RNA–Protein interactions for RNA: ENST00000457839.6

MBD1-210, Transcript of methyl-CpG binding domain protein 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MBD1, Length 2,473 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD1-210ENST00000457839 NISCHQ9Y2I1 1504 aa36.27■■■■□ 3.4
MBD1-210ENST00000457839 CCDC180Q9P1Z9 1646 aa31.28■■■□□ 2.6
MBD1-210ENST00000457839 ZCCHC6Q5VYS8 1495 aaKnown RBP30.49■■■□□ 2.47
MBD1-210ENST00000457839 DCAF8L2P0C7V8 631 aa30.33■■■□□ 2.45
MBD1-210ENST00000457839 SHROOM4Q9ULL8 1493 aa30.19■■■□□ 2.42
MBD1-210ENST00000457839 ABCC9O60706 1549 aa29.79■■■□□ 2.36
MBD1-210ENST00000457839 DCAF1Q9Y4B6 1507 aa29.77■■■□□ 2.36
MBD1-210ENST00000457839 MYO15BQ96JP2 1530 aa29.28■■■□□ 2.28
MBD1-210ENST00000457839 SUPT5HO00267 1087 aaKnown RBP29.16■■■□□ 2.26
MBD1-210ENST00000457839 NACADO15069 1562 aa29.15■■■□□ 2.26
MBD1-210ENST00000457839 SCRIBQ14160 1630 aa29.14■■■□□ 2.26
MBD1-210ENST00000457839 RB1CC1Q8TDY2 1594 aa28.89■■■□□ 2.21
MBD1-210ENST00000457839 UNC13AQ9UPW8 1703 aa28.4■■■□□ 2.14
MBD1-210ENST00000457839 CECR2Q9BXF3 1484 aa28.35■■■□□ 2.13
MBD1-210ENST00000457839 RSF1Q96T23 1441 aaPredicted RBP28.33■■■□□ 2.13
MBD1-210ENST00000457839 PABPN1Q86U42 306 aaKnown RBP eCLIP28.28■■■□□ 2.12
MBD1-210ENST00000457839 MROH2BQ7Z745 1585 aa28.14■■■□□ 2.1
MBD1-210ENST00000457839 BICRAQ9NZM4 1560 aa28.12■■■□□ 2.09
MBD1-210ENST00000457839 BAZ1AQ9NRL2 1556 aaPredicted RBP27.93■■■□□ 2.06
MBD1-210ENST00000457839 WIZO95785 1651 aa27.93■■■□□ 2.06
MBD1-210ENST00000457839 CHIC1Q5VXU3 224 aa27.9■■■□□ 2.06
MBD1-210ENST00000457839 SMARCA4P51532 1647 aa27.81■■■□□ 2.04
MBD1-210ENST00000457839 TOP2AP11388 1531 aaKnown RBP27.49■■□□□ 1.99
MBD1-210ENST00000457839 CCDC88BA6NC98 1476 aa27.35■■□□□ 1.97
MBD1-210ENST00000457839 ATAD2BQ9ULI0 1458 aa27.34■■□□□ 1.97
MBD1-210ENST00000457839 PEG3Q9GZU2 1588 aa27.34■■□□□ 1.97
MBD1-210ENST00000457839 SMARCA2P51531 1590 aa27.31■■□□□ 1.96
MBD1-210ENST00000457839 EIF4G1Q04637 1599 aaKnown RBP27.25■■□□□ 1.95
MBD1-210ENST00000457839 TRIM41Q8WV44 630 aa27.25■■□□□ 1.95
MBD1-210ENST00000457839 BAZ1BQ9UIG0 1483 aaKnown RBP27.21■■□□□ 1.95
MBD1-210ENST00000457839 LOC105371045A0A1W2PR82 267 aa27.02■■□□□ 1.92
MBD1-210ENST00000457839 NCAPD3P42695 1498 aa26.99■■□□□ 1.91
MBD1-210ENST00000457839 FAM9AQ8IZU1 332 aaPredicted RBP26.98■■□□□ 1.91
MBD1-210ENST00000457839 ABCC8Q09428 1581 aa26.96■■□□□ 1.91
MBD1-210ENST00000457839 HMGXB3Q12766 1538 aa26.9■■□□□ 1.9
MBD1-210ENST00000457839 CC2D2AQ9P2K1 1620 aa26.82■■□□□ 1.88
MBD1-210ENST00000457839 EHMT2Q96KQ7 1210 aa26.77■■□□□ 1.88
MBD1-210ENST00000457839 WRNQ14191 1432 aaPredicted RBP eCLIP26.64■■□□□ 1.85
MBD1-210ENST00000457839 SYNJ1O43426 1573 aa26.54■■□□□ 1.84
MBD1-210ENST00000457839 SOGA1O94964 1423 aa26.53■■□□□ 1.84
MBD1-210ENST00000457839 CFTRP13569 1480 aa26.5■■□□□ 1.83
MBD1-210ENST00000457839 RUSC2Q8N2Y8 1516 aa26.45■■□□□ 1.82
MBD1-210ENST00000457839 DNAJC5BQ9UF47 199 aa26.44■■□□□ 1.82
MBD1-210ENST00000457839 CADPSQ9ULU8 1353 aa26.4■■□□□ 1.82
MBD1-210ENST00000457839 TOP2BQ02880 1626 aa26.29■■□□□ 1.8
MBD1-210ENST00000457839 CSRNP3Q8WYN3 585 aa26.29■■□□□ 1.8
MBD1-210ENST00000457839 CUX1P39880 1505 aa26.26■■□□□ 1.79
MBD1-210ENST00000457839 NESP48681 1621 aa26.25■■□□□ 1.79
MBD1-210ENST00000457839 EEA1Q15075 1411 aa26.21■■□□□ 1.79
MBD1-210ENST00000457839 BIVM-ERCC5R4GMW8 1640 aa26.2■■□□□ 1.79
MBD1-210ENST00000457839 PRDM2Q13029 1718 aa26.2■■□□□ 1.78
MBD1-210ENST00000457839 FANCD2Q9BXW9 1451 aa26.13■■□□□ 1.77
MBD1-210ENST00000457839 UBTFP17480 764 aaKnown RBP26.1■■□□□ 1.77
MBD1-210ENST00000457839 PCGF6Q9BYE7 350 aa26.03■■□□□ 1.76
MBD1-210ENST00000457839 GOLGA3Q08378 1498 aa25.99■■□□□ 1.75
MBD1-210ENST00000457839 LAMC3Q9Y6N6 1575 aa25.98■■□□□ 1.75
MBD1-210ENST00000457839 TNIKQ9UKE5 1360 aa25.96■■□□□ 1.75
MBD1-210ENST00000457839 CEP164Q9UPV0 1460 aa25.95■■□□□ 1.74
MBD1-210ENST00000457839 FGD5Q6ZNL6 1462 aa25.94■■□□□ 1.74
MBD1-210ENST00000457839 CEP162Q5TB80 1403 aa25.94■■□□□ 1.74
MBD1-210ENST00000457839 RAPGEF2Q9Y4G8 1499 aa25.93■■□□□ 1.74
MBD1-210ENST00000457839 KIF27Q86VH2 1401 aa25.9■■□□□ 1.74
MBD1-210ENST00000457839 KIF21BO75037 1637 aa25.9■■□□□ 1.74
MBD1-210ENST00000457839 PPARGC1BQ86YN6 1023 aaKnown RBP25.87■■□□□ 1.73
MBD1-210ENST00000457839 CUX2O14529 1486 aa25.86■■□□□ 1.73
MBD1-210ENST00000457839 TOPBP1Q92547 1522 aa25.85■■□□□ 1.73
MBD1-210ENST00000457839 PDS5BQ9NTI5 1447 aa25.85■■□□□ 1.73
MBD1-210ENST00000457839 RANGAP1P46060 587 aaPredicted RBP25.83■■□□□ 1.73
MBD1-210ENST00000457839 DNMBPQ6XZF7 1577 aa25.83■■□□□ 1.73
MBD1-210ENST00000457839 RAD54L2Q9Y4B4 1467 aa25.81■■□□□ 1.72
MBD1-210ENST00000457839 URB2Q14146 1524 aaKnown RBP25.8■■□□□ 1.72
MBD1-210ENST00000457839 PRXQ9BXM0 1461 aa25.78■■□□□ 1.72
MBD1-210ENST00000457839 KIF21AQ7Z4S6 1674 aa25.78■■□□□ 1.72
MBD1-210ENST00000457839 POLA1P09884 1462 aaPredicted RBP25.78■■□□□ 1.72
MBD1-210ENST00000457839 TRIM26Q12899 539 aaPredicted RBP25.75■■□□□ 1.71
MBD1-210ENST00000457839 IGF1RP08069 1367 aa25.72■■□□□ 1.71
MBD1-210ENST00000457839 CLIP1P30622 1438 aa25.66■■□□□ 1.7
MBD1-210ENST00000457839 ERICH3Q5RHP9 1530 aa25.66■■□□□ 1.7
MBD1-210ENST00000457839 TTBK1Q5TCY1 1321 aaPredicted RBP25.64■■□□□ 1.69
MBD1-210ENST00000457839 ABCA10Q8WWZ4 1543 aa25.62■■□□□ 1.69
MBD1-210ENST00000457839 CARMIL1Q5VZK9 1371 aa25.59■■□□□ 1.69
MBD1-210ENST00000457839 TDRD9Q8NDG6 1382 aaKnown RBP25.57■■□□□ 1.68
MBD1-210ENST00000457839 MRC2Q9UBG0 1479 aa25.5■■□□□ 1.67
MBD1-210ENST00000457839 WDR97A6NE52 1622 aa25.45■■□□□ 1.67
MBD1-210ENST00000457839 ERCC6Q03468 1493 aa25.44■■□□□ 1.66
MBD1-210ENST00000457839 VPS8Q8N3P4 1428 aa25.42■■□□□ 1.66
MBD1-210ENST00000457839 GAPVD1Q14C86 1478 aa25.4■■□□□ 1.66
MBD1-210ENST00000457839 TARBP1Q13395 1621 aaKnown RBP25.4■■□□□ 1.66
MBD1-210ENST00000457839 ABCA5Q8WWZ7 1642 aa25.37■■□□□ 1.65
MBD1-210ENST00000457839 ARAP1Q96P48 1450 aa25.36■■□□□ 1.65
MBD1-210ENST00000457839 AQRO60306 1485 aaKnown RBP eCLIP25.34■■□□□ 1.656e-7■■■□□ 18.9
MBD1-210ENST00000457839 HRCP23327 699 aa25.32■■□□□ 1.64
MBD1-210ENST00000457839 ARHGAP35Q9NRY4 1499 aa25.32■■□□□ 1.64
MBD1-210ENST00000457839 WDR62O43379 1518 aa25.32■■□□□ 1.64
MBD1-210ENST00000457839 CUL7Q14999 1698 aa25.3■■□□□ 1.64
MBD1-210ENST00000457839 APLP2Q06481 763 aa25.27■■□□□ 1.64
MBD1-210ENST00000457839 ZNF608Q9ULD9 1512 aaPredicted RBP25.26■■□□□ 1.64
MBD1-210ENST00000457839 P3H3Q8IVL6 736 aa25.25■■□□□ 1.63
MBD1-210ENST00000457839 THOC2Q8NI27 1593 aaKnown RBP25.21■■□□□ 1.63
MBD1-210ENST00000457839 IFT140Q96RY7 1462 aa25.2■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms