RNA–Protein interactions for RNA: ENST00000461047.2

NUP98-208, Transcript of nucleoporin 98, humanhuman

TSL 3

Gene NUP98, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98-208ENST00000461047 AEBP2Q6ZN18 517 aaPredicted RBP21.56■■□□□ 1.04
NUP98-208ENST00000461047 CHIC1Q5VXU3 224 aa20.78■□□□□ 0.92
NUP98-208ENST00000461047 SENP3Q9H4L4 574 aaPredicted RBP18.48■□□□□ 0.55
NUP98-208ENST00000461047 PHF23Q9BUL5 403 aaPredicted RBP18.24■□□□□ 0.51
NUP98-208ENST00000461047 FOXD1Q16676 465 aa17.11■□□□□ 0.33
NUP98-208ENST00000461047 PLPPR3Q6T4P5 718 aa16.79■□□□□ 0.28
NUP98-208ENST00000461047 ADRA2BP18089 450 aa16.17■□□□□ 0.18
NUP98-208ENST00000461047 PPP6R1Q9UPN7 881 aa16.16■□□□□ 0.18
NUP98-208ENST00000461047 PIAS4Q8N2W9 510 aaPredicted RBP16.13■□□□□ 0.17
NUP98-208ENST00000461047 MSH5O43196 834 aa16.01■□□□□ 0.15
NUP98-208ENST00000461047 POTEDQ86YR6 584 aa15.12■□□□□ 0.01
NUP98-208ENST00000461047 SCAF1Q9H7N4 1312 aaKnown RBP14.92□□□□□ -0.02
NUP98-208ENST00000461047 MAPK8IP2Q13387 824 aaPredicted RBP14.75□□□□□ -0.05
NUP98-208ENST00000461047 PPP4R3CPQ6ZMV5 832 aa14.71□□□□□ -0.05
NUP98-208ENST00000461047 DMRT2Q9Y5R5 561 aa14.65□□□□□ -0.06
NUP98-208ENST00000461047 CNKSR2Q8WXI2 1034 aa14.4□□□□□ -0.1
NUP98-208ENST00000461047 NCBP3Q53F19 620 aaKnown RBP14.32□□□□□ -0.12
NUP98-208ENST00000461047 HOXD11P31277 338 aaPredicted RBP14.19□□□□□ -0.14
NUP98-208ENST00000461047 RNF216Q9NWF9 866 aaPredicted RBP14.19□□□□□ -0.14
NUP98-208ENST00000461047 DCAF8L1A6NGE4 600 aa14.15□□□□□ -0.14
NUP98-208ENST00000461047 NPM3O75607 178 aaKnown RBP13.99□□□□□ -0.17
NUP98-208ENST00000461047 KCNA4P22459 653 aa13.95□□□□□ -0.18
NUP98-208ENST00000461047 NISCHQ9Y2I1 1504 aa13.7□□□□□ -0.22
NUP98-208ENST00000461047 DNAJC5BQ9UF47 199 aa13.67□□□□□ -0.22
NUP98-208ENST00000461047 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.63□□□□□ -0.23
NUP98-208ENST00000461047 RNF39Q9H2S5 420 aa13.62□□□□□ -0.23
NUP98-208ENST00000461047 CACNB1Q02641 598 aaPredicted RBP13.61□□□□□ -0.23
NUP98-208ENST00000461047 C1QBPQ07021 282 aaKnown RBP13.49□□□□□ -0.25
NUP98-208ENST00000461047 SLC4A1APQ9BWU0 796 aaKnown RBP13.28□□□□□ -0.28
NUP98-208ENST00000461047 U3KPZ7 1027 aaPredicted RBP13.27□□□□□ -0.29
NUP98-208ENST00000461047 SLC4A2P04920 1241 aa13.26□□□□□ -0.29
NUP98-208ENST00000461047 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.12□□□□□ -0.31
NUP98-208ENST00000461047 HNRNPUL2Q1KMD3 747 aaKnown RBP13.12□□□□□ -0.31
NUP98-208ENST00000461047 APLP2Q06481 763 aa13.09□□□□□ -0.31
NUP98-208ENST00000461047 CAPN15O75808 1086 aa13.06□□□□□ -0.32
NUP98-208ENST00000461047 SAMD1Q6SPF0 538 aaPredicted RBP13.02□□□□□ -0.33
NUP98-208ENST00000461047 MYCNP04198 464 aaPredicted RBP13□□□□□ -0.33
NUP98-208ENST00000461047 SPINK5Q9NQ38 1064 aaPredicted RBP13□□□□□ -0.33
NUP98-208ENST00000461047 FOXD4L1Q9NU39 408 aa12.99□□□□□ -0.33
NUP98-208ENST00000461047 TRHP20396 242 aaPredicted RBP12.92□□□□□ -0.34
NUP98-208ENST00000461047 ZNF219Q9P2Y4 722 aaPredicted RBP12.9□□□□□ -0.34
NUP98-208ENST00000461047 DSG3P32926 999 aa12.84□□□□□ -0.35
NUP98-208ENST00000461047 ZBTB22O15209 634 aa12.76□□□□□ -0.37
NUP98-208ENST00000461047 ABCB7O75027 752 aa12.74□□□□□ -0.37
NUP98-208ENST00000461047 POLA2Q14181 598 aa12.59□□□□□ -0.39
NUP98-208ENST00000461047 ATF5Q9Y2D1 282 aaPredicted RBP12.57□□□□□ -0.4
NUP98-208ENST00000461047 ATXN8OSP0DMR3 200 aa12.56□□□□□ -0.4
NUP98-208ENST00000461047 EHMT2Q96KQ7 1210 aa12.51□□□□□ -0.41
NUP98-208ENST00000461047 CSRNP3Q8WYN3 585 aa12.44□□□□□ -0.42
NUP98-208ENST00000461047 ZBTB12Q9Y330 459 aaPredicted RBP12.42□□□□□ -0.42
NUP98-208ENST00000461047 RBM42Q9BTD8 480 aaKnown RBP12.35□□□□□ -0.43
NUP98-208ENST00000461047 FBLN2P98095 1184 aa12.23□□□□□ -0.45
NUP98-208ENST00000461047 OSCARQ8IYS5 282 aa12.16□□□□□ -0.46
NUP98-208ENST00000461047 AKT1S1Q96B36 256 aa12.08□□□□□ -0.48
NUP98-208ENST00000461047 CCDC180Q9P1Z9 1646 aa12.07□□□□□ -0.48
NUP98-208ENST00000461047 SPDYE2BA6NHP3 402 aa12.01□□□□□ -0.49
NUP98-208ENST00000461047 SPDYE6P0CI01 402 aa12.01□□□□□ -0.49
NUP98-208ENST00000461047 MKRN4PQ13434 485 aaPredicted RBP12.01□□□□□ -0.49
NUP98-208ENST00000461047 SPDYE2Q495Y8 402 aa12.01□□□□□ -0.49
NUP98-208ENST00000461047 POTEHQ6S545 545 aa11.94□□□□□ -0.5
NUP98-208ENST00000461047 REM2Q8IYK8 340 aaPredicted RBP11.93□□□□□ -0.5
NUP98-208ENST00000461047 ZNF692Q9BU19 519 aaPredicted RBP11.93□□□□□ -0.5
NUP98-208ENST00000461047 CHRDL2Q6WN34 429 aa11.92□□□□□ -0.5
NUP98-208ENST00000461047 SSUH2Q9Y2M2 353 aa11.82□□□□□ -0.52
NUP98-208ENST00000461047 PITPNM1O00562 1244 aa11.79□□□□□ -0.52
NUP98-208ENST00000461047 SPDYE1Q8NFV5 336 aaPredicted RBP11.77□□□□□ -0.53
NUP98-208ENST00000461047 CLEC11AQ9Y240 323 aa11.75□□□□□ -0.53
NUP98-208ENST00000461047 PABPN1Q86U42 306 aaKnown RBP eCLIP11.74□□□□□ -0.53
NUP98-208ENST00000461047 SPDYE4A6NLX3 237 aa11.68□□□□□ -0.54
NUP98-208ENST00000461047 ABCC9O60706 1549 aa11.68□□□□□ -0.54
NUP98-208ENST00000461047 PIP4P2Q8N4L2 257 aa11.66□□□□□ -0.54
NUP98-208ENST00000461047 FXR2P51116 673 aaKnown RBP eCLIP11.62□□□□□ -0.55
NUP98-208ENST00000461047 PRR29P0C7W0 189 aa11.59□□□□□ -0.55
NUP98-208ENST00000461047 DCAF8L2P0C7V8 631 aa11.55□□□□□ -0.56
NUP98-208ENST00000461047 PRKAR2AP13861 404 aaKnown RBP11.53□□□□□ -0.56
NUP98-208ENST00000461047 STAG3Q9UJ98 1225 aa11.52□□□□□ -0.57
NUP98-208ENST00000461047 HAX1O00165 279 aa11.47□□□□□ -0.57
NUP98-208ENST00000461047 CHADLQ6NUI6 762 aa11.42□□□□□ -0.58
NUP98-208ENST00000461047 ZCCHC6Q5VYS8 1495 aaKnown RBP11.42□□□□□ -0.58
NUP98-208ENST00000461047 NACADO15069 1562 aa11.37□□□□□ -0.59
NUP98-208ENST00000461047 MYO15BQ96JP2 1530 aa11.36□□□□□ -0.59
NUP98-208ENST00000461047 DCAF1Q9Y4B6 1507 aa11.36□□□□□ -0.59
NUP98-208ENST00000461047 FKBP8Q14318 412 aa11.35□□□□□ -0.59
NUP98-208ENST00000461047 RB1CC1Q8TDY2 1594 aa11.33□□□□□ -0.6
NUP98-208ENST00000461047 PROM2Q8N271 834 aa11.32□□□□□ -0.6
NUP98-208ENST00000461047 SP7Q8TDD2 431 aaPredicted RBP11.31□□□□□ -0.6
NUP98-208ENST00000461047 FARP1Q9Y4F1 1045 aaPredicted RBP11.3□□□□□ -0.6
NUP98-208ENST00000461047 CREBZFQ9NS37 354 aa11.26□□□□□ -0.61
NUP98-208ENST00000461047 C19orf67A6NJJ6 358 aa11.24□□□□□ -0.61
NUP98-208ENST00000461047 PLEKHG5O94827 1062 aa11.21□□□□□ -0.61
NUP98-208ENST00000461047 EVX2Q03828 476 aa11.2□□□□□ -0.62
NUP98-208ENST00000461047 NPM1P06748 294 aaKnown RBP eCLIP11.19□□□□□ -0.62
NUP98-208ENST00000461047 CD44P16070 742 aaKnown RBP11.19□□□□□ -0.62
NUP98-208ENST00000461047 MIER1Q8N108 512 aa11.15□□□□□ -0.62
NUP98-208ENST00000461047 PAK3O75914 559 aaPredicted RBP11.13□□□□□ -0.63
NUP98-208ENST00000461047 PLCD3Q8N3E9 789 aa11.12□□□□□ -0.63
NUP98-208ENST00000461047 FBXO3Q9UK99 471 aa11.11□□□□□ -0.63
NUP98-208ENST00000461047 ZRANB1Q9UGI0 708 aa11.08□□□□□ -0.64
NUP98-208ENST00000461047 MNX1P50219 401 aaPredicted RBP11.05□□□□□ -0.64
NUP98-208ENST00000461047 GABBR2O75899 941 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms