RNA–Protein interactions for RNA: ENST00000465385.5

MMP11-206, Transcript of matrix metallopeptidase 11, humanhuman

TSL 2

Gene MMP11, Length 3,823 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP11-206ENST00000465385 NISCHQ9Y2I1 1504 aa26.15■■□□□ 1.78
MMP11-206ENST00000465385 SHROOM4Q9ULL8 1493 aa23.56■■□□□ 1.36
MMP11-206ENST00000465385 SUPT5HO00267 1087 aaKnown RBP23.35■■□□□ 1.33
MMP11-206ENST00000465385 DCAF8L2P0C7V8 631 aa22.85■■□□□ 1.25
MMP11-206ENST00000465385 PCGF6Q9BYE7 350 aa22.53■■□□□ 1.2
MMP11-206ENST00000465385 HRCP23327 699 aa22.41■■□□□ 1.18
MMP11-206ENST00000465385 CHIC1Q5VXU3 224 aa22.4■■□□□ 1.18
MMP11-206ENST00000465385 MYO15BQ96JP2 1530 aa22.29■■□□□ 1.16
MMP11-206ENST00000465385 PPARGC1BQ86YN6 1023 aaKnown RBP22.27■■□□□ 1.16
MMP11-206ENST00000465385 ZCCHC6Q5VYS8 1495 aaKnown RBP22.11■■□□□ 1.13
MMP11-206ENST00000465385 LOC105371045A0A1W2PR82 267 aa22.09■■□□□ 1.13
MMP11-206ENST00000465385 EHMT2Q96KQ7 1210 aa21.87■■□□□ 1.09
MMP11-206ENST00000465385 CCDC180Q9P1Z9 1646 aa21.76■■□□□ 1.07
MMP11-206ENST00000465385 FAM9AQ8IZU1 332 aaPredicted RBP21.73■■□□□ 1.07
MMP11-206ENST00000465385 TRIM26Q12899 539 aaPredicted RBP21.64■■□□□ 1.05
MMP11-206ENST00000465385 DCAF1Q9Y4B6 1507 aa21.53■■□□□ 1.04
MMP11-206ENST00000465385 TRIM41Q8WV44 630 aa21.49■■□□□ 1.03
MMP11-206ENST00000465385 ABCC9O60706 1549 aa21.29■■□□□ 1
MMP11-206ENST00000465385 ZEB1P37275 1124 aaPredicted RBP21.27■■□□□ 1
MMP11-206ENST00000465385 TTBK1Q5TCY1 1321 aaPredicted RBP21.21■□□□□ 0.99
MMP11-206ENST00000465385 SCRIBQ14160 1630 aa21.04■□□□□ 0.96
MMP11-206ENST00000465385 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.04■□□□□ 0.96
MMP11-206ENST00000465385 CCER1Q8TC90 406 aaPredicted RBP21.03■□□□□ 0.96
MMP11-206ENST00000465385 SCAF1Q9H7N4 1312 aaKnown RBP21.02■□□□□ 0.96
MMP11-206ENST00000465385 RSF1Q96T23 1441 aaPredicted RBP21.01■□□□□ 0.95
MMP11-206ENST00000465385 PELP1Q8IZL8 1130 aaKnown RBP20.88■□□□□ 0.93
MMP11-206ENST00000465385 RB1CC1Q8TDY2 1594 aa20.88■□□□□ 0.93
MMP11-206ENST00000465385 NEUROD1Q13562 356 aa20.69■□□□□ 0.9
MMP11-206ENST00000465385 DIEXFQ68CQ4 756 aaKnown RBP20.68■□□□□ 0.9
MMP11-206ENST00000465385 CECR2Q9BXF3 1484 aa20.66■□□□□ 0.9
MMP11-206ENST00000465385 YTHDC1Q96MU7 727 aaKnown RBP20.65■□□□□ 0.9
MMP11-206ENST00000465385 ACIN1Q9UKV3 1341 aaKnown RBP20.65■□□□□ 0.9
MMP11-206ENST00000465385 CENPBP07199 599 aaPredicted RBP20.63■□□□□ 0.89
MMP11-206ENST00000465385 GTF3C3Q9Y5Q9 886 aa20.62■□□□□ 0.89
MMP11-206ENST00000465385 UBTFP17480 764 aaKnown RBP20.58■□□□□ 0.89
MMP11-206ENST00000465385 PABPN1Q86U42 306 aaKnown RBP eCLIP20.51■□□□□ 0.87
MMP11-206ENST00000465385 MROH2BQ7Z745 1585 aa20.51■□□□□ 0.87
MMP11-206ENST00000465385 RANGAP1P46060 587 aaPredicted RBP20.5■□□□□ 0.87
MMP11-206ENST00000465385 NACADO15069 1562 aa20.46■□□□□ 0.87
MMP11-206ENST00000465385 HNRNPUL2Q1KMD3 747 aaKnown RBP20.43■□□□□ 0.86
MMP11-206ENST00000465385 WIZO95785 1651 aa20.41■□□□□ 0.86
MMP11-206ENST00000465385 ABCC8Q09428 1581 aa20.3■□□□□ 0.84
MMP11-206ENST00000465385 ZNF316A6NFI3 1004 aaPredicted RBP20.29■□□□□ 0.84
MMP11-206ENST00000465385 CEP162Q5TB80 1403 aa20.29■□□□□ 0.84
MMP11-206ENST00000465385 CCDC88BA6NC98 1476 aa20.25■□□□□ 0.83
MMP11-206ENST00000465385 CSRNP3Q8WYN3 585 aa20.23■□□□□ 0.83
MMP11-206ENST00000465385 SOGA1O94964 1423 aa20.23■□□□□ 0.83
MMP11-206ENST00000465385 APLP2Q06481 763 aa20.23■□□□□ 0.83
MMP11-206ENST00000465385 MIER1Q8N108 512 aa20.16■□□□□ 0.82
MMP11-206ENST00000465385 RUSC2Q8N2Y8 1516 aa20.09■□□□□ 0.81
MMP11-206ENST00000465385 BAZ1AQ9NRL2 1556 aaPredicted RBP20.07■□□□□ 0.8
MMP11-206ENST00000465385 TNIKQ9UKE5 1360 aa20.06■□□□□ 0.8
MMP11-206ENST00000465385 WRNQ14191 1432 aaPredicted RBP eCLIP20.01■□□□□ 0.79
MMP11-206ENST00000465385 GOLGA3Q08378 1498 aa19.93■□□□□ 0.78
MMP11-206ENST00000465385 ITGAEP38570 1179 aa19.92■□□□□ 0.78
MMP11-206ENST00000465385 TOP2AP11388 1531 aaKnown RBP19.91■□□□□ 0.78
MMP11-206ENST00000465385 CLIP1P30622 1438 aa19.88■□□□□ 0.77
MMP11-206ENST00000465385 MYT1Q01538 1121 aa19.87■□□□□ 0.77
MMP11-206ENST00000465385 EIF4G1Q04637 1599 aaKnown RBP19.85■□□□□ 0.77
MMP11-206ENST00000465385 SMARCA2P51531 1590 aa19.85■□□□□ 0.77
MMP11-206ENST00000465385 EEA1Q15075 1411 aa19.84■□□□□ 0.77
MMP11-206ENST00000465385 SMARCA4P51532 1647 aa19.8■□□□□ 0.76
MMP11-206ENST00000465385 CEP164Q9UPV0 1460 aa19.73■□□□□ 0.75
MMP11-206ENST00000465385 VPS8Q8N3P4 1428 aa19.68■□□□□ 0.74
MMP11-206ENST00000465385 BCANQ96GW7 911 aa19.68■□□□□ 0.74
MMP11-206ENST00000465385 RAPGEF2Q9Y4G8 1499 aa19.65■□□□□ 0.74
MMP11-206ENST00000465385 UNC13AQ9UPW8 1703 aa19.61■□□□□ 0.73
MMP11-206ENST00000465385 KANK4Q5T7N3 995 aaPredicted RBP19.61■□□□□ 0.73
MMP11-206ENST00000465385 ATP1B4Q9UN42 357 aaPredicted RBP19.6■□□□□ 0.73
MMP11-206ENST00000465385 SUPT16HQ9Y5B9 1047 aaKnown RBP19.6■□□□□ 0.73
MMP11-206ENST00000465385 SYNJ1O43426 1573 aa19.56■□□□□ 0.72
MMP11-206ENST00000465385 BICRAQ9NZM4 1560 aa19.54■□□□□ 0.72
MMP11-206ENST00000465385 DHX57Q6P158 1386 aaKnown RBP19.51■□□□□ 0.71
MMP11-206ENST00000465385 KCNH8Q96L42 1107 aa19.51■□□□□ 0.71
MMP11-206ENST00000465385 BAZ1BQ9UIG0 1483 aaKnown RBP19.47■□□□□ 0.71
MMP11-206ENST00000465385 HIRIP3Q9BW71 556 aaPredicted RBP19.46■□□□□ 0.71
MMP11-206ENST00000465385 KIF21BO75037 1637 aa19.46■□□□□ 0.71
MMP11-206ENST00000465385 FAM50AQ14320 339 aaKnown RBP19.45■□□□□ 0.7
MMP11-206ENST00000465385 DDX10Q13206 875 aaKnown RBP19.44■□□□□ 0.7
MMP11-206ENST00000465385 FKBP8Q14318 412 aa19.39■□□□□ 0.7
MMP11-206ENST00000465385 P3H3Q8IVL6 736 aa19.39■□□□□ 0.69
MMP11-206ENST00000465385 ATAD2BQ9ULI0 1458 aa19.38■□□□□ 0.69
MMP11-206ENST00000465385 CLSPNQ9HAW4 1339 aa19.37■□□□□ 0.69
MMP11-206ENST00000465385 TSHZ2Q9NRE2 1034 aa19.36■□□□□ 0.69
MMP11-206ENST00000465385 NEFLP07196 543 aa19.35■□□□□ 0.69
MMP11-206ENST00000465385 SIN3AQ96ST3 1273 aa19.35■□□□□ 0.69
MMP11-206ENST00000465385 TRIM52Q96A61 297 aa19.34■□□□□ 0.69
MMP11-206ENST00000465385 CCNB3Q8WWL7 1395 aa19.32■□□□□ 0.68
MMP11-206ENST00000465385 ARAP1Q96P48 1450 aa19.27■□□□□ 0.68
MMP11-206ENST00000465385 RAB3GAP2Q9H2M9 1393 aa19.25■□□□□ 0.67
MMP11-206ENST00000465385 KIF27Q86VH2 1401 aa19.2■□□□□ 0.66
MMP11-206ENST00000465385 ANP32EQ9BTT0 268 aa19.19■□□□□ 0.66
MMP11-206ENST00000465385 ANP32CO43423 234 aa19.18■□□□□ 0.66
MMP11-206ENST00000465385 PRXQ9BXM0 1461 aa19.14■□□□□ 0.65
MMP11-206ENST00000465385 RRBP1Q9P2E9 1410 aaKnown RBP19.13■□□□□ 0.65
MMP11-206ENST00000465385 IRX6P78412 446 aaPredicted RBP19.13■□□□□ 0.65
MMP11-206ENST00000465385 TOP2BQ02880 1626 aa19.12■□□□□ 0.65
MMP11-206ENST00000465385 ARHGAP35Q9NRY4 1499 aa19.08■□□□□ 0.64
MMP11-206ENST00000465385 PEG3Q9GZU2 1588 aa19.08■□□□□ 0.64
MMP11-206ENST00000465385 SETD5Q9C0A6 1442 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms