RNA–Protein interactions for RNA: ENST00000463013.1

KDM3A-208, Transcript of lysine demethylase 3A, humanhuman

TSL 3

Gene KDM3A, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3A-208ENST00000463013 AEBP2Q6ZN18 517 aaPredicted RBP25.14■■□□□ 1.62
KDM3A-208ENST00000463013 CHIC1Q5VXU3 224 aa23.74■■□□□ 1.39
KDM3A-208ENST00000463013 SENP3Q9H4L4 574 aaPredicted RBP21.72■■□□□ 1.07
KDM3A-208ENST00000463013 PHF23Q9BUL5 403 aaPredicted RBP21.32■■□□□ 1
KDM3A-208ENST00000463013 FOXD1Q16676 465 aa20.15■□□□□ 0.82
KDM3A-208ENST00000463013 MSH5O43196 834 aa19.17■□□□□ 0.66
KDM3A-208ENST00000463013 POTEDQ86YR6 584 aa19.17■□□□□ 0.66
KDM3A-208ENST00000463013 PLPPR3Q6T4P5 718 aa18.82■□□□□ 0.6
KDM3A-208ENST00000463013 PIAS4Q8N2W9 510 aaPredicted RBP18.81■□□□□ 0.6
KDM3A-208ENST00000463013 PPP6R1Q9UPN7 881 aa18.5■□□□□ 0.55
KDM3A-208ENST00000463013 ADRA2BP18089 450 aa18.46■□□□□ 0.55
KDM3A-208ENST00000463013 SCAF1Q9H7N4 1312 aaKnown RBP17.16■□□□□ 0.34
KDM3A-208ENST00000463013 DMRT2Q9Y5R5 561 aa17.1■□□□□ 0.33
KDM3A-208ENST00000463013 MAPK8IP2Q13387 824 aaPredicted RBP17.03■□□□□ 0.32
KDM3A-208ENST00000463013 CACNB1Q02641 598 aaPredicted RBP16.65■□□□□ 0.26
KDM3A-208ENST00000463013 DCAF8L1A6NGE4 600 aa16.47■□□□□ 0.23
KDM3A-208ENST00000463013 PPP4R3CPQ6ZMV5 832 aa16.38■□□□□ 0.21
KDM3A-208ENST00000463013 HOXD11P31277 338 aaPredicted RBP16.34■□□□□ 0.21
KDM3A-208ENST00000463013 CNKSR2Q8WXI2 1034 aa16.22■□□□□ 0.19
KDM3A-208ENST00000463013 RNF39Q9H2S5 420 aa16.22■□□□□ 0.19
KDM3A-208ENST00000463013 RNF216Q9NWF9 866 aaPredicted RBP16.16■□□□□ 0.18
KDM3A-208ENST00000463013 C1QBPQ07021 282 aaKnown RBP16.07■□□□□ 0.16
KDM3A-208ENST00000463013 DNAJC5BQ9UF47 199 aa15.95■□□□□ 0.14
KDM3A-208ENST00000463013 NCBP3Q53F19 620 aaKnown RBP15.8■□□□□ 0.12
KDM3A-208ENST00000463013 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.64■□□□□ 0.097e-7■□□□□ 10.8
KDM3A-208ENST00000463013 NPM3O75607 178 aaKnown RBP15.37■□□□□ 0.05
KDM3A-208ENST00000463013 U3KPZ7 1027 aaPredicted RBP15.14■□□□□ 0.01
KDM3A-208ENST00000463013 CAPN15O75808 1086 aa15.12■□□□□ 0.01
KDM3A-208ENST00000463013 DSG3P32926 999 aa15.05■□□□□ -0
KDM3A-208ENST00000463013 SPINK5Q9NQ38 1064 aaPredicted RBP15.01□□□□□ -0.01
KDM3A-208ENST00000463013 POTEHQ6S545 545 aa15□□□□□ -0.01
KDM3A-208ENST00000463013 APLP2Q06481 763 aa14.96□□□□□ -0.01
KDM3A-208ENST00000463013 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.82□□□□□ -0.04
KDM3A-208ENST00000463013 HNRNPUL2Q1KMD3 747 aaKnown RBP14.82□□□□□ -0.04
KDM3A-208ENST00000463013 ZNF219Q9P2Y4 722 aaPredicted RBP14.81□□□□□ -0.04
KDM3A-208ENST00000463013 TRHP20396 242 aaPredicted RBP14.77□□□□□ -0.05
KDM3A-208ENST00000463013 SLC4A2P04920 1241 aa14.73□□□□□ -0.05
KDM3A-208ENST00000463013 KCNA4P22459 653 aa14.72□□□□□ -0.05
KDM3A-208ENST00000463013 SAMD1Q6SPF0 538 aaPredicted RBP14.66□□□□□ -0.06
KDM3A-208ENST00000463013 ABCB7O75027 752 aa14.65□□□□□ -0.06
KDM3A-208ENST00000463013 RBM42Q9BTD8 480 aaKnown RBP14.54□□□□□ -0.08
KDM3A-208ENST00000463013 MYCNP04198 464 aaPredicted RBP14.32□□□□□ -0.12
KDM3A-208ENST00000463013 POLA2Q14181 598 aa14.29□□□□□ -0.12
KDM3A-208ENST00000463013 CHRDL2Q6WN34 429 aa14.26□□□□□ -0.13
KDM3A-208ENST00000463013 ZBTB12Q9Y330 459 aaPredicted RBP14.11□□□□□ -0.15
KDM3A-208ENST00000463013 AKT1S1Q96B36 256 aa14.07□□□□□ -0.16
KDM3A-208ENST00000463013 FOXD4L1Q9NU39 408 aa13.95□□□□□ -0.18
KDM3A-208ENST00000463013 SLC4A1APQ9BWU0 796 aaKnown RBP13.92□□□□□ -0.18
KDM3A-208ENST00000463013 SP7Q8TDD2 431 aaPredicted RBP13.91□□□□□ -0.18
KDM3A-208ENST00000463013 REM2Q8IYK8 340 aaPredicted RBP13.87□□□□□ -0.19
KDM3A-208ENST00000463013 ATF5Q9Y2D1 282 aaPredicted RBP13.84□□□□□ -0.19
KDM3A-208ENST00000463013 OSCARQ8IYS5 282 aa13.78□□□□□ -0.2
KDM3A-208ENST00000463013 PIP4P2Q8N4L2 257 aa13.78□□□□□ -0.2
KDM3A-208ENST00000463013 HAX1O00165 279 aa13.73□□□□□ -0.21
KDM3A-208ENST00000463013 PITPNM1O00562 1244 aa13.68□□□□□ -0.22
KDM3A-208ENST00000463013 FXR2P51116 673 aaKnown RBP eCLIP13.67□□□□□ -0.223e-6■■□□□ 14.2
KDM3A-208ENST00000463013 ATXN8OSP0DMR3 200 aa13.63□□□□□ -0.23
KDM3A-208ENST00000463013 FBLN2P98095 1184 aa13.59□□□□□ -0.23
KDM3A-208ENST00000463013 SPDYE2BA6NHP3 402 aa13.57□□□□□ -0.24
KDM3A-208ENST00000463013 SPDYE6P0CI01 402 aa13.57□□□□□ -0.24
KDM3A-208ENST00000463013 SPDYE2Q495Y8 402 aa13.57□□□□□ -0.24
KDM3A-208ENST00000463013 ZBTB22O15209 634 aa13.44□□□□□ -0.26
KDM3A-208ENST00000463013 SPDYE1Q8NFV5 336 aaPredicted RBP13.44□□□□□ -0.26
KDM3A-208ENST00000463013 CLEC11AQ9Y240 323 aa13.39□□□□□ -0.27
KDM3A-208ENST00000463013 PRKAR2AP13861 404 aaKnown RBP13.37□□□□□ -0.27
KDM3A-208ENST00000463013 EVX2Q03828 476 aa13.34□□□□□ -0.27
KDM3A-208ENST00000463013 ZNF692Q9BU19 519 aaPredicted RBP13.34□□□□□ -0.27
KDM3A-208ENST00000463013 SSUH2Q9Y2M2 353 aa13.26□□□□□ -0.29
KDM3A-208ENST00000463013 C19orf67A6NJJ6 358 aa13.24□□□□□ -0.29
KDM3A-208ENST00000463013 EHMT2Q96KQ7 1210 aa13.22□□□□□ -0.29
KDM3A-208ENST00000463013 MKRN4PQ13434 485 aaPredicted RBP13.2□□□□□ -0.3
KDM3A-208ENST00000463013 PRR29P0C7W0 189 aa13.16□□□□□ -0.3
KDM3A-208ENST00000463013 GABBR2O75899 941 aa13.14□□□□□ -0.31
KDM3A-208ENST00000463013 PABPN1Q86U42 306 aaKnown RBP eCLIP13.09□□□□□ -0.31
KDM3A-208ENST00000463013 CSRNP3Q8WYN3 585 aa13.08□□□□□ -0.32
KDM3A-208ENST00000463013 CHADLQ6NUI6 762 aa13.07□□□□□ -0.32
KDM3A-208ENST00000463013 LHX8Q68G74 356 aa13.06□□□□□ -0.32
KDM3A-208ENST00000463013 CLCN6P51797 869 aa13.03□□□□□ -0.32
KDM3A-208ENST00000463013 CD44P16070 742 aaKnown RBP12.94□□□□□ -0.34
KDM3A-208ENST00000463013 FARP1Q9Y4F1 1045 aaPredicted RBP12.93□□□□□ -0.34
KDM3A-208ENST00000463013 DCBLD2Q96PD2 775 aa12.82□□□□□ -0.36
KDM3A-208ENST00000463013 STAG3Q9UJ98 1225 aa12.8□□□□□ -0.36
KDM3A-208ENST00000463013 POTEIP0CG38 1075 aa12.75□□□□□ -0.37
KDM3A-208ENST00000463013 ZNF579Q8NAF0 562 aaKnown RBP12.72□□□□□ -0.37
KDM3A-208ENST00000463013 ZRANB1Q9UGI0 708 aa12.71□□□□□ -0.37
KDM3A-208ENST00000463013 PAK3O75914 559 aaPredicted RBP12.66□□□□□ -0.38
KDM3A-208ENST00000463013 CREBZFQ9NS37 354 aa12.62□□□□□ -0.39
KDM3A-208ENST00000463013 NPM1P06748 294 aaKnown RBP eCLIP12.56□□□□□ -0.4
KDM3A-208ENST00000463013 SPDYE4A6NLX3 237 aa12.53□□□□□ -0.4
KDM3A-208ENST00000463013 PLSCR2Q9NRY7 297 aa12.52□□□□□ -0.41
KDM3A-208ENST00000463013 GALR2O43603 387 aaPredicted RBP12.51□□□□□ -0.41
KDM3A-208ENST00000463013 PHF12Q96QT6 1004 aa12.42□□□□□ -0.42
KDM3A-208ENST00000463013 OTUD5Q96G74 571 aa12.41□□□□□ -0.42
KDM3A-208ENST00000463013 POTEB2H3BUK9 544 aa12.32□□□□□ -0.44
KDM3A-208ENST00000463013 C7P10643 843 aa12.32□□□□□ -0.44
KDM3A-208ENST00000463013 MNX1P50219 401 aaPredicted RBP12.32□□□□□ -0.44
KDM3A-208ENST00000463013 MAMSTRQ6ZN01 415 aa12.32□□□□□ -0.44
KDM3A-208ENST00000463013 SLC39A7Q92504 469 aa12.32□□□□□ -0.44
KDM3A-208ENST00000463013 POTEMA6NI47 508 aa12.29□□□□□ -0.44
KDM3A-208ENST00000463013 ASTLQ6HA08 431 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms