RNA–Protein interactions for RNA: ENST00000465860.5

EXOSC3-204, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 509 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-204ENST00000465860 AEBP2Q6ZN18 517 aaPredicted RBP22.92■■□□□ 1.26
EXOSC3-204ENST00000465860 CHIC1Q5VXU3 224 aa21.95■■□□□ 1.1
EXOSC3-204ENST00000465860 SENP3Q9H4L4 574 aaPredicted RBP19.47■□□□□ 0.71
EXOSC3-204ENST00000465860 PHF23Q9BUL5 403 aaPredicted RBP19.29■□□□□ 0.68
EXOSC3-204ENST00000465860 FOXD1Q16676 465 aa18.16■□□□□ 0.5
EXOSC3-204ENST00000465860 PLPPR3Q6T4P5 718 aa17.62■□□□□ 0.41
EXOSC3-204ENST00000465860 PPP6R1Q9UPN7 881 aa17.16■□□□□ 0.34
EXOSC3-204ENST00000465860 ADRA2BP18089 450 aa17.12■□□□□ 0.33
EXOSC3-204ENST00000465860 PIAS4Q8N2W9 510 aaPredicted RBP17■□□□□ 0.31
EXOSC3-204ENST00000465860 MSH5O43196 834 aa16.86■□□□□ 0.29
EXOSC3-204ENST00000465860 POTEDQ86YR6 584 aa16.14■□□□□ 0.17
EXOSC3-204ENST00000465860 MAPK8IP2Q13387 824 aaPredicted RBP15.66■□□□□ 0.1
EXOSC3-204ENST00000465860 SCAF1Q9H7N4 1312 aaKnown RBP15.6■□□□□ 0.09
EXOSC3-204ENST00000465860 PPP4R3CPQ6ZMV5 832 aa15.49■□□□□ 0.07
EXOSC3-204ENST00000465860 DMRT2Q9Y5R5 561 aa15.49■□□□□ 0.07
EXOSC3-204ENST00000465860 CNKSR2Q8WXI2 1034 aa15.14■□□□□ 0.01
EXOSC3-204ENST00000465860 HOXD11P31277 338 aaPredicted RBP15.01□□□□□ -0.01
EXOSC3-204ENST00000465860 RNF216Q9NWF9 866 aaPredicted RBP14.94□□□□□ -0.02
EXOSC3-204ENST00000465860 NCBP3Q53F19 620 aaKnown RBP14.93□□□□□ -0.02
EXOSC3-204ENST00000465860 DCAF8L1A6NGE4 600 aa14.84□□□□□ -0.03
EXOSC3-204ENST00000465860 NPM3O75607 178 aaKnown RBP14.75□□□□□ -0.05
EXOSC3-204ENST00000465860 KCNA4P22459 653 aa14.67□□□□□ -0.06
EXOSC3-204ENST00000465860 RNF39Q9H2S5 420 aa14.43□□□□□ -0.1
EXOSC3-204ENST00000465860 DNAJC5BQ9UF47 199 aa14.42□□□□□ -0.1
EXOSC3-204ENST00000465860 CACNB1Q02641 598 aaPredicted RBP14.36□□□□□ -0.11
EXOSC3-204ENST00000465860 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.28□□□□□ -0.12
EXOSC3-204ENST00000465860 C1QBPQ07021 282 aaKnown RBP14.22□□□□□ -0.13
EXOSC3-204ENST00000465860 SLC4A2P04920 1241 aa14.05□□□□□ -0.16
EXOSC3-204ENST00000465860 U3KPZ7 1027 aaPredicted RBP14.04□□□□□ -0.16
EXOSC3-204ENST00000465860 SLC4A1APQ9BWU0 796 aaKnown RBP13.87□□□□□ -0.19
EXOSC3-204ENST00000465860 SPINK5Q9NQ38 1064 aaPredicted RBP13.78□□□□□ -0.2
EXOSC3-204ENST00000465860 CAPN15O75808 1086 aa13.72□□□□□ -0.21
EXOSC3-204ENST00000465860 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.65□□□□□ -0.22
EXOSC3-204ENST00000465860 HNRNPUL2Q1KMD3 747 aaKnown RBP13.65□□□□□ -0.22
EXOSC3-204ENST00000465860 MYCNP04198 464 aaPredicted RBP13.62□□□□□ -0.23
EXOSC3-204ENST00000465860 DSG3P32926 999 aa13.6□□□□□ -0.23
EXOSC3-204ENST00000465860 APLP2Q06481 763 aa13.6□□□□□ -0.23
EXOSC3-204ENST00000465860 SAMD1Q6SPF0 538 aaPredicted RBP13.6□□□□□ -0.23
EXOSC3-204ENST00000465860 FOXD4L1Q9NU39 408 aa13.6□□□□□ -0.23
EXOSC3-204ENST00000465860 TRHP20396 242 aaPredicted RBP13.56□□□□□ -0.24
EXOSC3-204ENST00000465860 ZNF219Q9P2Y4 722 aaPredicted RBP13.51□□□□□ -0.25
EXOSC3-204ENST00000465860 ZBTB22O15209 634 aa13.5□□□□□ -0.25
EXOSC3-204ENST00000465860 ABCB7O75027 752 aa13.43□□□□□ -0.26
EXOSC3-204ENST00000465860 ATF5Q9Y2D1 282 aaPredicted RBP13.33□□□□□ -0.28
EXOSC3-204ENST00000465860 POLA2Q14181 598 aa13.24□□□□□ -0.29
EXOSC3-204ENST00000465860 ATXN8OSP0DMR3 200 aa13.14□□□□□ -0.31
EXOSC3-204ENST00000465860 CSRNP3Q8WYN3 585 aa13.07□□□□□ -0.32
EXOSC3-204ENST00000465860 EHMT2Q96KQ7 1210 aa13□□□□□ -0.33
EXOSC3-204ENST00000465860 ZBTB12Q9Y330 459 aaPredicted RBP12.95□□□□□ -0.34
EXOSC3-204ENST00000465860 RBM42Q9BTD8 480 aaKnown RBP12.93□□□□□ -0.34
EXOSC3-204ENST00000465860 OSCARQ8IYS5 282 aa12.82□□□□□ -0.36
EXOSC3-204ENST00000465860 FBLN2P98095 1184 aa12.74□□□□□ -0.37
EXOSC3-204ENST00000465860 MKRN4PQ13434 485 aaPredicted RBP12.72□□□□□ -0.37
EXOSC3-204ENST00000465860 AKT1S1Q96B36 256 aa12.7□□□□□ -0.38
EXOSC3-204ENST00000465860 POTEHQ6S545 545 aa12.67□□□□□ -0.38
EXOSC3-204ENST00000465860 SPDYE2BA6NHP3 402 aa12.59□□□□□ -0.39
EXOSC3-204ENST00000465860 SPDYE6P0CI01 402 aa12.59□□□□□ -0.39
EXOSC3-204ENST00000465860 SPDYE2Q495Y8 402 aa12.59□□□□□ -0.39
EXOSC3-204ENST00000465860 CHRDL2Q6WN34 429 aa12.59□□□□□ -0.39
EXOSC3-204ENST00000465860 REM2Q8IYK8 340 aaPredicted RBP12.59□□□□□ -0.39
EXOSC3-204ENST00000465860 ZNF692Q9BU19 519 aaPredicted RBP12.48□□□□□ -0.41
EXOSC3-204ENST00000465860 PITPNM1O00562 1244 aa12.46□□□□□ -0.41
EXOSC3-204ENST00000465860 SSUH2Q9Y2M2 353 aa12.46□□□□□ -0.41
EXOSC3-204ENST00000465860 PIP4P2Q8N4L2 257 aa12.35□□□□□ -0.43
EXOSC3-204ENST00000465860 SPDYE1Q8NFV5 336 aaPredicted RBP12.32□□□□□ -0.44
EXOSC3-204ENST00000465860 FXR2P51116 673 aaKnown RBP eCLIP12.31□□□□□ -0.44
EXOSC3-204ENST00000465860 PABPN1Q86U42 306 aaKnown RBP eCLIP12.31□□□□□ -0.44
EXOSC3-204ENST00000465860 CLEC11AQ9Y240 323 aa12.3□□□□□ -0.44
EXOSC3-204ENST00000465860 SPDYE4A6NLX3 237 aa12.2□□□□□ -0.46
EXOSC3-204ENST00000465860 PRKAR2AP13861 404 aaKnown RBP12.14□□□□□ -0.47
EXOSC3-204ENST00000465860 PRR29P0C7W0 189 aa12.12□□□□□ -0.47
EXOSC3-204ENST00000465860 CHADLQ6NUI6 762 aa12.07□□□□□ -0.48
EXOSC3-204ENST00000465860 HAX1O00165 279 aa12.05□□□□□ -0.48
EXOSC3-204ENST00000465860 STAG3Q9UJ98 1225 aa11.99□□□□□ -0.49
EXOSC3-204ENST00000465860 SP7Q8TDD2 431 aaPredicted RBP11.98□□□□□ -0.49
EXOSC3-204ENST00000465860 EVX2Q03828 476 aa11.96□□□□□ -0.49
EXOSC3-204ENST00000465860 PROM2Q8N271 834 aa11.95□□□□□ -0.5
EXOSC3-204ENST00000465860 C19orf67A6NJJ6 358 aa11.9□□□□□ -0.5
EXOSC3-204ENST00000465860 CREBZFQ9NS37 354 aa11.89□□□□□ -0.51
EXOSC3-204ENST00000465860 FARP1Q9Y4F1 1045 aaPredicted RBP11.89□□□□□ -0.51
EXOSC3-204ENST00000465860 FKBP8Q14318 412 aa11.83□□□□□ -0.52
EXOSC3-204ENST00000465860 NISCHQ9Y2I1 1504 aa11.8□□□□□ -0.52
EXOSC3-204ENST00000465860 CD44P16070 742 aaKnown RBP11.76□□□□□ -0.53
EXOSC3-204ENST00000465860 MNX1P50219 401 aaPredicted RBP11.73□□□□□ -0.53
EXOSC3-204ENST00000465860 GABBR2O75899 941 aa11.68□□□□□ -0.54
EXOSC3-204ENST00000465860 NPM1P06748 294 aaKnown RBP eCLIP11.64□□□□□ -0.55
EXOSC3-204ENST00000465860 ZRANB1Q9UGI0 708 aa11.63□□□□□ -0.55
EXOSC3-204ENST00000465860 MIER1Q8N108 512 aa11.61□□□□□ -0.55
EXOSC3-204ENST00000465860 ZNF579Q8NAF0 562 aaKnown RBP11.59□□□□□ -0.55
EXOSC3-204ENST00000465860 PAK3O75914 559 aaPredicted RBP11.54□□□□□ -0.56
EXOSC3-204ENST00000465860 PLEKHG5O94827 1062 aa11.54□□□□□ -0.56
EXOSC3-204ENST00000465860 PLCD3Q8N3E9 789 aa11.54□□□□□ -0.56
EXOSC3-204ENST00000465860 CLCN6P51797 869 aa11.52□□□□□ -0.57
EXOSC3-204ENST00000465860 PHF12Q96QT6 1004 aa11.5□□□□□ -0.57
EXOSC3-204ENST00000465860 FBXO3Q9UK99 471 aa11.48□□□□□ -0.57
EXOSC3-204ENST00000465860 TSPYL2Q9H2G4 693 aaPredicted RBP11.47□□□□□ -0.57
EXOSC3-204ENST00000465860 POTEIP0CG38 1075 aa11.46□□□□□ -0.57
EXOSC3-204ENST00000465860 GALR2O43603 387 aaPredicted RBP11.45□□□□□ -0.58
EXOSC3-204ENST00000465860 RASEFQ8IZ41 740 aa11.43□□□□□ -0.58
EXOSC3-204ENST00000465860 ZBTB47Q9UFB7 747 aaPredicted RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms