RNA–Protein interactions for RNA: ENST00000457863.1

HMGB3P30-201, Transcript of high mobility group box 3 pseudogene 30, humanhuman

BASIC

Gene HMGB3P30, Length 606 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P30-201ENST00000457863 AEBP2Q6ZN18 517 aaPredicted RBP18.25■□□□□ 0.51
HMGB3P30-201ENST00000457863 CHIC1Q5VXU3 224 aa17.48■□□□□ 0.39
HMGB3P30-201ENST00000457863 SENP3Q9H4L4 574 aaPredicted RBP15.59■□□□□ 0.09
HMGB3P30-201ENST00000457863 PHF23Q9BUL5 403 aaPredicted RBP15.35■□□□□ 0.05
HMGB3P30-201ENST00000457863 FOXD1Q16676 465 aa14.47□□□□□ -0.09
HMGB3P30-201ENST00000457863 PLPPR3Q6T4P5 718 aa14.02□□□□□ -0.17
HMGB3P30-201ENST00000457863 PPP6R1Q9UPN7 881 aa13.6□□□□□ -0.23
HMGB3P30-201ENST00000457863 PIAS4Q8N2W9 510 aaPredicted RBP13.55□□□□□ -0.24
HMGB3P30-201ENST00000457863 MSH5O43196 834 aa13.54□□□□□ -0.24
HMGB3P30-201ENST00000457863 ADRA2BP18089 450 aa13.54□□□□□ -0.24
HMGB3P30-201ENST00000457863 POTEDQ86YR6 584 aa12.97□□□□□ -0.33
HMGB3P30-201ENST00000457863 SCAF1Q9H7N4 1312 aaKnown RBP12.44□□□□□ -0.42
HMGB3P30-201ENST00000457863 MAPK8IP2Q13387 824 aaPredicted RBP12.39□□□□□ -0.43
HMGB3P30-201ENST00000457863 DMRT2Q9Y5R5 561 aa12.38□□□□□ -0.43
HMGB3P30-201ENST00000457863 PPP4R3CPQ6ZMV5 832 aa12.27□□□□□ -0.45
HMGB3P30-201ENST00000457863 CNKSR2Q8WXI2 1034 aa12.04□□□□□ -0.48
HMGB3P30-201ENST00000457863 HOXD11P31277 338 aaPredicted RBP11.99□□□□□ -0.49
HMGB3P30-201ENST00000457863 RNF216Q9NWF9 866 aaPredicted RBP11.92□□□□□ -0.5
HMGB3P30-201ENST00000457863 NCBP3Q53F19 620 aaKnown RBP11.86□□□□□ -0.51
HMGB3P30-201ENST00000457863 DCAF8L1A6NGE4 600 aa11.76□□□□□ -0.53
HMGB3P30-201ENST00000457863 NPM3O75607 178 aaKnown RBP11.68□□□□□ -0.54
HMGB3P30-201ENST00000457863 DNAJC5BQ9UF47 199 aa11.61□□□□□ -0.55
HMGB3P30-201ENST00000457863 RNF39Q9H2S5 420 aa11.56□□□□□ -0.56
HMGB3P30-201ENST00000457863 KCNA4P22459 653 aa11.55□□□□□ -0.56
HMGB3P30-201ENST00000457863 CACNB1Q02641 598 aaPredicted RBP11.48□□□□□ -0.57
HMGB3P30-201ENST00000457863 C1QBPQ07021 282 aaKnown RBP11.41□□□□□ -0.58
HMGB3P30-201ENST00000457863 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.35□□□□□ -0.59
HMGB3P30-201ENST00000457863 U3KPZ7 1027 aaPredicted RBP11.16□□□□□ -0.62
HMGB3P30-201ENST00000457863 SLC4A2P04920 1241 aa11.12□□□□□ -0.63
HMGB3P30-201ENST00000457863 SPINK5Q9NQ38 1064 aaPredicted RBP10.93□□□□□ -0.66
HMGB3P30-201ENST00000457863 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.92□□□□□ -0.66
HMGB3P30-201ENST00000457863 HNRNPUL2Q1KMD3 747 aaKnown RBP10.92□□□□□ -0.66
HMGB3P30-201ENST00000457863 SLC4A1APQ9BWU0 796 aaKnown RBP10.92□□□□□ -0.66
HMGB3P30-201ENST00000457863 APLP2Q06481 763 aa10.9□□□□□ -0.66
HMGB3P30-201ENST00000457863 CAPN15O75808 1086 aa10.89□□□□□ -0.67
HMGB3P30-201ENST00000457863 SAMD1Q6SPF0 538 aaPredicted RBP10.86□□□□□ -0.67
HMGB3P30-201ENST00000457863 DSG3P32926 999 aa10.85□□□□□ -0.67
HMGB3P30-201ENST00000457863 MYCNP04198 464 aaPredicted RBP10.83□□□□□ -0.68
HMGB3P30-201ENST00000457863 ZNF219Q9P2Y4 722 aaPredicted RBP10.81□□□□□ -0.68
HMGB3P30-201ENST00000457863 FOXD4L1Q9NU39 408 aa10.78□□□□□ -0.68
HMGB3P30-201ENST00000457863 TRHP20396 242 aaPredicted RBP10.73□□□□□ -0.69
HMGB3P30-201ENST00000457863 ABCB7O75027 752 aa10.64□□□□□ -0.71
HMGB3P30-201ENST00000457863 ZBTB22O15209 634 aa10.63□□□□□ -0.71
HMGB3P30-201ENST00000457863 ATF5Q9Y2D1 282 aaPredicted RBP10.51□□□□□ -0.73
HMGB3P30-201ENST00000457863 POLA2Q14181 598 aa10.49□□□□□ -0.73
HMGB3P30-201ENST00000457863 ATXN8OSP0DMR3 200 aa10.46□□□□□ -0.73
HMGB3P30-201ENST00000457863 RBM42Q9BTD8 480 aaKnown RBP10.38□□□□□ -0.75
HMGB3P30-201ENST00000457863 ZBTB12Q9Y330 459 aaPredicted RBP10.38□□□□□ -0.75
HMGB3P30-201ENST00000457863 CSRNP3Q8WYN3 585 aa10.24□□□□□ -0.77
HMGB3P30-201ENST00000457863 POTEHQ6S545 545 aa10.19□□□□□ -0.78
HMGB3P30-201ENST00000457863 OSCARQ8IYS5 282 aa10.18□□□□□ -0.78
HMGB3P30-201ENST00000457863 AKT1S1Q96B36 256 aa10.15□□□□□ -0.78
HMGB3P30-201ENST00000457863 FBLN2P98095 1184 aa10.12□□□□□ -0.79
HMGB3P30-201ENST00000457863 EHMT2Q96KQ7 1210 aa10.12□□□□□ -0.79
HMGB3P30-201ENST00000457863 CHRDL2Q6WN34 429 aa10.07□□□□□ -0.8
HMGB3P30-201ENST00000457863 MKRN4PQ13434 485 aaPredicted RBP10.06□□□□□ -0.8
HMGB3P30-201ENST00000457863 SPDYE2BA6NHP3 402 aa10.05□□□□□ -0.8
HMGB3P30-201ENST00000457863 SPDYE6P0CI01 402 aa10.05□□□□□ -0.8
HMGB3P30-201ENST00000457863 SPDYE2Q495Y8 402 aa10.05□□□□□ -0.8
HMGB3P30-201ENST00000457863 REM2Q8IYK8 340 aaPredicted RBP10.03□□□□□ -0.8
HMGB3P30-201ENST00000457863 SSUH2Q9Y2M2 353 aa9.94□□□□□ -0.82
HMGB3P30-201ENST00000457863 PITPNM1O00562 1244 aa9.92□□□□□ -0.82
HMGB3P30-201ENST00000457863 ZNF692Q9BU19 519 aaPredicted RBP9.88□□□□□ -0.83
HMGB3P30-201ENST00000457863 PIP4P2Q8N4L2 257 aa9.85□□□□□ -0.83
HMGB3P30-201ENST00000457863 FXR2P51116 673 aaKnown RBP eCLIP9.83□□□□□ -0.84
HMGB3P30-201ENST00000457863 SPDYE1Q8NFV5 336 aaPredicted RBP9.82□□□□□ -0.84
HMGB3P30-201ENST00000457863 PABPN1Q86U42 306 aaKnown RBP eCLIP9.75□□□□□ -0.85
HMGB3P30-201ENST00000457863 CLEC11AQ9Y240 323 aa9.73□□□□□ -0.85
HMGB3P30-201ENST00000457863 PRKAR2AP13861 404 aaKnown RBP9.65□□□□□ -0.86
HMGB3P30-201ENST00000457863 SPDYE4A6NLX3 237 aa9.64□□□□□ -0.87
HMGB3P30-201ENST00000457863 SP7Q8TDD2 431 aaPredicted RBP9.62□□□□□ -0.87
HMGB3P30-201ENST00000457863 PRR29P0C7W0 189 aa9.61□□□□□ -0.87
HMGB3P30-201ENST00000457863 HAX1O00165 279 aa9.59□□□□□ -0.87
HMGB3P30-201ENST00000457863 STAG3Q9UJ98 1225 aa9.55□□□□□ -0.88
HMGB3P30-201ENST00000457863 CHADLQ6NUI6 762 aa9.54□□□□□ -0.88
HMGB3P30-201ENST00000457863 C19orf67A6NJJ6 358 aa9.51□□□□□ -0.89
HMGB3P30-201ENST00000457863 PROM2Q8N271 834 aa9.5□□□□□ -0.89
HMGB3P30-201ENST00000457863 EVX2Q03828 476 aa9.48□□□□□ -0.89
HMGB3P30-201ENST00000457863 FARP1Q9Y4F1 1045 aaPredicted RBP9.45□□□□□ -0.9
HMGB3P30-201ENST00000457863 CREBZFQ9NS37 354 aa9.43□□□□□ -0.9
HMGB3P30-201ENST00000457863 CD44P16070 742 aaKnown RBP9.36□□□□□ -0.91
HMGB3P30-201ENST00000457863 GABBR2O75899 941 aa9.31□□□□□ -0.92
HMGB3P30-201ENST00000457863 MNX1P50219 401 aaPredicted RBP9.31□□□□□ -0.92
HMGB3P30-201ENST00000457863 CLCN6P51797 869 aa9.28□□□□□ -0.92
HMGB3P30-201ENST00000457863 ZNF579Q8NAF0 562 aaKnown RBP9.27□□□□□ -0.93
HMGB3P30-201ENST00000457863 NPM1P06748 294 aaKnown RBP eCLIP9.26□□□□□ -0.93
HMGB3P30-201ENST00000457863 FKBP8Q14318 412 aa9.26□□□□□ -0.93
HMGB3P30-201ENST00000457863 ZRANB1Q9UGI0 708 aa9.23□□□□□ -0.93
HMGB3P30-201ENST00000457863 PAK3O75914 559 aaPredicted RBP9.21□□□□□ -0.94
HMGB3P30-201ENST00000457863 PLEKHG5O94827 1062 aa9.17□□□□□ -0.94
HMGB3P30-201ENST00000457863 MIER1Q8N108 512 aa9.13□□□□□ -0.95
HMGB3P30-201ENST00000457863 POTEIP0CG38 1075 aa9.12□□□□□ -0.95
HMGB3P30-201ENST00000457863 PHF12Q96QT6 1004 aa9.11□□□□□ -0.95
HMGB3P30-201ENST00000457863 GALR2O43603 387 aaPredicted RBP9.1□□□□□ -0.95
HMGB3P30-201ENST00000457863 PLCD3Q8N3E9 789 aa9.09□□□□□ -0.95
HMGB3P30-201ENST00000457863 ZBTB47Q9UFB7 747 aaPredicted RBP9.09□□□□□ -0.95
HMGB3P30-201ENST00000457863 FBXO3Q9UK99 471 aa9.08□□□□□ -0.96
HMGB3P30-201ENST00000457863 DCBLD2Q96PD2 775 aa9.07□□□□□ -0.96
HMGB3P30-201ENST00000457863 CCDC61Q9Y6R9 512 aa9.07□□□□□ -0.96
HMGB3P30-201ENST00000457863 TSPYL2Q9H2G4 693 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms