RNA–Protein interactions for RNA: ENST00000443537.2

R3HDM1-210, Transcript of R3H domain containing 1, humanhuman

TSL 3

Gene R3HDM1, Length 710 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-210ENST00000443537 AEBP2Q6ZN18 517 aaPredicted RBP24.12■■□□□ 1.45
R3HDM1-210ENST00000443537 CHIC1Q5VXU3 224 aa23.88■■□□□ 1.41
R3HDM1-210ENST00000443537 PHF23Q9BUL5 403 aaPredicted RBP21.01■□□□□ 0.95
R3HDM1-210ENST00000443537 SENP3Q9H4L4 574 aaPredicted RBP20.47■□□□□ 0.87
R3HDM1-210ENST00000443537 PLPPR3Q6T4P5 718 aa19.57■□□□□ 0.72
R3HDM1-210ENST00000443537 FOXD1Q16676 465 aa18.94■□□□□ 0.62
R3HDM1-210ENST00000443537 ADRA2BP18089 450 aa18.5■□□□□ 0.55
R3HDM1-210ENST00000443537 PPP6R1Q9UPN7 881 aa18.45■□□□□ 0.54
R3HDM1-210ENST00000443537 PIAS4Q8N2W9 510 aaPredicted RBP18■□□□□ 0.47
R3HDM1-210ENST00000443537 MSH5O43196 834 aa17.37■□□□□ 0.37
R3HDM1-210ENST00000443537 PPP4R3CPQ6ZMV5 832 aa17.29■□□□□ 0.36
R3HDM1-210ENST00000443537 KCNA4P22459 653 aa17.23■□□□□ 0.35
R3HDM1-210ENST00000443537 SCAF1Q9H7N4 1312 aaKnown RBP16.97■□□□□ 0.31
R3HDM1-210ENST00000443537 NCBP3Q53F19 620 aaKnown RBP16.97■□□□□ 0.31
R3HDM1-210ENST00000443537 CNKSR2Q8WXI2 1034 aa16.73■□□□□ 0.27
R3HDM1-210ENST00000443537 MAPK8IP2Q13387 824 aaPredicted RBP16.68■□□□□ 0.26
R3HDM1-210ENST00000443537 NPM3O75607 178 aaKnown RBP16.65■□□□□ 0.26
R3HDM1-210ENST00000443537 SLC4A1APQ9BWU0 796 aaKnown RBP16.51■□□□□ 0.23
R3HDM1-210ENST00000443537 NISCHQ9Y2I1 1504 aa16.47■□□□□ 0.23
R3HDM1-210ENST00000443537 EHMT2Q96KQ7 1210 aa16.44■□□□□ 0.22
R3HDM1-210ENST00000443537 DMRT2Q9Y5R5 561 aa16.36■□□□□ 0.21
R3HDM1-210ENST00000443537 RNF216Q9NWF9 866 aaPredicted RBP16.31■□□□□ 0.2
R3HDM1-210ENST00000443537 HOXD11P31277 338 aaPredicted RBP16.12■□□□□ 0.17
R3HDM1-210ENST00000443537 CSRNP3Q8WYN3 585 aa16.01■□□□□ 0.15
R3HDM1-210ENST00000443537 DNAJC5BQ9UF47 199 aa16.01■□□□□ 0.15
R3HDM1-210ENST00000443537 ZBTB22O15209 634 aa15.82■□□□□ 0.12
R3HDM1-210ENST00000443537 DCAF8L1A6NGE4 600 aa15.79■□□□□ 0.12
R3HDM1-210ENST00000443537 FOXD4L1Q9NU39 408 aa15.78■□□□□ 0.12
R3HDM1-210ENST00000443537 SLC4A2P04920 1241 aa15.62■□□□□ 0.09
R3HDM1-210ENST00000443537 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.49■□□□□ 0.073e-7■□□□□ 8.6
R3HDM1-210ENST00000443537 MYCNP04198 464 aaPredicted RBP15.41■□□□□ 0.06
R3HDM1-210ENST00000443537 POTEDQ86YR6 584 aa15.25■□□□□ 0.03
R3HDM1-210ENST00000443537 U3KPZ7 1027 aaPredicted RBP15.19■□□□□ 0.02
R3HDM1-210ENST00000443537 ATXN8OSP0DMR3 200 aa15.18■□□□□ 0.02
R3HDM1-210ENST00000443537 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.16■□□□□ 0.02
R3HDM1-210ENST00000443537 HNRNPUL2Q1KMD3 747 aaKnown RBP15.16■□□□□ 0.02
R3HDM1-210ENST00000443537 SAMD1Q6SPF0 538 aaPredicted RBP15.11■□□□□ 0.01
R3HDM1-210ENST00000443537 APLP2Q06481 763 aa14.95□□□□□ -0.02
R3HDM1-210ENST00000443537 ATF5Q9Y2D1 282 aaPredicted RBP14.94□□□□□ -0.02
R3HDM1-210ENST00000443537 RNF39Q9H2S5 420 aa14.88□□□□□ -0.03
R3HDM1-210ENST00000443537 C1QBPQ07021 282 aaKnown RBP14.74□□□□□ -0.05
R3HDM1-210ENST00000443537 ZNF219Q9P2Y4 722 aaPredicted RBP14.72□□□□□ -0.05
R3HDM1-210ENST00000443537 CAPN15O75808 1086 aa14.69□□□□□ -0.06
R3HDM1-210ENST00000443537 TRHP20396 242 aaPredicted RBP14.69□□□□□ -0.06
R3HDM1-210ENST00000443537 SPINK5Q9NQ38 1064 aaPredicted RBP14.69□□□□□ -0.06
R3HDM1-210ENST00000443537 CCDC180Q9P1Z9 1646 aa14.63□□□□□ -0.07
R3HDM1-210ENST00000443537 FKBP8Q14318 412 aa14.52□□□□□ -0.09
R3HDM1-210ENST00000443537 POLA2Q14181 598 aa14.49□□□□□ -0.09
R3HDM1-210ENST00000443537 ABCB7O75027 752 aa14.43□□□□□ -0.1
R3HDM1-210ENST00000443537 FBLN2P98095 1184 aa14.38□□□□□ -0.11
R3HDM1-210ENST00000443537 CACNB1Q02641 598 aaPredicted RBP14.36□□□□□ -0.11
R3HDM1-210ENST00000443537 MKRN4PQ13434 485 aaPredicted RBP14.29□□□□□ -0.12
R3HDM1-210ENST00000443537 DSG3P32926 999 aa14.28□□□□□ -0.12
R3HDM1-210ENST00000443537 ZBTB12Q9Y330 459 aaPredicted RBP14.28□□□□□ -0.12
R3HDM1-210ENST00000443537 SPDYE4A6NLX3 237 aa14.2□□□□□ -0.14
R3HDM1-210ENST00000443537 OSCARQ8IYS5 282 aa13.98□□□□□ -0.17
R3HDM1-210ENST00000443537 ZNF692Q9BU19 519 aaPredicted RBP13.93□□□□□ -0.18
R3HDM1-210ENST00000443537 FBXO3Q9UK99 471 aa13.93□□□□□ -0.18
R3HDM1-210ENST00000443537 SPDYE2BA6NHP3 402 aa13.89□□□□□ -0.19
R3HDM1-210ENST00000443537 SPDYE6P0CI01 402 aa13.89□□□□□ -0.19
R3HDM1-210ENST00000443537 SPDYE2Q495Y8 402 aa13.89□□□□□ -0.19
R3HDM1-210ENST00000443537 PROM2Q8N271 834 aa13.89□□□□□ -0.19
R3HDM1-210ENST00000443537 ZCCHC6Q5VYS8 1495 aaKnown RBP13.82□□□□□ -0.2
R3HDM1-210ENST00000443537 AMER1Q5JTC6 1135 aaPredicted RBP13.78□□□□□ -0.2
R3HDM1-210ENST00000443537 SSUH2Q9Y2M2 353 aa13.77□□□□□ -0.21
R3HDM1-210ENST00000443537 DCAF1Q9Y4B6 1507 aa13.75□□□□□ -0.21
R3HDM1-210ENST00000443537 PABPN1Q86U42 306 aaKnown RBP eCLIP13.74□□□□□ -0.21
R3HDM1-210ENST00000443537 RTN4Q9NQC3 1192 aaKnown RBP13.73□□□□□ -0.21
R3HDM1-210ENST00000443537 ABCC9O60706 1549 aa13.71□□□□□ -0.21
R3HDM1-210ENST00000443537 MYO15BQ96JP2 1530 aa13.71□□□□□ -0.21
R3HDM1-210ENST00000443537 VASPP50552 380 aaPredicted RBP13.7□□□□□ -0.22
R3HDM1-210ENST00000443537 RBM42Q9BTD8 480 aaKnown RBP13.65□□□□□ -0.22
R3HDM1-210ENST00000443537 NACADO15069 1562 aa13.62□□□□□ -0.23
R3HDM1-210ENST00000443537 STAG3Q9UJ98 1225 aa13.59□□□□□ -0.23
R3HDM1-210ENST00000443537 AKT1S1Q96B36 256 aa13.52□□□□□ -0.25
R3HDM1-210ENST00000443537 RB1CC1Q8TDY2 1594 aa13.52□□□□□ -0.25
R3HDM1-210ENST00000443537 IFNLR1Q8IU57 520 aaPredicted RBP13.51□□□□□ -0.25
R3HDM1-210ENST00000443537 PLCD3Q8N3E9 789 aa13.51□□□□□ -0.25
R3HDM1-210ENST00000443537 KLHL34Q8N239 644 aa13.48□□□□□ -0.25
R3HDM1-210ENST00000443537 MIER1Q8N108 512 aa13.47□□□□□ -0.25
R3HDM1-210ENST00000443537 SPDYE1Q8NFV5 336 aaPredicted RBP13.44□□□□□ -0.26
R3HDM1-210ENST00000443537 DCAF8L2P0C7V8 631 aa13.42□□□□□ -0.26
R3HDM1-210ENST00000443537 PLEKHG5O94827 1062 aa13.41□□□□□ -0.26
R3HDM1-210ENST00000443537 CLEC11AQ9Y240 323 aa13.41□□□□□ -0.26
R3HDM1-210ENST00000443537 REM2Q8IYK8 340 aaPredicted RBP13.39□□□□□ -0.27
R3HDM1-210ENST00000443537 SPOCK2Q92563 424 aa13.35□□□□□ -0.27
R3HDM1-210ENST00000443537 PRR29P0C7W0 189 aa13.31□□□□□ -0.28
R3HDM1-210ENST00000443537 ZBTB47Q9UFB7 747 aaPredicted RBP13.3□□□□□ -0.28
R3HDM1-210ENST00000443537 PITPNM1O00562 1244 aa13.24□□□□□ -0.29
R3HDM1-210ENST00000443537 UNC13AQ9UPW8 1703 aa13.2□□□□□ -0.3
R3HDM1-210ENST00000443537 SCRIBQ14160 1630 aa13.2□□□□□ -0.3
R3HDM1-210ENST00000443537 PKD2Q13563 968 aa13.17□□□□□ -0.3
R3HDM1-210ENST00000443537 CREBZFQ9NS37 354 aa13.14□□□□□ -0.31
R3HDM1-210ENST00000443537 CIZ1Q9ULV3 898 aaPredicted RBP13.14□□□□□ -0.31
R3HDM1-210ENST00000443537 SHROOM4Q9ULL8 1493 aa13.1□□□□□ -0.31
R3HDM1-210ENST00000443537 ECM2O94769 699 aaPredicted RBP13.1□□□□□ -0.31
R3HDM1-210ENST00000443537 BICRAQ9NZM4 1560 aa13□□□□□ -0.33
R3HDM1-210ENST00000443537 NPM1P06748 294 aaKnown RBP eCLIP13□□□□□ -0.33
R3HDM1-210ENST00000443537 MNX1P50219 401 aaPredicted RBP13□□□□□ -0.33
R3HDM1-210ENST00000443537 NUBP1P53384 320 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 162.2 ms