471246 ZNF579Q8NAF0 562 aaKnown RBP6.71□□□□□ -1.34
UBXN4-207ENST00000471246 GALR2O43603 387 aaPredicted RBP6.7□□□□□ -1.34
UBXN4-207ENST00000471246 ZNF692Q9BU19 519 aaPredicted RBP6.69□□□□□ -1.34
UBXN4-207ENST00000471246 POTEJP0CG39 1038 aa6.68□□□□□ -1.34
UBXN4-207ENST00000471246 FBLN2P98095 1184 aa6.67□□□□□ -1.34
UBXN4-207ENST00000471246 FAM163AQ96GL9 167 aaPredicted RBP6.67□□□□□ -1.34
UBXN4-207ENST00000471246 PELP1Q8IZL8 1130 aaKnown RBP6.66□□□□□ -1.34
UBXN4-207ENST00000471246 ZRANB1Q9UGI0 708 aa6.64□□□□□ -1.35
UBXN4-207ENST00000471246 MKRN4PQ13434 485 aaPredicted RBP6.63□□□□□ -1.35
UBXN4-207ENST00000471246 FOXD4L1Q9NU39 408 aa6.61□□□□□ -1.35
UBXN4-207ENST00000471246 CDAN1Q8IWY9 1227 aa6.59□□□□□ -1.35
UBXN4-207ENST00000471246 PABPN1Q86U42 306 aaKnown RBP eCLIP6.58□□□□□ -1.36
UBXN4-207ENST00000471246 METRNQ9UJH8 293 aa6.56□□□□□ -1.36
UBXN4-207ENST00000471246 MAMSTRQ6ZN01 415 aa6.55□□□□□ -1.36
UBXN4-207ENST00000471246 PHF12Q96QT6 1004 aa6.53□□□□□ -1.36
UBXN4-207ENST00000471246 MMRN1Q13201 1228 aa6.51□□□□□ -1.37
UBXN4-207ENST00000471246 C7P10643 843 aa6.5□□□□□ -1.37
UBXN4-207ENST00000471246 ASTLQ6HA08 431 aaPredicted RBP6.5□□□□□ -1.37
UBXN4-207ENST00000471246 SLC39A7Q92504 469 aa6.5□□□□□ -1.37
UBXN4-207ENST00000471246 SCUBE2Q9NQ36 999 aa6.49□□□□□ -1.37
UBXN4-207ENST00000471246 ATMINO43313 823 aaPredicted RBP6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms