RNA–Protein interactions for RNA: ENST00000462289.1

VPS36-202, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 2

Gene VPS36, Length 544 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-202ENST00000462289 AEBP2Q6ZN18 517 aaPredicted RBP23.8■■□□□ 1.4
VPS36-202ENST00000462289 CHIC1Q5VXU3 224 aa22.75■■□□□ 1.23
VPS36-202ENST00000462289 SENP3Q9H4L4 574 aaPredicted RBP20.28■□□□□ 0.84
VPS36-202ENST00000462289 PHF23Q9BUL5 403 aaPredicted RBP20.02■□□□□ 0.8
VPS36-202ENST00000462289 FOXD1Q16676 465 aa18.88■□□□□ 0.61
VPS36-202ENST00000462289 PLPPR3Q6T4P5 718 aa18.23■□□□□ 0.51
VPS36-202ENST00000462289 PPP6R1Q9UPN7 881 aa17.76■□□□□ 0.43
VPS36-202ENST00000462289 ADRA2BP18089 450 aa17.67■□□□□ 0.42
VPS36-202ENST00000462289 PIAS4Q8N2W9 510 aaPredicted RBP17.65■□□□□ 0.42
VPS36-202ENST00000462289 MSH5O43196 834 aa17.62■□□□□ 0.41
VPS36-202ENST00000462289 POTEDQ86YR6 584 aa17.26■□□□□ 0.35
VPS36-202ENST00000462289 SCAF1Q9H7N4 1312 aaKnown RBP16.19■□□□□ 0.18
VPS36-202ENST00000462289 MAPK8IP2Q13387 824 aaPredicted RBP16.19■□□□□ 0.18
VPS36-202ENST00000462289 DMRT2Q9Y5R5 561 aa16.12■□□□□ 0.17
VPS36-202ENST00000462289 PPP4R3CPQ6ZMV5 832 aa15.98■□□□□ 0.15
VPS36-202ENST00000462289 CNKSR2Q8WXI2 1034 aa15.67■□□□□ 0.1
VPS36-202ENST00000462289 HOXD11P31277 338 aaPredicted RBP15.6■□□□□ 0.09
VPS36-202ENST00000462289 RNF216Q9NWF9 866 aaPredicted RBP15.51■□□□□ 0.07
VPS36-202ENST00000462289 NCBP3Q53F19 620 aaKnown RBP15.4■□□□□ 0.06
VPS36-202ENST00000462289 DCAF8L1A6NGE4 600 aa15.32■□□□□ 0.04
VPS36-202ENST00000462289 NPM3O75607 178 aaKnown RBP15.2■□□□□ 0.02
VPS36-202ENST00000462289 DNAJC5BQ9UF47 199 aa15.1■□□□□ 0.01
VPS36-202ENST00000462289 RNF39Q9H2S5 420 aa15.06■□□□□ 0
VPS36-202ENST00000462289 KCNA4P22459 653 aa15.02■□□□□ -0
VPS36-202ENST00000462289 CACNB1Q02641 598 aaPredicted RBP14.97□□□□□ -0.01
VPS36-202ENST00000462289 C1QBPQ07021 282 aaKnown RBP14.85□□□□□ -0.03
VPS36-202ENST00000462289 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.77□□□□□ -0.05
VPS36-202ENST00000462289 U3KPZ7 1027 aaPredicted RBP14.53□□□□□ -0.08
VPS36-202ENST00000462289 SLC4A2P04920 1241 aa14.49□□□□□ -0.09
VPS36-202ENST00000462289 SPINK5Q9NQ38 1064 aaPredicted RBP14.25□□□□□ -0.13
VPS36-202ENST00000462289 CAPN15O75808 1086 aa14.18□□□□□ -0.14
VPS36-202ENST00000462289 SLC4A1APQ9BWU0 796 aaKnown RBP14.18□□□□□ -0.14
VPS36-202ENST00000462289 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.17□□□□□ -0.14
VPS36-202ENST00000462289 HNRNPUL2Q1KMD3 747 aaKnown RBP14.17□□□□□ -0.14
VPS36-202ENST00000462289 DSG3P32926 999 aa14.14□□□□□ -0.15
VPS36-202ENST00000462289 APLP2Q06481 763 aa14.13□□□□□ -0.15
VPS36-202ENST00000462289 NISCHQ9Y2I1 1504 aa14.12□□□□□ -0.15
VPS36-202ENST00000462289 SAMD1Q6SPF0 538 aaPredicted RBP14.09□□□□□ -0.15
VPS36-202ENST00000462289 MYCNP04198 464 aaPredicted RBP14.06□□□□□ -0.16
VPS36-202ENST00000462289 ZNF219Q9P2Y4 722 aaPredicted RBP14.03□□□□□ -0.16
VPS36-202ENST00000462289 TRHP20396 242 aaPredicted RBP13.99□□□□□ -0.17
VPS36-202ENST00000462289 FOXD4L1Q9NU39 408 aa13.98□□□□□ -0.17
VPS36-202ENST00000462289 ABCB7O75027 752 aa13.86□□□□□ -0.19
VPS36-202ENST00000462289 ZBTB22O15209 634 aa13.83□□□□□ -0.2
VPS36-202ENST00000462289 ATF5Q9Y2D1 282 aaPredicted RBP13.71□□□□□ -0.21
VPS36-202ENST00000462289 POLA2Q14181 598 aa13.68□□□□□ -0.22
VPS36-202ENST00000462289 ATXN8OSP0DMR3 200 aa13.58□□□□□ -0.24
VPS36-202ENST00000462289 RBM42Q9BTD8 480 aaKnown RBP13.48□□□□□ -0.25
VPS36-202ENST00000462289 ZBTB12Q9Y330 459 aaPredicted RBP13.45□□□□□ -0.26
VPS36-202ENST00000462289 POTEHQ6S545 545 aa13.41□□□□□ -0.26
VPS36-202ENST00000462289 CSRNP3Q8WYN3 585 aa13.31□□□□□ -0.28
VPS36-202ENST00000462289 OSCARQ8IYS5 282 aa13.24□□□□□ -0.29
VPS36-202ENST00000462289 AKT1S1Q96B36 256 aa13.21□□□□□ -0.29
VPS36-202ENST00000462289 FBLN2P98095 1184 aa13.14□□□□□ -0.31
VPS36-202ENST00000462289 EHMT2Q96KQ7 1210 aa13.13□□□□□ -0.31
VPS36-202ENST00000462289 CHRDL2Q6WN34 429 aa13.11□□□□□ -0.31
VPS36-202ENST00000462289 MKRN4PQ13434 485 aaPredicted RBP13.1□□□□□ -0.31
VPS36-202ENST00000462289 REM2Q8IYK8 340 aaPredicted RBP13.06□□□□□ -0.32
VPS36-202ENST00000462289 SPDYE2BA6NHP3 402 aa13.05□□□□□ -0.32
VPS36-202ENST00000462289 SPDYE6P0CI01 402 aa13.05□□□□□ -0.32
VPS36-202ENST00000462289 SPDYE2Q495Y8 402 aa13.05□□□□□ -0.32
VPS36-202ENST00000462289 PITPNM1O00562 1244 aa12.92□□□□□ -0.34
VPS36-202ENST00000462289 SSUH2Q9Y2M2 353 aa12.91□□□□□ -0.34
VPS36-202ENST00000462289 ZNF692Q9BU19 519 aaPredicted RBP12.87□□□□□ -0.35
VPS36-202ENST00000462289 PIP4P2Q8N4L2 257 aa12.84□□□□□ -0.35
VPS36-202ENST00000462289 FXR2P51116 673 aaKnown RBP eCLIP12.82□□□□□ -0.36
VPS36-202ENST00000462289 SPDYE1Q8NFV5 336 aaPredicted RBP12.76□□□□□ -0.37
VPS36-202ENST00000462289 PABPN1Q86U42 306 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS36-202ENST00000462289 CLEC11AQ9Y240 323 aa12.68□□□□□ -0.38
VPS36-202ENST00000462289 CCDC180Q9P1Z9 1646 aa12.6□□□□□ -0.39
VPS36-202ENST00000462289 PRKAR2AP13861 404 aaKnown RBP12.57□□□□□ -0.4
VPS36-202ENST00000462289 SP7Q8TDD2 431 aaPredicted RBP12.54□□□□□ -0.4
VPS36-202ENST00000462289 SPDYE4A6NLX3 237 aa12.52□□□□□ -0.41
VPS36-202ENST00000462289 HAX1O00165 279 aa12.52□□□□□ -0.41
VPS36-202ENST00000462289 PRR29P0C7W0 189 aa12.52□□□□□ -0.41
VPS36-202ENST00000462289 CHADLQ6NUI6 762 aa12.44□□□□□ -0.42
VPS36-202ENST00000462289 EVX2Q03828 476 aa12.42□□□□□ -0.42
VPS36-202ENST00000462289 STAG3Q9UJ98 1225 aa12.4□□□□□ -0.42
VPS36-202ENST00000462289 C19orf67A6NJJ6 358 aa12.39□□□□□ -0.43
VPS36-202ENST00000462289 PROM2Q8N271 834 aa12.34□□□□□ -0.43
VPS36-202ENST00000462289 FARP1Q9Y4F1 1045 aaPredicted RBP12.31□□□□□ -0.44
VPS36-202ENST00000462289 CREBZFQ9NS37 354 aa12.28□□□□□ -0.44
VPS36-202ENST00000462289 CD44P16070 742 aaKnown RBP12.18□□□□□ -0.46
VPS36-202ENST00000462289 GABBR2O75899 941 aa12.14□□□□□ -0.47
VPS36-202ENST00000462289 MNX1P50219 401 aaPredicted RBP12.12□□□□□ -0.47
VPS36-202ENST00000462289 CLCN6P51797 869 aa12.08□□□□□ -0.48
VPS36-202ENST00000462289 ZNF579Q8NAF0 562 aaKnown RBP12.05□□□□□ -0.48
VPS36-202ENST00000462289 NPM1P06748 294 aaKnown RBP eCLIP12.04□□□□□ -0.48
VPS36-202ENST00000462289 ABCC9O60706 1549 aa12.02□□□□□ -0.48
VPS36-202ENST00000462289 FKBP8Q14318 412 aa12.02□□□□□ -0.49
VPS36-202ENST00000462289 ZRANB1Q9UGI0 708 aa12.01□□□□□ -0.49
VPS36-202ENST00000462289 PAK3O75914 559 aaPredicted RBP11.95□□□□□ -0.5
VPS36-202ENST00000462289 POTEIP0CG38 1075 aa11.91□□□□□ -0.5
VPS36-202ENST00000462289 PLEKHG5O94827 1062 aa11.89□□□□□ -0.51
VPS36-202ENST00000462289 MIER1Q8N108 512 aa11.89□□□□□ -0.51
VPS36-202ENST00000462289 GALR2O43603 387 aaPredicted RBP11.86□□□□□ -0.51
VPS36-202ENST00000462289 PHF12Q96QT6 1004 aa11.86□□□□□ -0.51
VPS36-202ENST00000462289 MYO15BQ96JP2 1530 aa11.84□□□□□ -0.51
VPS36-202ENST00000462289 DCBLD2Q96PD2 775 aa11.82□□□□□ -0.52
VPS36-202ENST00000462289 ZCCHC6Q5VYS8 1495 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms