RNA–Protein interactions for RNA: ENST00000470985.3

LDHB-206, Transcript of lactate dehydrogenase B, humanhuman

TSL 1 (best)

Gene LDHB, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHB-206ENST00000470985 AEBP2Q6ZN18 517 aaPredicted RBP28.72■■■□□ 2.19
LDHB-206ENST00000470985 CHIC1Q5VXU3 224 aa27.69■■■□□ 2.02
LDHB-206ENST00000470985 SENP3Q9H4L4 574 aaPredicted RBP24.73■■□□□ 1.55
LDHB-206ENST00000470985 PHF23Q9BUL5 403 aaPredicted RBP24.38■■□□□ 1.49
LDHB-206ENST00000470985 FOXD1Q16676 465 aa22.85■■□□□ 1.25
LDHB-206ENST00000470985 PLPPR3Q6T4P5 718 aa22.38■■□□□ 1.17
LDHB-206ENST00000470985 PIAS4Q8N2W9 510 aaPredicted RBP21.56■■□□□ 1.04
LDHB-206ENST00000470985 ADRA2BP18089 450 aa21.55■■□□□ 1.04
LDHB-206ENST00000470985 PPP6R1Q9UPN7 881 aa21.52■■□□□ 1.04
LDHB-206ENST00000470985 MSH5O43196 834 aa21.48■■□□□ 1.03
LDHB-206ENST00000470985 POTEDQ86YR6 584 aa20.32■□□□□ 0.84
LDHB-206ENST00000470985 SCAF1Q9H7N4 1312 aaKnown RBP20.02■□□□□ 0.79
LDHB-206ENST00000470985 MAPK8IP2Q13387 824 aaPredicted RBP19.67■□□□□ 0.74
LDHB-206ENST00000470985 PPP4R3CPQ6ZMV5 832 aa19.59■□□□□ 0.73
LDHB-206ENST00000470985 DMRT2Q9Y5R5 561 aa19.57■□□□□ 0.72
LDHB-206ENST00000470985 CNKSR2Q8WXI2 1034 aa19.21■□□□□ 0.67
LDHB-206ENST00000470985 NCBP3Q53F19 620 aaKnown RBP19.12■□□□□ 0.65
LDHB-206ENST00000470985 DCAF8L1A6NGE4 600 aa18.94■□□□□ 0.62
LDHB-206ENST00000470985 RNF216Q9NWF9 866 aaPredicted RBP18.94■□□□□ 0.62
LDHB-206ENST00000470985 HOXD11P31277 338 aaPredicted RBP18.93■□□□□ 0.62
LDHB-206ENST00000470985 NPM3O75607 178 aaKnown RBP18.59■□□□□ 0.57
LDHB-206ENST00000470985 KCNA4P22459 653 aa18.46■□□□□ 0.55
LDHB-206ENST00000470985 NISCHQ9Y2I1 1504 aa18.41■□□□□ 0.54
LDHB-206ENST00000470985 DNAJC5BQ9UF47 199 aa18.3■□□□□ 0.52
LDHB-206ENST00000470985 CACNB1Q02641 598 aaPredicted RBP18.28■□□□□ 0.52
LDHB-206ENST00000470985 ABCC9O60706 1549 aa18.23■□□□□ 0.51
LDHB-206ENST00000470985 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.23■□□□□ 0.515e-11■■□□□ 13.9
LDHB-206ENST00000470985 RNF39Q9H2S5 420 aa18.22■□□□□ 0.51
LDHB-206ENST00000470985 C1QBPQ07021 282 aaKnown RBP18.1■□□□□ 0.49
LDHB-206ENST00000470985 U3KPZ7 1027 aaPredicted RBP17.66■□□□□ 0.42
LDHB-206ENST00000470985 SLC4A1APQ9BWU0 796 aaKnown RBP17.61■□□□□ 0.41
LDHB-206ENST00000470985 SLC4A2P04920 1241 aa17.6■□□□□ 0.41
LDHB-206ENST00000470985 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.56■□□□□ 0.4
LDHB-206ENST00000470985 APLP2Q06481 763 aa17.56■□□□□ 0.4
LDHB-206ENST00000470985 HNRNPUL2Q1KMD3 747 aaKnown RBP17.56■□□□□ 0.4
LDHB-206ENST00000470985 CAPN15O75808 1086 aa17.48■□□□□ 0.39
LDHB-206ENST00000470985 DNAJC5Q9H3Z4 198 aa17.45■□□□□ 0.38
LDHB-206ENST00000470985 SAMD1Q6SPF0 538 aaPredicted RBP17.4■□□□□ 0.38
LDHB-206ENST00000470985 SPINK5Q9NQ38 1064 aaPredicted RBP17.33■□□□□ 0.36
LDHB-206ENST00000470985 MYCNP04198 464 aaPredicted RBP17.3■□□□□ 0.36
LDHB-206ENST00000470985 ZNF219Q9P2Y4 722 aaPredicted RBP17.25■□□□□ 0.35
LDHB-206ENST00000470985 TRHP20396 242 aaPredicted RBP17.24■□□□□ 0.35
LDHB-206ENST00000470985 FOXD4L1Q9NU39 408 aa17.24■□□□□ 0.35
LDHB-206ENST00000470985 DSG3P32926 999 aa17.15■□□□□ 0.34
LDHB-206ENST00000470985 ABCB7O75027 752 aa16.99■□□□□ 0.31
LDHB-206ENST00000470985 CCDC180Q9P1Z9 1646 aa16.96■□□□□ 0.3
LDHB-206ENST00000470985 ZBTB22O15209 634 aa16.84■□□□□ 0.29
LDHB-206ENST00000470985 POLA2Q14181 598 aa16.82■□□□□ 0.28
LDHB-206ENST00000470985 PABPN1Q86U42 306 aaKnown RBP eCLIP16.8■□□□□ 0.28
LDHB-206ENST00000470985 ATXN8OSP0DMR3 200 aa16.74■□□□□ 0.27
LDHB-206ENST00000470985 RB1CC1Q8TDY2 1594 aa16.72■□□□□ 0.27
LDHB-206ENST00000470985 ATF5Q9Y2D1 282 aaPredicted RBP16.67■□□□□ 0.26
LDHB-206ENST00000470985 ZBTB12Q9Y330 459 aaPredicted RBP16.62■□□□□ 0.25
LDHB-206ENST00000470985 RBM42Q9BTD8 480 aaKnown RBP16.56■□□□□ 0.24
LDHB-206ENST00000470985 CECR2Q9BXF3 1484 aa16.52■□□□□ 0.23
LDHB-206ENST00000470985 EHMT2Q96KQ7 1210 aa16.48■□□□□ 0.23
LDHB-206ENST00000470985 CSRNP3Q8WYN3 585 aa16.42■□□□□ 0.22
LDHB-206ENST00000470985 BICRAQ9NZM4 1560 aa16.38■□□□□ 0.21
LDHB-206ENST00000470985 CC2D2AQ9P2K1 1620 aa16.37■□□□□ 0.21
LDHB-206ENST00000470985 UNC13AQ9UPW8 1703 aa16.36■□□□□ 0.21
LDHB-206ENST00000470985 FBLN2P98095 1184 aa16.34■□□□□ 0.21
LDHB-206ENST00000470985 NACADO15069 1562 aa16.32■□□□□ 0.2
LDHB-206ENST00000470985 TRIM41Q8WV44 630 aa16.26■□□□□ 0.19
LDHB-206ENST00000470985 OSCARQ8IYS5 282 aa16.18■□□□□ 0.18
LDHB-206ENST00000470985 AKT1S1Q96B36 256 aa16.16■□□□□ 0.18
LDHB-206ENST00000470985 CUX2O14529 1486 aa16.1■□□□□ 0.17
LDHB-206ENST00000470985 POTEHQ6S545 545 aa16.05■□□□□ 0.16
LDHB-206ENST00000470985 EIF4G1Q04637 1599 aaKnown RBP16.04■□□□□ 0.16
LDHB-206ENST00000470985 DCAF8L2P0C7V8 631 aa16.04■□□□□ 0.16
LDHB-206ENST00000470985 SPDYE2BA6NHP3 402 aa16.03■□□□□ 0.16
LDHB-206ENST00000470985 SPDYE6P0CI01 402 aa16.03■□□□□ 0.16
LDHB-206ENST00000470985 SPDYE2Q495Y8 402 aa16.03■□□□□ 0.16
LDHB-206ENST00000470985 CHRDL2Q6WN34 429 aa15.97■□□□□ 0.15
LDHB-206ENST00000470985 REM2Q8IYK8 340 aaPredicted RBP15.95■□□□□ 0.14
LDHB-206ENST00000470985 MKRN4PQ13434 485 aaPredicted RBP15.93■□□□□ 0.14
LDHB-206ENST00000470985 ZNF692Q9BU19 519 aaPredicted RBP15.93■□□□□ 0.14
LDHB-206ENST00000470985 SHROOM4Q9ULL8 1493 aa15.91■□□□□ 0.14
LDHB-206ENST00000470985 ERCC6Q03468 1493 aa15.77■□□□□ 0.11
LDHB-206ENST00000470985 SPDYE1Q8NFV5 336 aaPredicted RBP15.74■□□□□ 0.11
LDHB-206ENST00000470985 PITPNM1O00562 1244 aa15.73■□□□□ 0.11
LDHB-206ENST00000470985 SSUH2Q9Y2M2 353 aa15.72■□□□□ 0.11
LDHB-206ENST00000470985 CLEC11AQ9Y240 323 aa15.7■□□□□ 0.1
LDHB-206ENST00000470985 MYO15BQ96JP2 1530 aa15.68■□□□□ 0.1
LDHB-206ENST00000470985 PIP4P2Q8N4L2 257 aa15.59■□□□□ 0.09
LDHB-206ENST00000470985 FXR2P51116 673 aaKnown RBP eCLIP15.54■□□□□ 0.08
LDHB-206ENST00000470985 SPDYE4A6NLX3 237 aa15.52■□□□□ 0.08
LDHB-206ENST00000470985 SCRIBQ14160 1630 aa15.5■□□□□ 0.07
LDHB-206ENST00000470985 PRR29P0C7W0 189 aa15.5■□□□□ 0.07
LDHB-206ENST00000470985 PRKAR2AP13861 404 aaKnown RBP15.41■□□□□ 0.06
LDHB-206ENST00000470985 STAG3Q9UJ98 1225 aa15.41■□□□□ 0.06
LDHB-206ENST00000470985 HAX1O00165 279 aa15.4■□□□□ 0.06
LDHB-206ENST00000470985 THOC2Q8NI27 1593 aaKnown RBP15.4■□□□□ 0.06
LDHB-206ENST00000470985 NESP48681 1621 aa15.35■□□□□ 0.05
LDHB-206ENST00000470985 CHADLQ6NUI6 762 aa15.21■□□□□ 0.03
LDHB-206ENST00000470985 SMARCA2P51531 1590 aa15.2■□□□□ 0.02
LDHB-206ENST00000470985 ILDR1Q86SU0 546 aaPredicted RBP15.19■□□□□ 0.02
LDHB-206ENST00000470985 SP7Q8TDD2 431 aaPredicted RBP15.19■□□□□ 0.02
LDHB-206ENST00000470985 BAZ1AQ9NRL2 1556 aaPredicted RBP15.19■□□□□ 0.02
LDHB-206ENST00000470985 RIMBP3CA6NJZ7 1639 aa15.16■□□□□ 0.02
LDHB-206ENST00000470985 RIMBP3BA6NNM3 1639 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms