RNA–Protein interactions for RNA: ENST00000436638.5

ECHDC1-208, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

APPRIS ALT2 TSL 3

Gene ECHDC1, Length 766 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-208ENST00000436638 AEBP2Q6ZN18 517 aaPredicted RBP21.06■□□□□ 0.96
ECHDC1-208ENST00000436638 CHIC1Q5VXU3 224 aa20.43■□□□□ 0.86
ECHDC1-208ENST00000436638 PHF23Q9BUL5 403 aaPredicted RBP17.96■□□□□ 0.47
ECHDC1-208ENST00000436638 SENP3Q9H4L4 574 aaPredicted RBP17.91■□□□□ 0.46
ECHDC1-208ENST00000436638 FOXD1Q16676 465 aa16.63■□□□□ 0.25
ECHDC1-208ENST00000436638 PLPPR3Q6T4P5 718 aa16.55■□□□□ 0.24
ECHDC1-208ENST00000436638 ADRA2BP18089 450 aa15.91■□□□□ 0.14
ECHDC1-208ENST00000436638 PPP6R1Q9UPN7 881 aa15.91■□□□□ 0.14
ECHDC1-208ENST00000436638 PIAS4Q8N2W9 510 aaPredicted RBP15.69■□□□□ 0.1
ECHDC1-208ENST00000436638 MSH5O43196 834 aa15.39■□□□□ 0.05
ECHDC1-208ENST00000436638 PPP4R3CPQ6ZMV5 832 aa14.58□□□□□ -0.08
ECHDC1-208ENST00000436638 SCAF1Q9H7N4 1312 aaKnown RBP14.56□□□□□ -0.08
ECHDC1-208ENST00000436638 MAPK8IP2Q13387 824 aaPredicted RBP14.48□□□□□ -0.09
ECHDC1-208ENST00000436638 NISCHQ9Y2I1 1504 aa14.31□□□□□ -0.12
ECHDC1-208ENST00000436638 POTEDQ86YR6 584 aa14.27□□□□□ -0.13
ECHDC1-208ENST00000436638 DMRT2Q9Y5R5 561 aa14.26□□□□□ -0.13
ECHDC1-208ENST00000436638 CNKSR2Q8WXI2 1034 aa14.19□□□□□ -0.14
ECHDC1-208ENST00000436638 NCBP3Q53F19 620 aaKnown RBP14.17□□□□□ -0.14
ECHDC1-208ENST00000436638 KCNA4P22459 653 aa14.08□□□□□ -0.16
ECHDC1-208ENST00000436638 NPM3O75607 178 aaKnown RBP13.93□□□□□ -0.18
ECHDC1-208ENST00000436638 RNF216Q9NWF9 866 aaPredicted RBP13.93□□□□□ -0.18
ECHDC1-208ENST00000436638 HOXD11P31277 338 aaPredicted RBP13.89□□□□□ -0.19
ECHDC1-208ENST00000436638 DCAF8L1A6NGE4 600 aa13.76□□□□□ -0.21
ECHDC1-208ENST00000436638 DNAJC5BQ9UF47 199 aa13.45□□□□□ -0.26
ECHDC1-208ENST00000436638 SLC4A1APQ9BWU0 796 aaKnown RBP13.4□□□□□ -0.26
ECHDC1-208ENST00000436638 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.33□□□□□ -0.288e-8■■■■□ 21.5
ECHDC1-208ENST00000436638 SLC4A2P04920 1241 aa13.18□□□□□ -0.3
ECHDC1-208ENST00000436638 RNF39Q9H2S5 420 aa13.16□□□□□ -0.3
ECHDC1-208ENST00000436638 U3KPZ7 1027 aaPredicted RBP13.03□□□□□ -0.32
ECHDC1-208ENST00000436638 C1QBPQ07021 282 aaKnown RBP13.01□□□□□ -0.33
ECHDC1-208ENST00000436638 CACNB1Q02641 598 aaPredicted RBP12.99□□□□□ -0.33
ECHDC1-208ENST00000436638 FOXD4L1Q9NU39 408 aa12.99□□□□□ -0.33
ECHDC1-208ENST00000436638 ZBTB22O15209 634 aa12.93□□□□□ -0.34
ECHDC1-208ENST00000436638 EHMT2Q96KQ7 1210 aa12.89□□□□□ -0.35
ECHDC1-208ENST00000436638 MYCNP04198 464 aaPredicted RBP12.88□□□□□ -0.35
ECHDC1-208ENST00000436638 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.84□□□□□ -0.35
ECHDC1-208ENST00000436638 HNRNPUL2Q1KMD3 747 aaKnown RBP12.84□□□□□ -0.35
ECHDC1-208ENST00000436638 SAMD1Q6SPF0 538 aaPredicted RBP12.79□□□□□ -0.36
ECHDC1-208ENST00000436638 CSRNP3Q8WYN3 585 aa12.76□□□□□ -0.37
ECHDC1-208ENST00000436638 APLP2Q06481 763 aa12.75□□□□□ -0.37
ECHDC1-208ENST00000436638 SPINK5Q9NQ38 1064 aaPredicted RBP12.74□□□□□ -0.37
ECHDC1-208ENST00000436638 CAPN15O75808 1086 aa12.73□□□□□ -0.37
ECHDC1-208ENST00000436638 TRHP20396 242 aaPredicted RBP12.64□□□□□ -0.39
ECHDC1-208ENST00000436638 CCDC180Q9P1Z9 1646 aa12.63□□□□□ -0.39
ECHDC1-208ENST00000436638 ZNF219Q9P2Y4 722 aaPredicted RBP12.58□□□□□ -0.4
ECHDC1-208ENST00000436638 ATF5Q9Y2D1 282 aaPredicted RBP12.55□□□□□ -0.4
ECHDC1-208ENST00000436638 ATXN8OSP0DMR3 200 aa12.53□□□□□ -0.4
ECHDC1-208ENST00000436638 DSG3P32926 999 aa12.5□□□□□ -0.41
ECHDC1-208ENST00000436638 ABCB7O75027 752 aa12.48□□□□□ -0.41
ECHDC1-208ENST00000436638 POLA2Q14181 598 aa12.38□□□□□ -0.43
ECHDC1-208ENST00000436638 ABCC9O60706 1549 aa12.26□□□□□ -0.45
ECHDC1-208ENST00000436638 ZBTB12Q9Y330 459 aaPredicted RBP12.14□□□□□ -0.47
ECHDC1-208ENST00000436638 FBLN2P98095 1184 aa12.07□□□□□ -0.48
ECHDC1-208ENST00000436638 DCAF8L2P0C7V8 631 aa12.01□□□□□ -0.49
ECHDC1-208ENST00000436638 MKRN4PQ13434 485 aaPredicted RBP11.98□□□□□ -0.49
ECHDC1-208ENST00000436638 OSCARQ8IYS5 282 aa11.95□□□□□ -0.5
ECHDC1-208ENST00000436638 ZCCHC6Q5VYS8 1495 aaKnown RBP11.94□□□□□ -0.5
ECHDC1-208ENST00000436638 RBM42Q9BTD8 480 aaKnown RBP11.92□□□□□ -0.5
ECHDC1-208ENST00000436638 NACADO15069 1562 aa11.87□□□□□ -0.51
ECHDC1-208ENST00000436638 RB1CC1Q8TDY2 1594 aa11.85□□□□□ -0.51
ECHDC1-208ENST00000436638 DCAF1Q9Y4B6 1507 aa11.83□□□□□ -0.52
ECHDC1-208ENST00000436638 MYO15BQ96JP2 1530 aa11.82□□□□□ -0.52
ECHDC1-208ENST00000436638 SPDYE2BA6NHP3 402 aa11.8□□□□□ -0.52
ECHDC1-208ENST00000436638 SPDYE6P0CI01 402 aa11.8□□□□□ -0.52
ECHDC1-208ENST00000436638 SPDYE2Q495Y8 402 aa11.8□□□□□ -0.52
ECHDC1-208ENST00000436638 ZNF692Q9BU19 519 aaPredicted RBP11.77□□□□□ -0.53
ECHDC1-208ENST00000436638 AKT1S1Q96B36 256 aa11.74□□□□□ -0.53
ECHDC1-208ENST00000436638 SPDYE4A6NLX3 237 aa11.69□□□□□ -0.54
ECHDC1-208ENST00000436638 SSUH2Q9Y2M2 353 aa11.66□□□□□ -0.54
ECHDC1-208ENST00000436638 REM2Q8IYK8 340 aaPredicted RBP11.64□□□□□ -0.55
ECHDC1-208ENST00000436638 PABPN1Q86U42 306 aaKnown RBP eCLIP11.6□□□□□ -0.55
ECHDC1-208ENST00000436638 FKBP8Q14318 412 aa11.58□□□□□ -0.56
ECHDC1-208ENST00000436638 SCRIBQ14160 1630 aa11.57□□□□□ -0.56
ECHDC1-208ENST00000436638 CLEC11AQ9Y240 323 aa11.51□□□□□ -0.57
ECHDC1-208ENST00000436638 UNC13AQ9UPW8 1703 aa11.5□□□□□ -0.57
ECHDC1-208ENST00000436638 PITPNM1O00562 1244 aa11.5□□□□□ -0.57
ECHDC1-208ENST00000436638 SPDYE1Q8NFV5 336 aaPredicted RBP11.5□□□□□ -0.57
ECHDC1-208ENST00000436638 CHRDL2Q6WN34 429 aa11.49□□□□□ -0.57
ECHDC1-208ENST00000436638 SHROOM4Q9ULL8 1493 aa11.46□□□□□ -0.57
ECHDC1-208ENST00000436638 BICRAQ9NZM4 1560 aa11.41□□□□□ -0.58
ECHDC1-208ENST00000436638 PROM2Q8N271 834 aa11.39□□□□□ -0.59
ECHDC1-208ENST00000436638 STAG3Q9UJ98 1225 aa11.37□□□□□ -0.59
ECHDC1-208ENST00000436638 PRR29P0C7W0 189 aa11.36□□□□□ -0.59
ECHDC1-208ENST00000436638 PIP4P2Q8N4L2 257 aa11.31□□□□□ -0.6
ECHDC1-208ENST00000436638 FXR2P51116 673 aaKnown RBP eCLIP11.29□□□□□ -0.6
ECHDC1-208ENST00000436638 POTEHQ6S545 545 aa11.28□□□□□ -0.6
ECHDC1-208ENST00000436638 PRKAR2AP13861 404 aaKnown RBP11.24□□□□□ -0.61
ECHDC1-208ENST00000436638 CHADLQ6NUI6 762 aa11.21□□□□□ -0.61
ECHDC1-208ENST00000436638 FBXO3Q9UK99 471 aa11.2□□□□□ -0.62
ECHDC1-208ENST00000436638 SLC24A1O60721 1099 aa11.14□□□□□ -0.63
ECHDC1-208ENST00000436638 MIER1Q8N108 512 aa11.14□□□□□ -0.63
ECHDC1-208ENST00000436638 CREBZFQ9NS37 354 aa11.14□□□□□ -0.63
ECHDC1-208ENST00000436638 EIF4G1Q04637 1599 aaKnown RBP11.14□□□□□ -0.63
ECHDC1-208ENST00000436638 CECR2Q9BXF3 1484 aa11.12□□□□□ -0.63
ECHDC1-208ENST00000436638 PLCD3Q8N3E9 789 aa11.11□□□□□ -0.63
ECHDC1-208ENST00000436638 BAZ1AQ9NRL2 1556 aaPredicted RBP11.1□□□□□ -0.63
ECHDC1-208ENST00000436638 PLEKHG5O94827 1062 aa11.09□□□□□ -0.63
ECHDC1-208ENST00000436638 FARP1Q9Y4F1 1045 aaPredicted RBP11.07□□□□□ -0.64
ECHDC1-208ENST00000436638 CC2D2AQ9P2K1 1620 aa11.06□□□□□ -0.64
ECHDC1-208ENST00000436638 SMARCA4P51532 1647 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms