RNA–Protein interactions for RNA: ENST00000440664.5

LINC01549-201, Transcript of long intergenic non-protein coding RNA 1549, humanhuman

TSL 3 BASIC

Gene LINC01549, Length 714 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549-201ENST00000440664 AEBP2Q6ZN18 517 aaPredicted RBP23.4■■□□□ 1.34
LINC01549-201ENST00000440664 CHIC1Q5VXU3 224 aa21.92■■□□□ 1.1
LINC01549-201ENST00000440664 SENP3Q9H4L4 574 aaPredicted RBP20.18■□□□□ 0.82
LINC01549-201ENST00000440664 PHF23Q9BUL5 403 aaPredicted RBP19.75■□□□□ 0.75
LINC01549-201ENST00000440664 POTEDQ86YR6 584 aa19.4■□□□□ 0.7
LINC01549-201ENST00000440664 FOXD1Q16676 465 aa18.9■□□□□ 0.62
LINC01549-201ENST00000440664 MSH5O43196 834 aa18.12■□□□□ 0.49
LINC01549-201ENST00000440664 PIAS4Q8N2W9 510 aaPredicted RBP17.49■□□□□ 0.39
LINC01549-201ENST00000440664 PPP6R1Q9UPN7 881 aa16.87■□□□□ 0.29
LINC01549-201ENST00000440664 ADRA2BP18089 450 aa16.8■□□□□ 0.28
LINC01549-201ENST00000440664 PLPPR3Q6T4P5 718 aa16.54■□□□□ 0.24
LINC01549-201ENST00000440664 CACNB1Q02641 598 aaPredicted RBP16.23■□□□□ 0.19
LINC01549-201ENST00000440664 DMRT2Q9Y5R5 561 aa15.81■□□□□ 0.12
LINC01549-201ENST00000440664 MAPK8IP2Q13387 824 aaPredicted RBP15.73■□□□□ 0.11
LINC01549-201ENST00000440664 SCAF1Q9H7N4 1312 aaKnown RBP15.4■□□□□ 0.06
LINC01549-201ENST00000440664 DCAF8L1A6NGE4 600 aa15.37■□□□□ 0.05
LINC01549-201ENST00000440664 RNF39Q9H2S5 420 aa15.33■□□□□ 0.04
LINC01549-201ENST00000440664 C1QBPQ07021 282 aaKnown RBP15.06■□□□□ 0
LINC01549-201ENST00000440664 POTEHQ6S545 545 aa15.03■□□□□ -0
LINC01549-201ENST00000440664 HOXD11P31277 338 aaPredicted RBP14.79□□□□□ -0.04
LINC01549-201ENST00000440664 RNF216Q9NWF9 866 aaPredicted RBP14.44□□□□□ -0.1
LINC01549-201ENST00000440664 DNAJC5BQ9UF47 199 aa14.44□□□□□ -0.1
LINC01549-201ENST00000440664 PPP4R3CPQ6ZMV5 832 aa14.36□□□□□ -0.11
LINC01549-201ENST00000440664 CNKSR2Q8WXI2 1034 aa14.32□□□□□ -0.12
LINC01549-201ENST00000440664 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.22□□□□□ -0.13
LINC01549-201ENST00000440664 DSG3P32926 999 aa14.02□□□□□ -0.17
LINC01549-201ENST00000440664 CAPN15O75808 1086 aa13.95□□□□□ -0.18
LINC01549-201ENST00000440664 SPINK5Q9NQ38 1064 aaPredicted RBP13.86□□□□□ -0.19
LINC01549-201ENST00000440664 U3KPZ7 1027 aaPredicted RBP13.72□□□□□ -0.21
LINC01549-201ENST00000440664 SP7Q8TDD2 431 aaPredicted RBP13.6□□□□□ -0.23
LINC01549-201ENST00000440664 CHRDL2Q6WN34 429 aa13.57□□□□□ -0.24
LINC01549-201ENST00000440664 ABCB7O75027 752 aa13.53□□□□□ -0.24
LINC01549-201ENST00000440664 NCBP3Q53F19 620 aaKnown RBP13.53□□□□□ -0.24
LINC01549-201ENST00000440664 TRHP20396 242 aaPredicted RBP13.48□□□□□ -0.25
LINC01549-201ENST00000440664 RBM42Q9BTD8 480 aaKnown RBP13.45□□□□□ -0.26
LINC01549-201ENST00000440664 ZNF219Q9P2Y4 722 aaPredicted RBP13.37□□□□□ -0.27
LINC01549-201ENST00000440664 NPM3O75607 178 aaKnown RBP13.29□□□□□ -0.28
LINC01549-201ENST00000440664 APLP2Q06481 763 aa13.29□□□□□ -0.28
LINC01549-201ENST00000440664 HAX1O00165 279 aa13.11□□□□□ -0.31
LINC01549-201ENST00000440664 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.02□□□□□ -0.33
LINC01549-201ENST00000440664 HNRNPUL2Q1KMD3 747 aaKnown RBP13.02□□□□□ -0.33
LINC01549-201ENST00000440664 PIP4P2Q8N4L2 257 aa13□□□□□ -0.33
LINC01549-201ENST00000440664 SLC4A2P04920 1241 aa12.93□□□□□ -0.34
LINC01549-201ENST00000440664 PLSCR2Q9NRY7 297 aa12.91□□□□□ -0.34
LINC01549-201ENST00000440664 SAMD1Q6SPF0 538 aaPredicted RBP12.9□□□□□ -0.34
LINC01549-201ENST00000440664 AKT1S1Q96B36 256 aa12.89□□□□□ -0.35
LINC01549-201ENST00000440664 POLA2Q14181 598 aa12.84□□□□□ -0.35
LINC01549-201ENST00000440664 REM2Q8IYK8 340 aaPredicted RBP12.78□□□□□ -0.36
LINC01549-201ENST00000440664 EVX2Q03828 476 aa12.77□□□□□ -0.37
LINC01549-201ENST00000440664 LHX8Q68G74 356 aa12.76□□□□□ -0.37
LINC01549-201ENST00000440664 FXR2P51116 673 aaKnown RBP eCLIP12.71□□□□□ -0.37
LINC01549-201ENST00000440664 PITPNM1O00562 1244 aa12.67□□□□□ -0.38
LINC01549-201ENST00000440664 ZBTB12Q9Y330 459 aaPredicted RBP12.5□□□□□ -0.41
LINC01549-201ENST00000440664 OSCARQ8IYS5 282 aa12.49□□□□□ -0.41
LINC01549-201ENST00000440664 GABBR2O75899 941 aa12.45□□□□□ -0.42
LINC01549-201ENST00000440664 C19orf67A6NJJ6 358 aa12.35□□□□□ -0.43
LINC01549-201ENST00000440664 PRKAR2AP13861 404 aaKnown RBP12.35□□□□□ -0.43
LINC01549-201ENST00000440664 MYCNP04198 464 aaPredicted RBP12.34□□□□□ -0.43
LINC01549-201ENST00000440664 CLEC11AQ9Y240 323 aa12.17□□□□□ -0.46
LINC01549-201ENST00000440664 KCNA4P22459 653 aa12.15□□□□□ -0.46
LINC01549-201ENST00000440664 POTEIP0CG38 1075 aa12.14□□□□□ -0.47
LINC01549-201ENST00000440664 ATF5Q9Y2D1 282 aaPredicted RBP12.11□□□□□ -0.47
LINC01549-201ENST00000440664 POTEMA6NI47 508 aa12.09□□□□□ -0.47
LINC01549-201ENST00000440664 SPDYE1Q8NFV5 336 aaPredicted RBP12.08□□□□□ -0.48
LINC01549-201ENST00000440664 POTEGQ6S5H5 508 aa12.02□□□□□ -0.49
LINC01549-201ENST00000440664 SPDYE2BA6NHP3 402 aa12.01□□□□□ -0.49
LINC01549-201ENST00000440664 SPDYE6P0CI01 402 aa12.01□□□□□ -0.49
LINC01549-201ENST00000440664 SPDYE2Q495Y8 402 aa12.01□□□□□ -0.49
LINC01549-201ENST00000440664 CHADLQ6NUI6 762 aa12□□□□□ -0.49
LINC01549-201ENST00000440664 DCBLD2Q96PD2 775 aa11.98□□□□□ -0.49
LINC01549-201ENST00000440664 CD44P16070 742 aaKnown RBP11.91□□□□□ -0.5
LINC01549-201ENST00000440664 OTUD5Q96G74 571 aa11.91□□□□□ -0.5
LINC01549-201ENST00000440664 PCDH10Q9P2E7 1040 aa11.89□□□□□ -0.51
LINC01549-201ENST00000440664 CLCN6P51797 869 aa11.88□□□□□ -0.51
LINC01549-201ENST00000440664 FBLN2P98095 1184 aa11.79□□□□□ -0.52
LINC01549-201ENST00000440664 PRR29P0C7W0 189 aa11.78□□□□□ -0.52
LINC01549-201ENST00000440664 POTEB2H3BUK9 544 aa11.73□□□□□ -0.53
LINC01549-201ENST00000440664 ZNF692Q9BU19 519 aaPredicted RBP11.73□□□□□ -0.53
LINC01549-201ENST00000440664 SSUH2Q9Y2M2 353 aa11.69□□□□□ -0.54
LINC01549-201ENST00000440664 FARP1Q9Y4F1 1045 aaPredicted RBP11.69□□□□□ -0.54
LINC01549-201ENST00000440664 FOXD4L1Q9NU39 408 aa11.66□□□□□ -0.54
LINC01549-201ENST00000440664 ZNF579Q8NAF0 562 aaKnown RBP11.62□□□□□ -0.55
LINC01549-201ENST00000440664 ZRANB1Q9UGI0 708 aa11.59□□□□□ -0.55
LINC01549-201ENST00000440664 GALR2O43603 387 aaPredicted RBP11.58□□□□□ -0.56
LINC01549-201ENST00000440664 FAM163AQ96GL9 167 aaPredicted RBP11.54□□□□□ -0.56
LINC01549-201ENST00000440664 PABPN1Q86U42 306 aaKnown RBP eCLIP11.53□□□□□ -0.56
LINC01549-201ENST00000440664 LCE2DQ5TA82 110 aaPredicted RBP11.5□□□□□ -0.57
LINC01549-201ENST00000440664 MKRN4PQ13434 485 aaPredicted RBP11.48□□□□□ -0.57
LINC01549-201ENST00000440664 MAMSTRQ6ZN01 415 aa11.44□□□□□ -0.58
LINC01549-201ENST00000440664 PELP1Q8IZL8 1130 aaKnown RBP11.42□□□□□ -0.58
LINC01549-201ENST00000440664 METRNQ9UJH8 293 aa11.4□□□□□ -0.58
LINC01549-201ENST00000440664 POTEJP0CG39 1038 aa11.37□□□□□ -0.59
LINC01549-201ENST00000440664 CDAN1Q8IWY9 1227 aa11.37□□□□□ -0.59
LINC01549-201ENST00000440664 ATXN8OSP0DMR3 200 aa11.35□□□□□ -0.59
LINC01549-201ENST00000440664 SCUBE2Q9NQ36 999 aa11.35□□□□□ -0.59
LINC01549-201ENST00000440664 PHF12Q96QT6 1004 aa11.33□□□□□ -0.6
LINC01549-201ENST00000440664 PAK3O75914 559 aaPredicted RBP11.31□□□□□ -0.6
LINC01549-201ENST00000440664 C7P10643 843 aa11.31□□□□□ -0.6
LINC01549-201ENST00000440664 SLC39A7Q92504 469 aa11.31□□□□□ -0.6
LINC01549-201ENST00000440664 SLC4A1APQ9BWU0 796 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms