RNA–Protein interactions for RNA: ENST00000468872.5

LSM5-209, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 636 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-209ENST00000468872 AEBP2Q6ZN18 517 aaPredicted RBP29.71■■■□□ 2.35
LSM5-209ENST00000468872 CHIC1Q5VXU3 224 aa28.59■■■□□ 2.17
LSM5-209ENST00000468872 SENP3Q9H4L4 574 aaPredicted RBP25.27■■□□□ 1.64
LSM5-209ENST00000468872 PHF23Q9BUL5 403 aaPredicted RBP25.12■■□□□ 1.61
LSM5-209ENST00000468872 FOXD1Q16676 465 aa23.51■■□□□ 1.35
LSM5-209ENST00000468872 PLPPR3Q6T4P5 718 aa23.04■■□□□ 1.28
LSM5-209ENST00000468872 PPP6R1Q9UPN7 881 aa22.3■■□□□ 1.16
LSM5-209ENST00000468872 ADRA2BP18089 450 aa22.25■■□□□ 1.15
LSM5-209ENST00000468872 PIAS4Q8N2W9 510 aaPredicted RBP22.06■■□□□ 1.12
LSM5-209ENST00000468872 MSH5O43196 834 aa21.84■■□□□ 1.09
LSM5-209ENST00000468872 POTEDQ86YR6 584 aa20.63■□□□□ 0.89
LSM5-209ENST00000468872 SCAF1Q9H7N4 1312 aaKnown RBP20.34■□□□□ 0.85
LSM5-209ENST00000468872 MAPK8IP2Q13387 824 aaPredicted RBP20.32■□□□□ 0.84
LSM5-209ENST00000468872 PPP4R3CPQ6ZMV5 832 aa20.24■□□□□ 0.83
LSM5-209ENST00000468872 DMRT2Q9Y5R5 561 aa20.11■□□□□ 0.81
LSM5-209ENST00000468872 CNKSR2Q8WXI2 1034 aa19.77■□□□□ 0.76
LSM5-209ENST00000468872 NCBP3Q53F19 620 aaKnown RBP19.58■□□□□ 0.72
LSM5-209ENST00000468872 HOXD11P31277 338 aaPredicted RBP19.52■□□□□ 0.72
LSM5-209ENST00000468872 RNF216Q9NWF9 866 aaPredicted RBP19.48■□□□□ 0.71
LSM5-209ENST00000468872 NPM3O75607 178 aaKnown RBP19.31■□□□□ 0.68
LSM5-209ENST00000468872 KCNA4P22459 653 aa19.31■□□□□ 0.68
LSM5-209ENST00000468872 DCAF8L1A6NGE4 600 aa19.25■□□□□ 0.67
LSM5-209ENST00000468872 DNAJC5BQ9UF47 199 aa18.81■□□□□ 0.6
LSM5-209ENST00000468872 RNF39Q9H2S5 420 aa18.68■□□□□ 0.58
LSM5-209ENST00000468872 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.6■□□□□ 0.573e-8■■■□□ 14.6
LSM5-209ENST00000468872 CACNB1Q02641 598 aaPredicted RBP18.49■□□□□ 0.55
LSM5-209ENST00000468872 C1QBPQ07021 282 aaKnown RBP18.42■□□□□ 0.54
LSM5-209ENST00000468872 SLC4A2P04920 1241 aa18.34■□□□□ 0.53
LSM5-209ENST00000468872 SLC4A1APQ9BWU0 796 aaKnown RBP18.3■□□□□ 0.52
LSM5-209ENST00000468872 U3KPZ7 1027 aaPredicted RBP18.26■□□□□ 0.51
LSM5-209ENST00000468872 SPINK5Q9NQ38 1064 aaPredicted RBP17.88■□□□□ 0.45
LSM5-209ENST00000468872 FOXD4L1Q9NU39 408 aa17.88■□□□□ 0.45
LSM5-209ENST00000468872 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.87■□□□□ 0.45
LSM5-209ENST00000468872 HNRNPUL2Q1KMD3 747 aaKnown RBP17.87■□□□□ 0.45
LSM5-209ENST00000468872 MYCNP04198 464 aaPredicted RBP17.84■□□□□ 0.45
LSM5-209ENST00000468872 CAPN15O75808 1086 aa17.82■□□□□ 0.44
LSM5-209ENST00000468872 SAMD1Q6SPF0 538 aaPredicted RBP17.8■□□□□ 0.44
LSM5-209ENST00000468872 APLP2Q06481 763 aa17.78■□□□□ 0.44
LSM5-209ENST00000468872 ZBTB22O15209 634 aa17.77■□□□□ 0.44
LSM5-209ENST00000468872 TRHP20396 242 aaPredicted RBP17.63■□□□□ 0.41
LSM5-209ENST00000468872 DSG3P32926 999 aa17.63■□□□□ 0.41
LSM5-209ENST00000468872 ZNF219Q9P2Y4 722 aaPredicted RBP17.61■□□□□ 0.41
LSM5-209ENST00000468872 ABCB7O75027 752 aa17.46■□□□□ 0.39
LSM5-209ENST00000468872 ATF5Q9Y2D1 282 aaPredicted RBP17.42■□□□□ 0.38
LSM5-209ENST00000468872 EHMT2Q96KQ7 1210 aa17.31■□□□□ 0.36
LSM5-209ENST00000468872 ATXN8OSP0DMR3 200 aa17.3■□□□□ 0.36
LSM5-209ENST00000468872 CSRNP3Q8WYN3 585 aa17.3■□□□□ 0.36
LSM5-209ENST00000468872 POLA2Q14181 598 aa17.26■□□□□ 0.35
LSM5-209ENST00000468872 ZBTB12Q9Y330 459 aaPredicted RBP16.94■□□□□ 0.3
LSM5-209ENST00000468872 RBM42Q9BTD8 480 aaKnown RBP16.79■□□□□ 0.28
LSM5-209ENST00000468872 OSCARQ8IYS5 282 aa16.7■□□□□ 0.26
LSM5-209ENST00000468872 FBLN2P98095 1184 aa16.69■□□□□ 0.26
LSM5-209ENST00000468872 MKRN4PQ13434 485 aaPredicted RBP16.63■□□□□ 0.25
LSM5-209ENST00000468872 AKT1S1Q96B36 256 aa16.5■□□□□ 0.23
LSM5-209ENST00000468872 SPDYE2BA6NHP3 402 aa16.45■□□□□ 0.22
LSM5-209ENST00000468872 SPDYE6P0CI01 402 aa16.45■□□□□ 0.22
LSM5-209ENST00000468872 SPDYE2Q495Y8 402 aa16.45■□□□□ 0.22
LSM5-209ENST00000468872 REM2Q8IYK8 340 aaPredicted RBP16.35■□□□□ 0.21
LSM5-209ENST00000468872 ZNF692Q9BU19 519 aaPredicted RBP16.32■□□□□ 0.2
LSM5-209ENST00000468872 CHRDL2Q6WN34 429 aa16.28■□□□□ 0.2
LSM5-209ENST00000468872 SSUH2Q9Y2M2 353 aa16.28■□□□□ 0.2
LSM5-209ENST00000468872 POTEHQ6S545 545 aa16.25■□□□□ 0.19
LSM5-209ENST00000468872 PITPNM1O00562 1244 aa16.18■□□□□ 0.18
LSM5-209ENST00000468872 PABPN1Q86U42 306 aaKnown RBP eCLIP16.09■□□□□ 0.17
LSM5-209ENST00000468872 SPDYE1Q8NFV5 336 aaPredicted RBP16.06■□□□□ 0.16
LSM5-209ENST00000468872 SPDYE4A6NLX3 237 aa16.05■□□□□ 0.16
LSM5-209ENST00000468872 CLEC11AQ9Y240 323 aa16.01■□□□□ 0.15
LSM5-209ENST00000468872 PIP4P2Q8N4L2 257 aa15.99■□□□□ 0.15
LSM5-209ENST00000468872 FXR2P51116 673 aaKnown RBP eCLIP15.96■□□□□ 0.15
LSM5-209ENST00000468872 PRR29P0C7W0 189 aa15.81■□□□□ 0.12
LSM5-209ENST00000468872 PRKAR2AP13861 404 aaKnown RBP15.76■□□□□ 0.11
LSM5-209ENST00000468872 PROM2Q8N271 834 aa15.74■□□□□ 0.11
LSM5-209ENST00000468872 STAG3Q9UJ98 1225 aa15.73■□□□□ 0.11
LSM5-209ENST00000468872 CHADLQ6NUI6 762 aa15.67■□□□□ 0.1
LSM5-209ENST00000468872 FKBP8Q14318 412 aa15.66■□□□□ 0.1
LSM5-209ENST00000468872 HAX1O00165 279 aa15.57■□□□□ 0.08
LSM5-209ENST00000468872 CREBZFQ9NS37 354 aa15.52■□□□□ 0.08
LSM5-209ENST00000468872 FARP1Q9Y4F1 1045 aaPredicted RBP15.48■□□□□ 0.07
LSM5-209ENST00000468872 C19orf67A6NJJ6 358 aa15.43■□□□□ 0.06
LSM5-209ENST00000468872 EVX2Q03828 476 aa15.43■□□□□ 0.06
LSM5-209ENST00000468872 SP7Q8TDD2 431 aaPredicted RBP15.43■□□□□ 0.06
LSM5-209ENST00000468872 MNX1P50219 401 aaPredicted RBP15.31■□□□□ 0.04
LSM5-209ENST00000468872 CD44P16070 742 aaKnown RBP15.28■□□□□ 0.04
LSM5-209ENST00000468872 MIER1Q8N108 512 aa15.26■□□□□ 0.03
LSM5-209ENST00000468872 NPM1P06748 294 aaKnown RBP eCLIP15.24■□□□□ 0.03
LSM5-209ENST00000468872 FBXO3Q9UK99 471 aa15.22■□□□□ 0.03
LSM5-209ENST00000468872 PLEKHG5O94827 1062 aa15.21■□□□□ 0.03
LSM5-209ENST00000468872 PLCD3Q8N3E9 789 aa15.19■□□□□ 0.02
LSM5-209ENST00000468872 ZRANB1Q9UGI0 708 aa15.13■□□□□ 0.01
LSM5-209ENST00000468872 GABBR2O75899 941 aa15.1■□□□□ 0.01
LSM5-209ENST00000468872 PAK3O75914 559 aaPredicted RBP15.08■□□□□ 0
LSM5-209ENST00000468872 ZNF579Q8NAF0 562 aaKnown RBP15.07■□□□□ 0
LSM5-209ENST00000468872 ZBTB47Q9UFB7 747 aaPredicted RBP15.05■□□□□ -0
LSM5-209ENST00000468872 VASPP50552 380 aaPredicted RBP15.03■□□□□ -0
LSM5-209ENST00000468872 CLCN6P51797 869 aa14.99□□□□□ -0.01
LSM5-209ENST00000468872 TSPYL2Q9H2G4 693 aaPredicted RBP14.98□□□□□ -0.01
LSM5-209ENST00000468872 RASEFQ8IZ41 740 aa14.96□□□□□ -0.01
LSM5-209ENST00000468872 PHF12Q96QT6 1004 aa14.96□□□□□ -0.01
LSM5-209ENST00000468872 NUBP1P53384 320 aa14.92□□□□□ -0.02
LSM5-209ENST00000468872 CCDC61Q9Y6R9 512 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 164.1 ms