RNA–Protein interactions for RNA: ENST00000439374.6

CDC42SE1-202, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CDC42SE1, Length 3,498 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-202ENST00000439374 NISCHQ9Y2I1 1504 aa19.26■□□□□ 0.67
CDC42SE1-202ENST00000439374 SHROOM4Q9ULL8 1493 aa17.52■□□□□ 0.4
CDC42SE1-202ENST00000439374 DCAF8L2P0C7V8 631 aa17.48■□□□□ 0.39
CDC42SE1-202ENST00000439374 SUPT5HO00267 1087 aaKnown RBP17.3■□□□□ 0.36
CDC42SE1-202ENST00000439374 PPARGC1BQ86YN6 1023 aaKnown RBP16.7■□□□□ 0.26
CDC42SE1-202ENST00000439374 PCGF6Q9BYE7 350 aa16.67■□□□□ 0.26
CDC42SE1-202ENST00000439374 HRCP23327 699 aa16.4■□□□□ 0.22
CDC42SE1-202ENST00000439374 EHMT2Q96KQ7 1210 aa16.4■□□□□ 0.22
CDC42SE1-202ENST00000439374 CHIC1Q5VXU3 224 aa16.27■□□□□ 0.19
CDC42SE1-202ENST00000439374 LOC105371045A0A1W2PR82 267 aa16.17■□□□□ 0.18
CDC42SE1-202ENST00000439374 FAM9AQ8IZU1 332 aaPredicted RBP16.17■□□□□ 0.18
CDC42SE1-202ENST00000439374 ZCCHC6Q5VYS8 1495 aaKnown RBP16.15■□□□□ 0.18
CDC42SE1-202ENST00000439374 MYO15BQ96JP2 1530 aa15.97■□□□□ 0.15
CDC42SE1-202ENST00000439374 CCDC180Q9P1Z9 1646 aa15.91■□□□□ 0.14
CDC42SE1-202ENST00000439374 TRIM41Q8WV44 630 aa15.86■□□□□ 0.13
CDC42SE1-202ENST00000439374 TTBK1Q5TCY1 1321 aaPredicted RBP15.85■□□□□ 0.13
CDC42SE1-202ENST00000439374 ABCC9O60706 1549 aa15.8■□□□□ 0.12
CDC42SE1-202ENST00000439374 SCAF1Q9H7N4 1312 aaKnown RBP15.7■□□□□ 0.1
CDC42SE1-202ENST00000439374 SCRIBQ14160 1630 aa15.63■□□□□ 0.09
CDC42SE1-202ENST00000439374 TRIM26Q12899 539 aaPredicted RBP15.6■□□□□ 0.09
CDC42SE1-202ENST00000439374 YTHDC1Q96MU7 727 aaKnown RBP15.55■□□□□ 0.08
CDC42SE1-202ENST00000439374 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.48■□□□□ 0.07
CDC42SE1-202ENST00000439374 PELP1Q8IZL8 1130 aaKnown RBP15.48■□□□□ 0.07
CDC42SE1-202ENST00000439374 PABPN1Q86U42 306 aaKnown RBP eCLIP15.47■□□□□ 0.07
CDC42SE1-202ENST00000439374 RANGAP1P46060 587 aaPredicted RBP15.46■□□□□ 0.07
CDC42SE1-202ENST00000439374 RSF1Q96T23 1441 aaPredicted RBP15.44■□□□□ 0.06
CDC42SE1-202ENST00000439374 CCER1Q8TC90 406 aaPredicted RBP15.41■□□□□ 0.06
CDC42SE1-202ENST00000439374 GTF3C3Q9Y5Q9 886 aa15.4■□□□□ 0.06
CDC42SE1-202ENST00000439374 NEUROD1Q13562 356 aa15.38■□□□□ 0.05
CDC42SE1-202ENST00000439374 CECR2Q9BXF3 1484 aa15.34■□□□□ 0.05
CDC42SE1-202ENST00000439374 DCAF1Q9Y4B6 1507 aa15.33■□□□□ 0.04
CDC42SE1-202ENST00000439374 UBTFP17480 764 aaKnown RBP15.3■□□□□ 0.04
CDC42SE1-202ENST00000439374 ZEB1P37275 1124 aaPredicted RBP15.27■□□□□ 0.04
CDC42SE1-202ENST00000439374 RB1CC1Q8TDY2 1594 aa15.22■□□□□ 0.03
CDC42SE1-202ENST00000439374 ACIN1Q9UKV3 1341 aaKnown RBP15.22■□□□□ 0.03
CDC42SE1-202ENST00000439374 DIEXFQ68CQ4 756 aaKnown RBP15.18■□□□□ 0.02
CDC42SE1-202ENST00000439374 CENPBP07199 599 aaPredicted RBP15.16■□□□□ 0.02
CDC42SE1-202ENST00000439374 MROH2BQ7Z745 1585 aa15.14■□□□□ 0.01
CDC42SE1-202ENST00000439374 HNRNPUL2Q1KMD3 747 aaKnown RBP15.03■□□□□ -0
CDC42SE1-202ENST00000439374 WIZO95785 1651 aa15□□□□□ -0.01
CDC42SE1-202ENST00000439374 APLP2Q06481 763 aa14.97□□□□□ -0.01
CDC42SE1-202ENST00000439374 NACADO15069 1562 aa14.97□□□□□ -0.01
CDC42SE1-202ENST00000439374 CSRNP3Q8WYN3 585 aa14.93□□□□□ -0.02
CDC42SE1-202ENST00000439374 ABCC8Q09428 1581 aa14.9□□□□□ -0.02
CDC42SE1-202ENST00000439374 SOGA1O94964 1423 aa14.87□□□□□ -0.03
CDC42SE1-202ENST00000439374 CCDC88BA6NC98 1476 aa14.85□□□□□ -0.03
CDC42SE1-202ENST00000439374 ITGAEP38570 1179 aa14.83□□□□□ -0.03
CDC42SE1-202ENST00000439374 BCANQ96GW7 911 aa14.83□□□□□ -0.04
CDC42SE1-202ENST00000439374 MIER1Q8N108 512 aa14.83□□□□□ -0.04
CDC42SE1-202ENST00000439374 ATP1B4Q9UN42 357 aaPredicted RBP14.81□□□□□ -0.04
CDC42SE1-202ENST00000439374 BAZ1AQ9NRL2 1556 aaPredicted RBP14.77□□□□□ -0.05
CDC42SE1-202ENST00000439374 RUSC2Q8N2Y8 1516 aa14.77□□□□□ -0.05
CDC42SE1-202ENST00000439374 CEP162Q5TB80 1403 aa14.73□□□□□ -0.05
CDC42SE1-202ENST00000439374 ZNF316A6NFI3 1004 aaPredicted RBP14.71□□□□□ -0.05
CDC42SE1-202ENST00000439374 MYT1Q01538 1121 aa14.71□□□□□ -0.05
CDC42SE1-202ENST00000439374 WRNQ14191 1432 aaPredicted RBP eCLIP14.63□□□□□ -0.07
CDC42SE1-202ENST00000439374 UNC13AQ9UPW8 1703 aa14.62□□□□□ -0.07
CDC42SE1-202ENST00000439374 P3H3Q8IVL6 736 aa14.61□□□□□ -0.07
CDC42SE1-202ENST00000439374 SMARCA4P51532 1647 aa14.58□□□□□ -0.07
CDC42SE1-202ENST00000439374 TOP2AP11388 1531 aaKnown RBP14.58□□□□□ -0.08
CDC42SE1-202ENST00000439374 TNIKQ9UKE5 1360 aa14.56□□□□□ -0.08
CDC42SE1-202ENST00000439374 SMARCA2P51531 1590 aa14.54□□□□□ -0.08
CDC42SE1-202ENST00000439374 CLIP1P30622 1438 aa14.53□□□□□ -0.08
CDC42SE1-202ENST00000439374 BAZ1BQ9UIG0 1483 aaKnown RBP14.51□□□□□ -0.09
CDC42SE1-202ENST00000439374 GOLGA3Q08378 1498 aa14.49□□□□□ -0.09
CDC42SE1-202ENST00000439374 BICRAQ9NZM4 1560 aa14.46□□□□□ -0.09
CDC42SE1-202ENST00000439374 FAM50AQ14320 339 aaKnown RBP14.44□□□□□ -0.1
CDC42SE1-202ENST00000439374 KANK4Q5T7N3 995 aaPredicted RBP14.43□□□□□ -0.1
CDC42SE1-202ENST00000439374 KCNH8Q96L42 1107 aa14.42□□□□□ -0.1
CDC42SE1-202ENST00000439374 SUPT16HQ9Y5B9 1047 aaKnown RBP14.42□□□□□ -0.1
CDC42SE1-202ENST00000439374 HIRIP3Q9BW71 556 aaPredicted RBP14.41□□□□□ -0.1
CDC42SE1-202ENST00000439374 ATAD2BQ9ULI0 1458 aa14.41□□□□□ -0.1
CDC42SE1-202ENST00000439374 RAPGEF2Q9Y4G8 1499 aa14.41□□□□□ -0.1
CDC42SE1-202ENST00000439374 BCL11AQ9H165 835 aa14.39□□□□□ -0.11
CDC42SE1-202ENST00000439374 EEA1Q15075 1411 aa14.39□□□□□ -0.11
CDC42SE1-202ENST00000439374 ARID3CA6NKF2 412 aa14.37□□□□□ -0.11
CDC42SE1-202ENST00000439374 CEP164Q9UPV0 1460 aa14.37□□□□□ -0.11
CDC42SE1-202ENST00000439374 FKBP8Q14318 412 aa14.36□□□□□ -0.11
CDC42SE1-202ENST00000439374 CNGB1Q14028 1251 aaPredicted RBP14.36□□□□□ -0.11
CDC42SE1-202ENST00000439374 TSHZ2Q9NRE2 1034 aa14.33□□□□□ -0.12
CDC42SE1-202ENST00000439374 IRX6P78412 446 aaPredicted RBP14.32□□□□□ -0.12
CDC42SE1-202ENST00000439374 TRIM52Q96A61 297 aa14.32□□□□□ -0.12
CDC42SE1-202ENST00000439374 SYNJ1O43426 1573 aa14.31□□□□□ -0.12
CDC42SE1-202ENST00000439374 ANP32EQ9BTT0 268 aa14.29□□□□□ -0.12
CDC42SE1-202ENST00000439374 VPS8Q8N3P4 1428 aa14.27□□□□□ -0.13
CDC42SE1-202ENST00000439374 EIF4G1Q04637 1599 aaKnown RBP14.27□□□□□ -0.13
CDC42SE1-202ENST00000439374 ERICH6Q7L0X2 663 aa14.27□□□□□ -0.13
CDC42SE1-202ENST00000439374 DDX10Q13206 875 aaKnown RBP14.24□□□□□ -0.13
CDC42SE1-202ENST00000439374 NEFLP07196 543 aa14.24□□□□□ -0.13
CDC42SE1-202ENST00000439374 SENP3-EIF4A1A0A087X0R7 540 aa14.21□□□□□ -0.13
CDC42SE1-202ENST00000439374 KIF27Q86VH2 1401 aa14.2□□□□□ -0.14
CDC42SE1-202ENST00000439374 SIN3AQ96ST3 1273 aa14.19□□□□□ -0.14
CDC42SE1-202ENST00000439374 CUX2O14529 1486 aa14.17□□□□□ -0.14
CDC42SE1-202ENST00000439374 DNAJC5BQ9UF47 199 aa14.13□□□□□ -0.15
CDC42SE1-202ENST00000439374 CHIC2Q9UKJ5 165 aa14.11□□□□□ -0.15
CDC42SE1-202ENST00000439374 KIF21BO75037 1637 aa14.11□□□□□ -0.15
CDC42SE1-202ENST00000439374 CARMIL1Q5VZK9 1371 aa14.1□□□□□ -0.15
CDC42SE1-202ENST00000439374 RBM19Q9Y4C8 960 aaKnown RBP14.07□□□□□ -0.16
CDC42SE1-202ENST00000439374 ARAP1Q96P48 1450 aa14.07□□□□□ -0.16
CDC42SE1-202ENST00000439374 CCNB3Q8WWL7 1395 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms