RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 AEBP2Q6ZN18 517 aaPredicted RBP22.2■■□□□ 1.14
PTPN4-206ENST00000441089 CHIC1Q5VXU3 224 aa20.65■□□□□ 0.9
PTPN4-206ENST00000441089 SENP3Q9H4L4 574 aaPredicted RBP18.74■□□□□ 0.59
PTPN4-206ENST00000441089 PHF23Q9BUL5 403 aaPredicted RBP18.55■□□□□ 0.56
PTPN4-206ENST00000441089 FOXD1Q16676 465 aa17.66■□□□□ 0.42
PTPN4-206ENST00000441089 POTEDQ86YR6 584 aa16.72■□□□□ 0.27
PTPN4-206ENST00000441089 MSH5O43196 834 aa16.44■□□□□ 0.22
PTPN4-206ENST00000441089 PPP6R1Q9UPN7 881 aa16.37■□□□□ 0.21
PTPN4-206ENST00000441089 PIAS4Q8N2W9 510 aaPredicted RBP16.34■□□□□ 0.21
PTPN4-206ENST00000441089 PLPPR3Q6T4P5 718 aa16.26■□□□□ 0.19
PTPN4-206ENST00000441089 ADRA2BP18089 450 aa16.25■□□□□ 0.19
PTPN4-206ENST00000441089 MAPK8IP2Q13387 824 aaPredicted RBP15.05■□□□□ -0
PTPN4-206ENST00000441089 DMRT2Q9Y5R5 561 aa14.88□□□□□ -0.03
PTPN4-206ENST00000441089 SCAF1Q9H7N4 1312 aaKnown RBP14.58□□□□□ -0.08
PTPN4-206ENST00000441089 CACNB1Q02641 598 aaPredicted RBP14.34□□□□□ -0.11
PTPN4-206ENST00000441089 PPP4R3CPQ6ZMV5 832 aa14.3□□□□□ -0.12
PTPN4-206ENST00000441089 DCAF8L1A6NGE4 600 aa14.24□□□□□ -0.13
PTPN4-206ENST00000441089 HOXD11P31277 338 aaPredicted RBP14.22□□□□□ -0.13
PTPN4-206ENST00000441089 RNF39Q9H2S5 420 aa14.12□□□□□ -0.15
PTPN4-206ENST00000441089 CNKSR2Q8WXI2 1034 aa14.02□□□□□ -0.17
PTPN4-206ENST00000441089 RNF216Q9NWF9 866 aaPredicted RBP13.98□□□□□ -0.17
PTPN4-206ENST00000441089 C1QBPQ07021 282 aaKnown RBP13.79□□□□□ -0.2
PTPN4-206ENST00000441089 DNAJC5BQ9UF47 199 aa13.65□□□□□ -0.22
PTPN4-206ENST00000441089 NPM3O75607 178 aaKnown RBP13.51□□□□□ -0.25
PTPN4-206ENST00000441089 NCBP3Q53F19 620 aaKnown RBP13.49□□□□□ -0.25
PTPN4-206ENST00000441089 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.48□□□□□ -0.25
PTPN4-206ENST00000441089 U3KPZ7 1027 aaPredicted RBP13.29□□□□□ -0.28
PTPN4-206ENST00000441089 SPINK5Q9NQ38 1064 aaPredicted RBP13.23□□□□□ -0.29
PTPN4-206ENST00000441089 DSG3P32926 999 aa13.14□□□□□ -0.31
PTPN4-206ENST00000441089 CAPN15O75808 1086 aa13.08□□□□□ -0.32
PTPN4-206ENST00000441089 SLC4A2P04920 1241 aa13.04□□□□□ -0.32
PTPN4-206ENST00000441089 KCNA4P22459 653 aa13.04□□□□□ -0.32
PTPN4-206ENST00000441089 POTEHQ6S545 545 aa13□□□□□ -0.33
PTPN4-206ENST00000441089 ABCB7O75027 752 aa12.85□□□□□ -0.35
PTPN4-206ENST00000441089 TRHP20396 242 aaPredicted RBP12.83□□□□□ -0.36
PTPN4-206ENST00000441089 ZNF219Q9P2Y4 722 aaPredicted RBP12.69□□□□□ -0.38
PTPN4-206ENST00000441089 APLP2Q06481 763 aa12.57□□□□□ -0.4
PTPN4-206ENST00000441089 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.55□□□□□ -0.4
PTPN4-206ENST00000441089 HNRNPUL2Q1KMD3 747 aaKnown RBP12.55□□□□□ -0.4
PTPN4-206ENST00000441089 SAMD1Q6SPF0 538 aaPredicted RBP12.53□□□□□ -0.4
PTPN4-206ENST00000441089 POLA2Q14181 598 aa12.42□□□□□ -0.42
PTPN4-206ENST00000441089 MYCNP04198 464 aaPredicted RBP12.39□□□□□ -0.43
PTPN4-206ENST00000441089 RBM42Q9BTD8 480 aaKnown RBP12.36□□□□□ -0.43
PTPN4-206ENST00000441089 ATF5Q9Y2D1 282 aaPredicted RBP12.35□□□□□ -0.43
PTPN4-206ENST00000441089 CHRDL2Q6WN34 429 aa12.34□□□□□ -0.43
PTPN4-206ENST00000441089 SLC4A1APQ9BWU0 796 aaKnown RBP12.13□□□□□ -0.47
PTPN4-206ENST00000441089 FOXD4L1Q9NU39 408 aa12.13□□□□□ -0.47
PTPN4-206ENST00000441089 OSCARQ8IYS5 282 aa12.09□□□□□ -0.47
PTPN4-206ENST00000441089 AKT1S1Q96B36 256 aa12.09□□□□□ -0.47
PTPN4-206ENST00000441089 ZBTB22O15209 634 aa12.07□□□□□ -0.48
PTPN4-206ENST00000441089 REM2Q8IYK8 340 aaPredicted RBP12.05□□□□□ -0.48
PTPN4-206ENST00000441089 PIP4P2Q8N4L2 257 aa12.04□□□□□ -0.48
PTPN4-206ENST00000441089 SP7Q8TDD2 431 aaPredicted RBP12.03□□□□□ -0.48
PTPN4-206ENST00000441089 NISCHQ9Y2I1 1504 aa12□□□□□ -0.49
PTPN4-206ENST00000441089 PITPNM1O00562 1244 aa11.97□□□□□ -0.49
PTPN4-206ENST00000441089 ZBTB12Q9Y330 459 aaPredicted RBP11.97□□□□□ -0.49
PTPN4-206ENST00000441089 FXR2P51116 673 aaKnown RBP eCLIP11.89□□□□□ -0.51
PTPN4-206ENST00000441089 EVX2Q03828 476 aa11.86□□□□□ -0.51
PTPN4-206ENST00000441089 HAX1O00165 279 aa11.81□□□□□ -0.52
PTPN4-206ENST00000441089 MKRN4PQ13434 485 aaPredicted RBP11.73□□□□□ -0.53
PTPN4-206ENST00000441089 ATXN8OSP0DMR3 200 aa11.7□□□□□ -0.54
PTPN4-206ENST00000441089 SPDYE2BA6NHP3 402 aa11.67□□□□□ -0.54
PTPN4-206ENST00000441089 SPDYE6P0CI01 402 aa11.67□□□□□ -0.54
PTPN4-206ENST00000441089 SPDYE2Q495Y8 402 aa11.67□□□□□ -0.54
PTPN4-206ENST00000441089 PRKAR2AP13861 404 aaKnown RBP11.6□□□□□ -0.55
PTPN4-206ENST00000441089 FBLN2P98095 1184 aa11.59□□□□□ -0.55
PTPN4-206ENST00000441089 CLEC11AQ9Y240 323 aa11.58□□□□□ -0.56
PTPN4-206ENST00000441089 SSUH2Q9Y2M2 353 aa11.57□□□□□ -0.56
PTPN4-206ENST00000441089 ABCC9O60706 1549 aa11.52□□□□□ -0.57
PTPN4-206ENST00000441089 C19orf67A6NJJ6 358 aa11.52□□□□□ -0.57
PTPN4-206ENST00000441089 SPDYE1Q8NFV5 336 aaPredicted RBP11.52□□□□□ -0.57
PTPN4-206ENST00000441089 CHADLQ6NUI6 762 aa11.51□□□□□ -0.57
PTPN4-206ENST00000441089 ZNF692Q9BU19 519 aaPredicted RBP11.5□□□□□ -0.57
PTPN4-206ENST00000441089 GABBR2O75899 941 aa11.43□□□□□ -0.58
PTPN4-206ENST00000441089 PABPN1Q86U42 306 aaKnown RBP eCLIP11.37□□□□□ -0.59
PTPN4-206ENST00000441089 PRR29P0C7W0 189 aa11.3□□□□□ -0.6
PTPN4-206ENST00000441089 POTEIP0CG38 1075 aa11.3□□□□□ -0.6
PTPN4-206ENST00000441089 LHX8Q68G74 356 aa11.27□□□□□ -0.61
PTPN4-206ENST00000441089 CD44P16070 742 aaKnown RBP11.21□□□□□ -0.61
PTPN4-206ENST00000441089 FARP1Q9Y4F1 1045 aaPredicted RBP11.21□□□□□ -0.61
PTPN4-206ENST00000441089 CSRNP3Q8WYN3 585 aa11.17□□□□□ -0.62
PTPN4-206ENST00000441089 CCDC180Q9P1Z9 1646 aa11.09□□□□□ -0.63
PTPN4-206ENST00000441089 CREBZFQ9NS37 354 aa11.08□□□□□ -0.64
PTPN4-206ENST00000441089 ZNF579Q8NAF0 562 aaKnown RBP11.02□□□□□ -0.65
PTPN4-206ENST00000441089 GALR2O43603 387 aaPredicted RBP11□□□□□ -0.65
PTPN4-206ENST00000441089 ZRANB1Q9UGI0 708 aa11□□□□□ -0.65
PTPN4-206ENST00000441089 DCBLD2Q96PD2 775 aa10.95□□□□□ -0.66
PTPN4-206ENST00000441089 POTEB2H3BUK9 544 aa10.94□□□□□ -0.66
PTPN4-206ENST00000441089 PHF12Q96QT6 1004 aa10.92□□□□□ -0.66
PTPN4-206ENST00000441089 MNX1P50219 401 aaPredicted RBP10.9□□□□□ -0.66
PTPN4-206ENST00000441089 CLCN6P51797 869 aa10.9□□□□□ -0.66
PTPN4-206ENST00000441089 SPDYE4A6NLX3 237 aa10.88□□□□□ -0.67
PTPN4-206ENST00000441089 OTUD5Q96G74 571 aa10.88□□□□□ -0.67
PTPN4-206ENST00000441089 PELP1Q8IZL8 1130 aaKnown RBP10.86□□□□□ -0.67
PTPN4-206ENST00000441089 EHMT2Q96KQ7 1210 aa10.84□□□□□ -0.67
PTPN4-206ENST00000441089 STAG3Q9UJ98 1225 aa10.84□□□□□ -0.67
PTPN4-206ENST00000441089 DNAJC5Q9H3Z4 198 aa10.82□□□□□ -0.68
PTPN4-206ENST00000441089 RB1CC1Q8TDY2 1594 aa10.8□□□□□ -0.68
PTPN4-206ENST00000441089 PLSCR2Q9NRY7 297 aa10.79□□□□□ -0.68
PTPN4-206ENST00000441089 POTEJP0CG39 1038 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms