RNA–Protein interactions for RNA: ENST00000466742.5

ABCF3-206, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 2

Gene ABCF3, Length 2,331 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-206ENST00000466742 NISCHQ9Y2I1 1504 aa32.81■■■□□ 2.84
ABCF3-206ENST00000466742 CCDC180Q9P1Z9 1646 aa28.51■■■□□ 2.16
ABCF3-206ENST00000466742 ZCCHC6Q5VYS8 1495 aaKnown RBP27.59■■■□□ 2.01
ABCF3-206ENST00000466742 DCAF1Q9Y4B6 1507 aa27.16■■□□□ 1.94
ABCF3-206ENST00000466742 DCAF8L2P0C7V8 631 aa27.03■■□□□ 1.92
ABCF3-206ENST00000466742 ABCC9O60706 1549 aa26.9■■□□□ 1.9
ABCF3-206ENST00000466742 MYO15BQ96JP2 1530 aa26.83■■□□□ 1.88
ABCF3-206ENST00000466742 SHROOM4Q9ULL8 1493 aa26.78■■□□□ 1.88
ABCF3-206ENST00000466742 NACADO15069 1562 aa26.58■■□□□ 1.85
ABCF3-206ENST00000466742 PELP1Q8IZL8 1130 aaKnown RBP26.44■■□□□ 1.82
ABCF3-206ENST00000466742 RB1CC1Q8TDY2 1594 aa26.31■■□□□ 1.8
ABCF3-206ENST00000466742 SCRIBQ14160 1630 aa26.22■■□□□ 1.79
ABCF3-206ENST00000466742 HRCP23327 699 aa26.17■■□□□ 1.78
ABCF3-206ENST00000466742 SUPT5HO00267 1087 aaKnown RBP25.83■■□□□ 1.73
ABCF3-206ENST00000466742 MYT1Q01538 1121 aa25.7■■□□□ 1.7
ABCF3-206ENST00000466742 UNC13AQ9UPW8 1703 aa25.67■■□□□ 1.7
ABCF3-206ENST00000466742 BICRAQ9NZM4 1560 aa25.51■■□□□ 1.67
ABCF3-206ENST00000466742 RSF1Q96T23 1441 aaPredicted RBP25.5■■□□□ 1.67
ABCF3-206ENST00000466742 CECR2Q9BXF3 1484 aa25.47■■□□□ 1.67
ABCF3-206ENST00000466742 PABPN1Q86U42 306 aaKnown RBP eCLIP25.41■■□□□ 1.661e-6■■■□□ 18.9
ABCF3-206ENST00000466742 PPARGC1BQ86YN6 1023 aaKnown RBP25.35■■□□□ 1.65
ABCF3-206ENST00000466742 MROH2BQ7Z745 1585 aa25.34■■□□□ 1.65
ABCF3-206ENST00000466742 BAZ1AQ9NRL2 1556 aaPredicted RBP25.32■■□□□ 1.64
ABCF3-206ENST00000466742 SMARCA4P51532 1647 aa25.16■■□□□ 1.62
ABCF3-206ENST00000466742 PCGF6Q9BYE7 350 aa25.09■■□□□ 1.61
ABCF3-206ENST00000466742 WIZO95785 1651 aa25.08■■□□□ 1.61
ABCF3-206ENST00000466742 SCAF1Q9H7N4 1312 aaKnown RBP25.05■■□□□ 1.6
ABCF3-206ENST00000466742 PEG3Q9GZU2 1588 aa24.9■■□□□ 1.58
ABCF3-206ENST00000466742 TOP2AP11388 1531 aaKnown RBP24.88■■□□□ 1.57
ABCF3-206ENST00000466742 CHIC1Q5VXU3 224 aa24.81■■□□□ 1.56
ABCF3-206ENST00000466742 ATAD2BQ9ULI0 1458 aa24.78■■□□□ 1.56
ABCF3-206ENST00000466742 SMARCA2P51531 1590 aa24.75■■□□□ 1.55
ABCF3-206ENST00000466742 EIF4G1Q04637 1599 aaKnown RBP24.74■■□□□ 1.55
ABCF3-206ENST00000466742 CCDC88BA6NC98 1476 aa24.64■■□□□ 1.53
ABCF3-206ENST00000466742 BAZ1BQ9UIG0 1483 aaKnown RBP24.62■■□□□ 1.53
ABCF3-206ENST00000466742 NCAPD3P42695 1498 aa24.57■■□□□ 1.52
ABCF3-206ENST00000466742 HMGXB3Q12766 1538 aa24.52■■□□□ 1.52
ABCF3-206ENST00000466742 ZEB1P37275 1124 aaPredicted RBP24.44■■□□□ 1.5
ABCF3-206ENST00000466742 TTBK1Q5TCY1 1321 aaPredicted RBP24.38■■□□□ 1.49
ABCF3-206ENST00000466742 CC2D2AQ9P2K1 1620 aa24.33■■□□□ 1.48
ABCF3-206ENST00000466742 TRIM41Q8WV44 630 aa24.32■■□□□ 1.48
ABCF3-206ENST00000466742 ACIN1Q9UKV3 1341 aaKnown RBP24.3■■□□□ 1.48
ABCF3-206ENST00000466742 TRIM26Q12899 539 aaPredicted RBP24.3■■□□□ 1.48
ABCF3-206ENST00000466742 NEUROD1Q13562 356 aa24.11■■□□□ 1.45
ABCF3-206ENST00000466742 ABCC8Q09428 1581 aa24.1■■□□□ 1.45
ABCF3-206ENST00000466742 CFTRP13569 1480 aa24.04■■□□□ 1.44
ABCF3-206ENST00000466742 GTF3C3Q9Y5Q9 886 aa24.03■■□□□ 1.44
ABCF3-206ENST00000466742 WRNQ14191 1432 aaPredicted RBP eCLIP24■■□□□ 1.43
ABCF3-206ENST00000466742 CADPSQ9ULU8 1353 aa23.95■■□□□ 1.42
ABCF3-206ENST00000466742 CENPBP07199 599 aaPredicted RBP23.88■■□□□ 1.41
ABCF3-206ENST00000466742 DNAJC5BQ9UF47 199 aa23.85■■□□□ 1.41
ABCF3-206ENST00000466742 SYNJ1O43426 1573 aa23.84■■□□□ 1.41
ABCF3-206ENST00000466742 LOC105371045A0A1W2PR82 267 aa23.83■■□□□ 1.41
ABCF3-206ENST00000466742 FAM9AQ8IZU1 332 aaPredicted RBP23.82■■□□□ 1.4
ABCF3-206ENST00000466742 PRDM2Q13029 1718 aa23.78■■□□□ 1.4
ABCF3-206ENST00000466742 TOP2BQ02880 1626 aa23.76■■□□□ 1.39
ABCF3-206ENST00000466742 EEA1Q15075 1411 aa23.72■■□□□ 1.39
ABCF3-206ENST00000466742 SOGA1O94964 1423 aa23.72■■□□□ 1.39
ABCF3-206ENST00000466742 BIVM-ERCC5R4GMW8 1640 aa23.71■■□□□ 1.39
ABCF3-206ENST00000466742 CUX1P39880 1505 aa23.68■■□□□ 1.38
ABCF3-206ENST00000466742 BCL11AQ9H165 835 aa23.68■■□□□ 1.38
ABCF3-206ENST00000466742 LAMC3Q9Y6N6 1575 aa23.67■■□□□ 1.38
ABCF3-206ENST00000466742 FANCD2Q9BXW9 1451 aa23.65■■□□□ 1.38
ABCF3-206ENST00000466742 NESP48681 1621 aa23.64■■□□□ 1.37
ABCF3-206ENST00000466742 RUSC2Q8N2Y8 1516 aa23.59■■□□□ 1.37
ABCF3-206ENST00000466742 CSRNP3Q8WYN3 585 aa23.58■■□□□ 1.36
ABCF3-206ENST00000466742 PDS5BQ9NTI5 1447 aa23.52■■□□□ 1.36
ABCF3-206ENST00000466742 CEP164Q9UPV0 1460 aa23.48■■□□□ 1.35
ABCF3-206ENST00000466742 DIEXFQ68CQ4 756 aaKnown RBP23.45■■□□□ 1.34
ABCF3-206ENST00000466742 DNMBPQ6XZF7 1577 aa23.44■■□□□ 1.34
ABCF3-206ENST00000466742 EHMT2Q96KQ7 1210 aa23.44■■□□□ 1.34
ABCF3-206ENST00000466742 FGD5Q6ZNL6 1462 aa23.41■■□□□ 1.34
ABCF3-206ENST00000466742 TOPBP1Q92547 1522 aa23.4■■□□□ 1.34
ABCF3-206ENST00000466742 KIF27Q86VH2 1401 aa23.39■■□□□ 1.33
ABCF3-206ENST00000466742 GOLGA3Q08378 1498 aa23.37■■□□□ 1.33
ABCF3-206ENST00000466742 KIF21BO75037 1637 aa23.36■■□□□ 1.33
ABCF3-206ENST00000466742 URB2Q14146 1524 aaKnown RBP23.34■■□□□ 1.33
ABCF3-206ENST00000466742 TNIKQ9UKE5 1360 aa23.34■■□□□ 1.33
ABCF3-206ENST00000466742 ANP32EQ9BTT0 268 aa23.32■■□□□ 1.32
ABCF3-206ENST00000466742 POLA1P09884 1462 aaPredicted RBP23.3■■□□□ 1.32
ABCF3-206ENST00000466742 KIF21AQ7Z4S6 1674 aa23.29■■□□□ 1.32
ABCF3-206ENST00000466742 CUX2O14529 1486 aa23.28■■□□□ 1.32
ABCF3-206ENST00000466742 PRXQ9BXM0 1461 aa23.27■■□□□ 1.32
ABCF3-206ENST00000466742 PRKCSHP14314 528 aaPredicted RBP23.25■■□□□ 1.31
ABCF3-206ENST00000466742 UBTFP17480 764 aaKnown RBP23.25■■□□□ 1.31
ABCF3-206ENST00000466742 ABCA10Q8WWZ4 1543 aa23.24■■□□□ 1.31
ABCF3-206ENST00000466742 RAPGEF2Q9Y4G8 1499 aa23.22■■□□□ 1.31
ABCF3-206ENST00000466742 ERICH3Q5RHP9 1530 aa23.21■■□□□ 1.31
ABCF3-206ENST00000466742 RAD54L2Q9Y4B4 1467 aa23.21■■□□□ 1.31
ABCF3-206ENST00000466742 MRC2Q9UBG0 1479 aa23.19■■□□□ 1.3
ABCF3-206ENST00000466742 CEP162Q5TB80 1403 aa23.19■■□□□ 1.3
ABCF3-206ENST00000466742 IGF1RP08069 1367 aa23.19■■□□□ 1.3
ABCF3-206ENST00000466742 WDR97A6NE52 1622 aa23.07■■□□□ 1.28
ABCF3-206ENST00000466742 WDR62O43379 1518 aa23.07■■□□□ 1.28
ABCF3-206ENST00000466742 ERCC6Q03468 1493 aa23.06■■□□□ 1.28
ABCF3-206ENST00000466742 CARMIL1Q5VZK9 1371 aa23.06■■□□□ 1.28
ABCF3-206ENST00000466742 CCER1Q8TC90 406 aaPredicted RBP23.02■■□□□ 1.28
ABCF3-206ENST00000466742 TARBP1Q13395 1621 aaKnown RBP23.02■■□□□ 1.28
ABCF3-206ENST00000466742 CLIP1P30622 1438 aa23■■□□□ 1.27
ABCF3-206ENST00000466742 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms