RNA–Protein interactions for RNA: ENST00000439958.7

CPSF7-205, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF7, Length 3,524 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-205ENST00000439958 NISCHQ9Y2I1 1504 aa32.83■■■□□ 2.85
CPSF7-205ENST00000439958 DCAF8L2P0C7V8 631 aa28.28■■■□□ 2.12
CPSF7-205ENST00000439958 CCDC180Q9P1Z9 1646 aa28.15■■■□□ 2.1
CPSF7-205ENST00000439958 SHROOM4Q9ULL8 1493 aa27.85■■■□□ 2.05
CPSF7-205ENST00000439958 ZCCHC6Q5VYS8 1495 aaKnown RBP27.52■■■□□ 2
CPSF7-205ENST00000439958 ABCC9O60706 1549 aa27.37■■□□□ 1.97
CPSF7-205ENST00000439958 SUPT5HO00267 1087 aaKnown RBP26.95■■□□□ 1.91
CPSF7-205ENST00000439958 DCAF1Q9Y4B6 1507 aa26.73■■□□□ 1.87
CPSF7-205ENST00000439958 SCRIBQ14160 1630 aa26.57■■□□□ 1.84
CPSF7-205ENST00000439958 NACADO15069 1562 aa26.39■■□□□ 1.81
CPSF7-205ENST00000439958 MYO15BQ96JP2 1530 aa26.27■■□□□ 1.8
CPSF7-205ENST00000439958 RB1CC1Q8TDY2 1594 aa26.25■■□□□ 1.79
CPSF7-205ENST00000439958 PABPN1Q86U42 306 aaKnown RBP eCLIP26.13■■□□□ 1.775e-8■■■□□ 16.1
CPSF7-205ENST00000439958 CECR2Q9BXF3 1484 aa25.78■■□□□ 1.72
CPSF7-205ENST00000439958 RSF1Q96T23 1441 aaPredicted RBP25.7■■□□□ 1.7
CPSF7-205ENST00000439958 UNC13AQ9UPW8 1703 aa25.57■■□□□ 1.68
CPSF7-205ENST00000439958 MROH2BQ7Z745 1585 aa25.53■■□□□ 1.68
CPSF7-205ENST00000439958 CHIC1Q5VXU3 224 aa25.43■■□□□ 1.66
CPSF7-205ENST00000439958 BICRAQ9NZM4 1560 aa25.39■■□□□ 1.65
CPSF7-205ENST00000439958 WIZO95785 1651 aa25.32■■□□□ 1.64
CPSF7-205ENST00000439958 BAZ1AQ9NRL2 1556 aaPredicted RBP25.32■■□□□ 1.64
CPSF7-205ENST00000439958 SMARCA4P51532 1647 aa25.16■■□□□ 1.62
CPSF7-205ENST00000439958 TRIM41Q8WV44 630 aa25.08■■□□□ 1.6
CPSF7-205ENST00000439958 FAM9AQ8IZU1 332 aaPredicted RBP25.03■■□□□ 1.6
CPSF7-205ENST00000439958 EHMT2Q96KQ7 1210 aa25.02■■□□□ 1.6
CPSF7-205ENST00000439958 TOP2AP11388 1531 aaKnown RBP24.87■■□□□ 1.57
CPSF7-205ENST00000439958 CCDC88BA6NC98 1476 aa24.84■■□□□ 1.57
CPSF7-205ENST00000439958 BAZ1BQ9UIG0 1483 aaKnown RBP24.83■■□□□ 1.57
CPSF7-205ENST00000439958 ATAD2BQ9ULI0 1458 aa24.83■■□□□ 1.57
CPSF7-205ENST00000439958 LOC105371045A0A1W2PR82 267 aa24.82■■□□□ 1.56
CPSF7-205ENST00000439958 EIF4G1Q04637 1599 aaKnown RBP24.76■■□□□ 1.55
CPSF7-205ENST00000439958 SMARCA2P51531 1590 aa24.7■■□□□ 1.54
CPSF7-205ENST00000439958 ABCC8Q09428 1581 aa24.55■■□□□ 1.52
CPSF7-205ENST00000439958 PEG3Q9GZU2 1588 aa24.54■■□□□ 1.52
CPSF7-205ENST00000439958 NCAPD3P42695 1498 aa24.45■■□□□ 1.5
CPSF7-205ENST00000439958 CC2D2AQ9P2K1 1620 aa24.41■■□□□ 1.5
CPSF7-205ENST00000439958 HMGXB3Q12766 1538 aa24.3■■□□□ 1.48
CPSF7-205ENST00000439958 WRNQ14191 1432 aaPredicted RBP eCLIP24.28■■□□□ 1.48
CPSF7-205ENST00000439958 DNAJC5BQ9UF47 199 aa24.28■■□□□ 1.48
CPSF7-205ENST00000439958 SOGA1O94964 1423 aa24.17■■□□□ 1.46
CPSF7-205ENST00000439958 UBTFP17480 764 aaKnown RBP24.14■■□□□ 1.45
CPSF7-205ENST00000439958 RANGAP1P46060 587 aaPredicted RBP24.13■■□□□ 1.45
CPSF7-205ENST00000439958 CADPSQ9ULU8 1353 aa24.06■■□□□ 1.44
CPSF7-205ENST00000439958 RUSC2Q8N2Y8 1516 aa24.06■■□□□ 1.44
CPSF7-205ENST00000439958 CSRNP3Q8WYN3 585 aa24.06■■□□□ 1.44
CPSF7-205ENST00000439958 SYNJ1O43426 1573 aa24.03■■□□□ 1.44
CPSF7-205ENST00000439958 CFTRP13569 1480 aa24.01■■□□□ 1.43
CPSF7-205ENST00000439958 NESP48681 1621 aa23.99■■□□□ 1.43
CPSF7-205ENST00000439958 PPARGC1BQ86YN6 1023 aaKnown RBP23.99■■□□□ 1.43
CPSF7-205ENST00000439958 PCGF6Q9BYE7 350 aa23.96■■□□□ 1.43
CPSF7-205ENST00000439958 TTBK1Q5TCY1 1321 aaPredicted RBP23.94■■□□□ 1.42
CPSF7-205ENST00000439958 FANCD2Q9BXW9 1451 aa23.84■■□□□ 1.41
CPSF7-205ENST00000439958 CUX1P39880 1505 aa23.81■■□□□ 1.4
CPSF7-205ENST00000439958 EEA1Q15075 1411 aa23.76■■□□□ 1.39
CPSF7-205ENST00000439958 TOP2BQ02880 1626 aa23.75■■□□□ 1.39
CPSF7-205ENST00000439958 CUX2O14529 1486 aa23.66■■□□□ 1.38
CPSF7-205ENST00000439958 CEP164Q9UPV0 1460 aa23.65■■□□□ 1.38
CPSF7-205ENST00000439958 GOLGA3Q08378 1498 aa23.65■■□□□ 1.38
CPSF7-205ENST00000439958 KIF27Q86VH2 1401 aa23.64■■□□□ 1.38
CPSF7-205ENST00000439958 PDS5BQ9NTI5 1447 aa23.64■■□□□ 1.37
CPSF7-205ENST00000439958 FGD5Q6ZNL6 1462 aa23.64■■□□□ 1.37
CPSF7-205ENST00000439958 CEP162Q5TB80 1403 aa23.63■■□□□ 1.37
CPSF7-205ENST00000439958 RAPGEF2Q9Y4G8 1499 aa23.59■■□□□ 1.37
CPSF7-205ENST00000439958 BIVM-ERCC5R4GMW8 1640 aa23.59■■□□□ 1.37
CPSF7-205ENST00000439958 RAD54L2Q9Y4B4 1467 aa23.58■■□□□ 1.36
CPSF7-205ENST00000439958 TNIKQ9UKE5 1360 aa23.57■■□□□ 1.36
CPSF7-205ENST00000439958 LAMC3Q9Y6N6 1575 aa23.54■■□□□ 1.36
CPSF7-205ENST00000439958 TRIM26Q12899 539 aaPredicted RBP23.53■■□□□ 1.36
CPSF7-205ENST00000439958 TOPBP1Q92547 1522 aa23.51■■□□□ 1.35
CPSF7-205ENST00000439958 PRDM2Q13029 1718 aa23.51■■□□□ 1.35
CPSF7-205ENST00000439958 TDRD9Q8NDG6 1382 aaKnown RBP23.49■■□□□ 1.35
CPSF7-205ENST00000439958 ERCC6Q03468 1493 aa23.47■■□□□ 1.35
CPSF7-205ENST00000439958 POLA1P09884 1462 aaPredicted RBP23.45■■□□□ 1.34
CPSF7-205ENST00000439958 URB2Q14146 1524 aaKnown RBP23.45■■□□□ 1.34
CPSF7-205ENST00000439958 APLP2Q06481 763 aa23.44■■□□□ 1.34
CPSF7-205ENST00000439958 CLIP1P30622 1438 aa23.44■■□□□ 1.34
CPSF7-205ENST00000439958 DNMBPQ6XZF7 1577 aa23.42■■□□□ 1.34
CPSF7-205ENST00000439958 IGF1RP08069 1367 aa23.4■■□□□ 1.34
CPSF7-205ENST00000439958 P3H3Q8IVL6 736 aa23.39■■□□□ 1.34
CPSF7-205ENST00000439958 CARMIL1Q5VZK9 1371 aa23.39■■□□□ 1.34
CPSF7-205ENST00000439958 KIF21AQ7Z4S6 1674 aa23.38■■□□□ 1.33
CPSF7-205ENST00000439958 ATP1B4Q9UN42 357 aaPredicted RBP23.37■■□□□ 1.33
CPSF7-205ENST00000439958 KIF21BO75037 1637 aa23.35■■□□□ 1.33
CPSF7-205ENST00000439958 PRXQ9BXM0 1461 aa23.32■■□□□ 1.32
CPSF7-205ENST00000439958 FBLN2P98095 1184 aa23.24■■□□□ 1.31
CPSF7-205ENST00000439958 MRC2Q9UBG0 1479 aa23.23■■□□□ 1.31
CPSF7-205ENST00000439958 ABCA10Q8WWZ4 1543 aa23.21■■□□□ 1.31
CPSF7-205ENST00000439958 AQRO60306 1485 aaKnown RBP eCLIP23.21■■□□□ 1.312e-7■■■■■ 40.5
CPSF7-205ENST00000439958 GAPVD1Q14C86 1478 aa23.18■■□□□ 1.3
CPSF7-205ENST00000439958 ERICH3Q5RHP9 1530 aa23.17■■□□□ 1.3
CPSF7-205ENST00000439958 VPS8Q8N3P4 1428 aa23.1■■□□□ 1.29
CPSF7-205ENST00000439958 ZNF608Q9ULD9 1512 aaPredicted RBP23.06■■□□□ 1.28
CPSF7-205ENST00000439958 HNRNPUL2Q1KMD3 747 aaKnown RBP23.05■■□□□ 1.28
CPSF7-205ENST00000439958 HRCP23327 699 aa23.04■■□□□ 1.28
CPSF7-205ENST00000439958 ARAP1Q96P48 1450 aa23.02■■□□□ 1.28
CPSF7-205ENST00000439958 ARID3CA6NKF2 412 aa23■■□□□ 1.27
CPSF7-205ENST00000439958 CHMP7Q8WUX9 453 aaPredicted RBP22.99■■□□□ 1.27
CPSF7-205ENST00000439958 ARHGAP35Q9NRY4 1499 aa22.98■■□□□ 1.27
CPSF7-205ENST00000439958 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.97■■□□□ 1.27
CPSF7-205ENST00000439958 KANK4Q5T7N3 995 aaPredicted RBP22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms