RNA–Protein interactions for RNA: ENST00000469358.5

VARS2-205, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 5

Gene VARS2, Length 3,429 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-205ENST00000469358 NISCHQ9Y2I1 1504 aa24.2■■□□□ 1.47
VARS2-205ENST00000469358 SHROOM4Q9ULL8 1493 aa21.34■■□□□ 1.01
VARS2-205ENST00000469358 SUPT5HO00267 1087 aaKnown RBP21.02■□□□□ 0.96
VARS2-205ENST00000469358 DCAF8L2P0C7V8 631 aa20.58■□□□□ 0.88
VARS2-205ENST00000469358 ZCCHC6Q5VYS8 1495 aaKnown RBP20.48■□□□□ 0.87
VARS2-205ENST00000469358 MYO15BQ96JP2 1530 aa20.39■□□□□ 0.85
VARS2-205ENST00000469358 CHIC1Q5VXU3 224 aa20.35■□□□□ 0.85
VARS2-205ENST00000469358 CCDC180Q9P1Z9 1646 aa20.19■□□□□ 0.82
VARS2-205ENST00000469358 PCGF6Q9BYE7 350 aa20.14■□□□□ 0.82
VARS2-205ENST00000469358 HRCP23327 699 aa20.11■□□□□ 0.81
VARS2-205ENST00000469358 LOC105371045A0A1W2PR82 267 aa19.98■□□□□ 0.79
VARS2-205ENST00000469358 PPARGC1BQ86YN6 1023 aaKnown RBP19.98■□□□□ 0.79
VARS2-205ENST00000469358 DCAF1Q9Y4B6 1507 aa19.6■□□□□ 0.73
VARS2-205ENST00000469358 EHMT2Q96KQ7 1210 aa19.54■□□□□ 0.72
VARS2-205ENST00000469358 FAM9AQ8IZU1 332 aaPredicted RBP19.5■□□□□ 0.71
VARS2-205ENST00000469358 TRIM26Q12899 539 aaPredicted RBP19.45■□□□□ 0.7
VARS2-205ENST00000469358 SCRIBQ14160 1630 aa19.38■□□□□ 0.69
VARS2-205ENST00000469358 TRIM41Q8WV44 630 aa19.38■□□□□ 0.69
VARS2-205ENST00000469358 RSF1Q96T23 1441 aaPredicted RBP19.37■□□□□ 0.69
VARS2-205ENST00000469358 ABCC9O60706 1549 aa19.35■□□□□ 0.69
VARS2-205ENST00000469358 RB1CC1Q8TDY2 1594 aa19.23■□□□□ 0.67
VARS2-205ENST00000469358 CECR2Q9BXF3 1484 aa19.09■□□□□ 0.65
VARS2-205ENST00000469358 ZEB1P37275 1124 aaPredicted RBP18.97■□□□□ 0.63
VARS2-205ENST00000469358 MROH2BQ7Z745 1585 aa18.96■□□□□ 0.63
VARS2-205ENST00000469358 TTBK1Q5TCY1 1321 aaPredicted RBP18.92■□□□□ 0.62
VARS2-205ENST00000469358 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.88■□□□□ 0.61
VARS2-205ENST00000469358 WIZO95785 1651 aa18.87■□□□□ 0.61
VARS2-205ENST00000469358 SCAF1Q9H7N4 1312 aaKnown RBP18.82■□□□□ 0.6
VARS2-205ENST00000469358 CCER1Q8TC90 406 aaPredicted RBP18.74■□□□□ 0.59
VARS2-205ENST00000469358 NACADO15069 1562 aa18.71■□□□□ 0.59
VARS2-205ENST00000469358 ABCC8Q09428 1581 aa18.64■□□□□ 0.57
VARS2-205ENST00000469358 CCDC88BA6NC98 1476 aa18.6■□□□□ 0.57
VARS2-205ENST00000469358 BAZ1AQ9NRL2 1556 aaPredicted RBP18.58■□□□□ 0.56
VARS2-205ENST00000469358 SOGA1O94964 1423 aa18.54■□□□□ 0.56
VARS2-205ENST00000469358 EIF4G1Q04637 1599 aaKnown RBP18.53■□□□□ 0.56
VARS2-205ENST00000469358 NEUROD1Q13562 356 aa18.52■□□□□ 0.56
VARS2-205ENST00000469358 UBTFP17480 764 aaKnown RBP18.49■□□□□ 0.55
VARS2-205ENST00000469358 RUSC2Q8N2Y8 1516 aa18.48■□□□□ 0.55
VARS2-205ENST00000469358 CEP162Q5TB80 1403 aa18.47■□□□□ 0.55
VARS2-205ENST00000469358 DIEXFQ68CQ4 756 aaKnown RBP18.47■□□□□ 0.55
VARS2-205ENST00000469358 ACIN1Q9UKV3 1341 aaKnown RBP18.43■□□□□ 0.54
VARS2-205ENST00000469358 PABPN1Q86U42 306 aaKnown RBP eCLIP18.43■□□□□ 0.542e-7■■■■□ 25.5
VARS2-205ENST00000469358 TOP2AP11388 1531 aaKnown RBP18.4■□□□□ 0.54
VARS2-205ENST00000469358 CSRNP3Q8WYN3 585 aa18.39■□□□□ 0.53
VARS2-205ENST00000469358 SMARCA2P51531 1590 aa18.38■□□□□ 0.53
VARS2-205ENST00000469358 SMARCA4P51532 1647 aa18.36■□□□□ 0.53
VARS2-205ENST00000469358 RANGAP1P46060 587 aaPredicted RBP18.35■□□□□ 0.53
VARS2-205ENST00000469358 GTF3C3Q9Y5Q9 886 aa18.35■□□□□ 0.53
VARS2-205ENST00000469358 WRNQ14191 1432 aaPredicted RBP eCLIP18.33■□□□□ 0.52
VARS2-205ENST00000469358 TNIKQ9UKE5 1360 aa18.32■□□□□ 0.52
VARS2-205ENST00000469358 HNRNPUL2Q1KMD3 747 aaKnown RBP18.32■□□□□ 0.52
VARS2-205ENST00000469358 PELP1Q8IZL8 1130 aaKnown RBP18.31■□□□□ 0.52
VARS2-205ENST00000469358 YTHDC1Q96MU7 727 aaKnown RBP18.28■□□□□ 0.52
VARS2-205ENST00000469358 CENPBP07199 599 aaPredicted RBP18.2■□□□□ 0.5
VARS2-205ENST00000469358 UNC13AQ9UPW8 1703 aa18.19■□□□□ 0.5
VARS2-205ENST00000469358 ZNF316A6NFI3 1004 aaPredicted RBP18.19■□□□□ 0.5
VARS2-205ENST00000469358 GOLGA3Q08378 1498 aa18.16■□□□□ 0.5
VARS2-205ENST00000469358 EEA1Q15075 1411 aa18.12■□□□□ 0.49
VARS2-205ENST00000469358 MIER1Q8N108 512 aa18.12■□□□□ 0.49
VARS2-205ENST00000469358 SYNJ1O43426 1573 aa18.08■□□□□ 0.48
VARS2-205ENST00000469358 CLIP1P30622 1438 aa18.07■□□□□ 0.48
VARS2-205ENST00000469358 APLP2Q06481 763 aa18.02■□□□□ 0.47
VARS2-205ENST00000469358 BICRAQ9NZM4 1560 aa18.02■□□□□ 0.47
VARS2-205ENST00000469358 RAPGEF2Q9Y4G8 1499 aa18.01■□□□□ 0.47
VARS2-205ENST00000469358 CEP164Q9UPV0 1460 aa18.01■□□□□ 0.47
VARS2-205ENST00000469358 VPS8Q8N3P4 1428 aa17.95■□□□□ 0.46
VARS2-205ENST00000469358 ATAD2BQ9ULI0 1458 aa17.9■□□□□ 0.46
VARS2-205ENST00000469358 KIF21BO75037 1637 aa17.89■□□□□ 0.45
VARS2-205ENST00000469358 BAZ1BQ9UIG0 1483 aaKnown RBP17.88■□□□□ 0.45
VARS2-205ENST00000469358 KANK4Q5T7N3 995 aaPredicted RBP17.88■□□□□ 0.45
VARS2-205ENST00000469358 PEG3Q9GZU2 1588 aa17.83■□□□□ 0.45
VARS2-205ENST00000469358 ITGAEP38570 1179 aa17.82■□□□□ 0.44
VARS2-205ENST00000469358 DHX57Q6P158 1386 aaKnown RBP17.75■□□□□ 0.43
VARS2-205ENST00000469358 ARAP1Q96P48 1450 aa17.71■□□□□ 0.43
VARS2-205ENST00000469358 TOP2BQ02880 1626 aa17.69■□□□□ 0.42
VARS2-205ENST00000469358 PRXQ9BXM0 1461 aa17.65■□□□□ 0.42
VARS2-205ENST00000469358 KCNH8Q96L42 1107 aa17.62■□□□□ 0.41
VARS2-205ENST00000469358 CUX1P39880 1505 aa17.6■□□□□ 0.41
VARS2-205ENST00000469358 BIVM-ERCC5R4GMW8 1640 aa17.55■□□□□ 0.4
VARS2-205ENST00000469358 SUPT16HQ9Y5B9 1047 aaKnown RBP17.55■□□□□ 0.4
VARS2-205ENST00000469358 ERICH3Q5RHP9 1530 aa17.54■□□□□ 0.4
VARS2-205ENST00000469358 KIF27Q86VH2 1401 aa17.54■□□□□ 0.4
VARS2-205ENST00000469358 CCNB3Q8WWL7 1395 aa17.54■□□□□ 0.4
VARS2-205ENST00000469358 CLSPNQ9HAW4 1339 aa17.53■□□□□ 0.4
VARS2-205ENST00000469358 ARHGAP35Q9NRY4 1499 aa17.53■□□□□ 0.4
VARS2-205ENST00000469358 P3H3Q8IVL6 736 aa17.53■□□□□ 0.4
VARS2-205ENST00000469358 RRBP1Q9P2E9 1410 aaKnown RBP17.52■□□□□ 0.4
VARS2-205ENST00000469358 ATP1B4Q9UN42 357 aaPredicted RBP17.52■□□□□ 0.39
VARS2-205ENST00000469358 SIN3AQ96ST3 1273 aa17.49■□□□□ 0.39
VARS2-205ENST00000469358 HIRIP3Q9BW71 556 aaPredicted RBP17.49■□□□□ 0.39
VARS2-205ENST00000469358 RAB3GAP2Q9H2M9 1393 aa17.48■□□□□ 0.39
VARS2-205ENST00000469358 FAM50AQ14320 339 aaKnown RBP17.46■□□□□ 0.39
VARS2-205ENST00000469358 BCANQ96GW7 911 aa17.43■□□□□ 0.38
VARS2-205ENST00000469358 CUX2O14529 1486 aa17.43■□□□□ 0.38
VARS2-205ENST00000469358 DDX10Q13206 875 aaKnown RBP17.43■□□□□ 0.38
VARS2-205ENST00000469358 NCAPD3P42695 1498 aa17.42■□□□□ 0.38
VARS2-205ENST00000469358 IGF1RP08069 1367 aa17.41■□□□□ 0.38
VARS2-205ENST00000469358 CFTRP13569 1480 aa17.39■□□□□ 0.37
VARS2-205ENST00000469358 PHLDB1Q86UU1 1377 aa17.38■□□□□ 0.37
VARS2-205ENST00000469358 MAPKBP1O60336 1514 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms