RNA–Protein interactions for RNA: ENST00000444712.5

SNX13-204, Transcript of sorting nexin 13, humanhuman

TSL 5

Gene SNX13, Length 2,018 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-204ENST00000444712 NISCHQ9Y2I1 1504 aa34.74■■■■□ 3.15
SNX13-204ENST00000444712 CCDC180Q9P1Z9 1646 aa30.27■■■□□ 2.44
SNX13-204ENST00000444712 ZCCHC6Q5VYS8 1495 aaKnown RBP29.27■■■□□ 2.28
SNX13-204ENST00000444712 DCAF1Q9Y4B6 1507 aa28.8■■■□□ 2.2
SNX13-204ENST00000444712 DCAF8L2P0C7V8 631 aa28.45■■■□□ 2.15
SNX13-204ENST00000444712 SHROOM4Q9ULL8 1493 aa28.45■■■□□ 2.14
SNX13-204ENST00000444712 MYO15BQ96JP2 1530 aa28.35■■■□□ 2.13
SNX13-204ENST00000444712 ABCC9O60706 1549 aa28.13■■■□□ 2.09
SNX13-204ENST00000444712 NACADO15069 1562 aa28.06■■■□□ 2.08
SNX13-204ENST00000444712 SCRIBQ14160 1630 aa27.76■■■□□ 2.03
SNX13-204ENST00000444712 RB1CC1Q8TDY2 1594 aa27.74■■■□□ 2.03
SNX13-204ENST00000444712 SUPT5HO00267 1087 aaKnown RBP27.55■■■□□ 2
SNX13-204ENST00000444712 UNC13AQ9UPW8 1703 aa27.21■■□□□ 1.95
SNX13-204ENST00000444712 RSF1Q96T23 1441 aaPredicted RBP27.03■■□□□ 1.92
SNX13-204ENST00000444712 CECR2Q9BXF3 1484 aa26.88■■□□□ 1.89
SNX13-204ENST00000444712 BAZ1AQ9NRL2 1556 aaPredicted RBP26.85■■□□□ 1.89
SNX13-204ENST00000444712 BICRAQ9NZM4 1560 aa26.82■■□□□ 1.88
SNX13-204ENST00000444712 MROH2BQ7Z745 1585 aa26.81■■□□□ 1.88
SNX13-204ENST00000444712 SMARCA4P51532 1647 aa26.67■■□□□ 1.86
SNX13-204ENST00000444712 WIZO95785 1651 aa26.65■■□□□ 1.86
SNX13-204ENST00000444712 CHIC1Q5VXU3 224 aa26.58■■□□□ 1.85
SNX13-204ENST00000444712 PABPN1Q86U42 306 aaKnown RBP eCLIP26.51■■□□□ 1.83
SNX13-204ENST00000444712 TOP2AP11388 1531 aaKnown RBP26.43■■□□□ 1.82
SNX13-204ENST00000444712 PEG3Q9GZU2 1588 aa26.35■■□□□ 1.81
SNX13-204ENST00000444712 SMARCA2P51531 1590 aa26.17■■□□□ 1.78
SNX13-204ENST00000444712 EIF4G1Q04637 1599 aaKnown RBP26.1■■□□□ 1.77
SNX13-204ENST00000444712 ATAD2BQ9ULI0 1458 aa26.09■■□□□ 1.77
SNX13-204ENST00000444712 CCDC88BA6NC98 1476 aa26.09■■□□□ 1.77
SNX13-204ENST00000444712 BAZ1BQ9UIG0 1483 aaKnown RBP26■■□□□ 1.75
SNX13-204ENST00000444712 TRIM41Q8WV44 630 aa25.95■■□□□ 1.74
SNX13-204ENST00000444712 HMGXB3Q12766 1538 aa25.89■■□□□ 1.73
SNX13-204ENST00000444712 NCAPD3P42695 1498 aa25.83■■□□□ 1.72
SNX13-204ENST00000444712 ABCC8Q09428 1581 aa25.64■■□□□ 1.7
SNX13-204ENST00000444712 CC2D2AQ9P2K1 1620 aa25.53■■□□□ 1.68
SNX13-204ENST00000444712 LOC105371045A0A1W2PR82 267 aa25.51■■□□□ 1.67
SNX13-204ENST00000444712 WRNQ14191 1432 aaPredicted RBP eCLIP25.47■■□□□ 1.67
SNX13-204ENST00000444712 PRDM2Q13029 1718 aa25.42■■□□□ 1.66
SNX13-204ENST00000444712 FAM9AQ8IZU1 332 aaPredicted RBP25.39■■□□□ 1.66
SNX13-204ENST00000444712 EEA1Q15075 1411 aa25.38■■□□□ 1.65
SNX13-204ENST00000444712 SYNJ1O43426 1573 aa25.35■■□□□ 1.65
SNX13-204ENST00000444712 CFTRP13569 1480 aa25.35■■□□□ 1.65
SNX13-204ENST00000444712 BIVM-ERCC5R4GMW8 1640 aa25.28■■□□□ 1.64
SNX13-204ENST00000444712 TOP2BQ02880 1626 aa25.28■■□□□ 1.64
SNX13-204ENST00000444712 SOGA1O94964 1423 aa25.19■■□□□ 1.62
SNX13-204ENST00000444712 CADPSQ9ULU8 1353 aa25.17■■□□□ 1.62
SNX13-204ENST00000444712 CSRNP3Q8WYN3 585 aa25.08■■□□□ 1.61
SNX13-204ENST00000444712 CUX1P39880 1505 aa25.06■■□□□ 1.6
SNX13-204ENST00000444712 RUSC2Q8N2Y8 1516 aa25.06■■□□□ 1.6
SNX13-204ENST00000444712 KIF21BO75037 1637 aa25.02■■□□□ 1.6
SNX13-204ENST00000444712 GOLGA3Q08378 1498 aa25■■□□□ 1.59
SNX13-204ENST00000444712 CEP164Q9UPV0 1460 aa24.97■■□□□ 1.59
SNX13-204ENST00000444712 LAMC3Q9Y6N6 1575 aa24.97■■□□□ 1.59
SNX13-204ENST00000444712 EHMT2Q96KQ7 1210 aa24.96■■□□□ 1.59
SNX13-204ENST00000444712 TNIKQ9UKE5 1360 aa24.95■■□□□ 1.59
SNX13-204ENST00000444712 FANCD2Q9BXW9 1451 aa24.91■■□□□ 1.58
SNX13-204ENST00000444712 CEP162Q5TB80 1403 aa24.83■■□□□ 1.56
SNX13-204ENST00000444712 KIF27Q86VH2 1401 aa24.83■■□□□ 1.56
SNX13-204ENST00000444712 DNMBPQ6XZF7 1577 aa24.81■■□□□ 1.56
SNX13-204ENST00000444712 ERICH3Q5RHP9 1530 aa24.79■■□□□ 1.56
SNX13-204ENST00000444712 UBTFP17480 764 aaKnown RBP24.79■■□□□ 1.56
SNX13-204ENST00000444712 NESP48681 1621 aa24.78■■□□□ 1.56
SNX13-204ENST00000444712 TRIM26Q12899 539 aaPredicted RBP24.76■■□□□ 1.55
SNX13-204ENST00000444712 PCGF6Q9BYE7 350 aa24.75■■□□□ 1.55
SNX13-204ENST00000444712 FGD5Q6ZNL6 1462 aa24.75■■□□□ 1.55
SNX13-204ENST00000444712 PDS5BQ9NTI5 1447 aa24.72■■□□□ 1.55
SNX13-204ENST00000444712 PRXQ9BXM0 1461 aa24.71■■□□□ 1.55
SNX13-204ENST00000444712 RAPGEF2Q9Y4G8 1499 aa24.7■■□□□ 1.54
SNX13-204ENST00000444712 TOPBP1Q92547 1522 aa24.68■■□□□ 1.54
SNX13-204ENST00000444712 CUX2O14529 1486 aa24.64■■□□□ 1.54
SNX13-204ENST00000444712 KIF21AQ7Z4S6 1674 aa24.61■■□□□ 1.53
SNX13-204ENST00000444712 POLA1P09884 1462 aaPredicted RBP24.58■■□□□ 1.53
SNX13-204ENST00000444712 CLIP1P30622 1438 aa24.57■■□□□ 1.52
SNX13-204ENST00000444712 ABCA10Q8WWZ4 1543 aa24.57■■□□□ 1.52
SNX13-204ENST00000444712 URB2Q14146 1524 aaKnown RBP24.55■■□□□ 1.52
SNX13-204ENST00000444712 DNAJC5BQ9UF47 199 aa24.53■■□□□ 1.52
SNX13-204ENST00000444712 WDR97A6NE52 1622 aa24.52■■□□□ 1.52
SNX13-204ENST00000444712 IGF1RP08069 1367 aa24.49■■□□□ 1.51
SNX13-204ENST00000444712 RAD54L2Q9Y4B4 1467 aa24.45■■□□□ 1.5
SNX13-204ENST00000444712 CUL7Q14999 1698 aa24.44■■□□□ 1.5
SNX13-204ENST00000444712 VPS8Q8N3P4 1428 aa24.42■■□□□ 1.5
SNX13-204ENST00000444712 CARMIL1Q5VZK9 1371 aa24.41■■□□□ 1.5
SNX13-204ENST00000444712 MRC2Q9UBG0 1479 aa24.38■■□□□ 1.49
SNX13-204ENST00000444712 ABCA5Q8WWZ7 1642 aa24.37■■□□□ 1.49
SNX13-204ENST00000444712 HRCP23327 699 aa24.37■■□□□ 1.49
SNX13-204ENST00000444712 TARBP1Q13395 1621 aaKnown RBP24.31■■□□□ 1.48
SNX13-204ENST00000444712 ARAP1Q96P48 1450 aa24.26■■□□□ 1.47
SNX13-204ENST00000444712 GAPVD1Q14C86 1478 aa24.25■■□□□ 1.47
SNX13-204ENST00000444712 PPARGC1BQ86YN6 1023 aaKnown RBP24.25■■□□□ 1.47
SNX13-204ENST00000444712 WDR62O43379 1518 aa24.25■■□□□ 1.47
SNX13-204ENST00000444712 CTTNBP2Q8WZ74 1663 aa24.24■■□□□ 1.47
SNX13-204ENST00000444712 APLP2Q06481 763 aa24.21■■□□□ 1.47
SNX13-204ENST00000444712 ARHGAP35Q9NRY4 1499 aa24.2■■□□□ 1.47
SNX13-204ENST00000444712 RANGAP1P46060 587 aaPredicted RBP24.19■■□□□ 1.46
SNX13-204ENST00000444712 PBRM1Q86U86 1689 aa24.19■■□□□ 1.46
SNX13-204ENST00000444712 TDRD9Q8NDG6 1382 aaKnown RBP24.16■■□□□ 1.46
SNX13-204ENST00000444712 ERCC6Q03468 1493 aa24.14■■□□□ 1.46
SNX13-204ENST00000444712 IFT140Q96RY7 1462 aa24.14■■□□□ 1.45
SNX13-204ENST00000444712 EFCAB5A4FU69 1503 aa24.11■■□□□ 1.45
SNX13-204ENST00000444712 THOC2Q8NI27 1593 aaKnown RBP24.1■■□□□ 1.45
SNX13-204ENST00000444712 GRIN2BQ13224 1484 aa24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms