RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-205ENST00000433888 AEBP2Q6ZN18 517 aaPredicted RBP28.13■■■□□ 2.09
PTPN4-205ENST00000433888 CHIC1Q5VXU3 224 aa26.86■■□□□ 1.89
PTPN4-205ENST00000433888 SENP3Q9H4L4 574 aaPredicted RBP23.87■■□□□ 1.41
PTPN4-205ENST00000433888 PHF23Q9BUL5 403 aaPredicted RBP23.64■■□□□ 1.37
PTPN4-205ENST00000433888 FOXD1Q16676 465 aa22.29■■□□□ 1.16
PTPN4-205ENST00000433888 PLPPR3Q6T4P5 718 aa21.5■■□□□ 1.03
PTPN4-205ENST00000433888 PPP6R1Q9UPN7 881 aa21.02■□□□□ 0.96
PTPN4-205ENST00000433888 ADRA2BP18089 450 aa20.92■□□□□ 0.94
PTPN4-205ENST00000433888 PIAS4Q8N2W9 510 aaPredicted RBP20.8■□□□□ 0.92
PTPN4-205ENST00000433888 MSH5O43196 834 aa20.72■□□□□ 0.91
PTPN4-205ENST00000433888 POTEDQ86YR6 584 aa19.94■□□□□ 0.78
PTPN4-205ENST00000433888 MAPK8IP2Q13387 824 aaPredicted RBP19.18■□□□□ 0.66
PTPN4-205ENST00000433888 SCAF1Q9H7N4 1312 aaKnown RBP19.07■□□□□ 0.64
PTPN4-205ENST00000433888 DMRT2Q9Y5R5 561 aa18.99■□□□□ 0.63
PTPN4-205ENST00000433888 PPP4R3CPQ6ZMV5 832 aa18.9■□□□□ 0.62
PTPN4-205ENST00000433888 CNKSR2Q8WXI2 1034 aa18.49■□□□□ 0.55
PTPN4-205ENST00000433888 HOXD11P31277 338 aaPredicted RBP18.41■□□□□ 0.54
PTPN4-205ENST00000433888 RNF216Q9NWF9 866 aaPredicted RBP18.29■□□□□ 0.52
PTPN4-205ENST00000433888 NCBP3Q53F19 620 aaKnown RBP18.17■□□□□ 0.5
PTPN4-205ENST00000433888 DCAF8L1A6NGE4 600 aa18.09■□□□□ 0.49
PTPN4-205ENST00000433888 NPM3O75607 178 aaKnown RBP17.98■□□□□ 0.47
PTPN4-205ENST00000433888 KCNA4P22459 653 aa17.81■□□□□ 0.44
PTPN4-205ENST00000433888 RNF39Q9H2S5 420 aa17.74■□□□□ 0.43
PTPN4-205ENST00000433888 DNAJC5BQ9UF47 199 aa17.74■□□□□ 0.43
PTPN4-205ENST00000433888 CACNB1Q02641 598 aaPredicted RBP17.63■□□□□ 0.41
PTPN4-205ENST00000433888 C1QBPQ07021 282 aaKnown RBP17.47■□□□□ 0.39
PTPN4-205ENST00000433888 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.43■□□□□ 0.38
PTPN4-205ENST00000433888 U3KPZ7 1027 aaPredicted RBP17.17■□□□□ 0.34
PTPN4-205ENST00000433888 SLC4A2P04920 1241 aa17.16■□□□□ 0.34
PTPN4-205ENST00000433888 SPINK5Q9NQ38 1064 aaPredicted RBP16.85■□□□□ 0.29
PTPN4-205ENST00000433888 SLC4A1APQ9BWU0 796 aaKnown RBP16.8■□□□□ 0.28
PTPN4-205ENST00000433888 CAPN15O75808 1086 aa16.74■□□□□ 0.27
PTPN4-205ENST00000433888 DSG3P32926 999 aa16.69■□□□□ 0.26
PTPN4-205ENST00000433888 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.66■□□□□ 0.26
PTPN4-205ENST00000433888 HNRNPUL2Q1KMD3 747 aaKnown RBP16.66■□□□□ 0.26
PTPN4-205ENST00000433888 APLP2Q06481 763 aa16.6■□□□□ 0.25
PTPN4-205ENST00000433888 SAMD1Q6SPF0 538 aaPredicted RBP16.59■□□□□ 0.25
PTPN4-205ENST00000433888 MYCNP04198 464 aaPredicted RBP16.58■□□□□ 0.24
PTPN4-205ENST00000433888 TRHP20396 242 aaPredicted RBP16.53■□□□□ 0.24
PTPN4-205ENST00000433888 FOXD4L1Q9NU39 408 aa16.52■□□□□ 0.24
PTPN4-205ENST00000433888 ZNF219Q9P2Y4 722 aaPredicted RBP16.51■□□□□ 0.23
PTPN4-205ENST00000433888 ZBTB22O15209 634 aa16.4■□□□□ 0.22
PTPN4-205ENST00000433888 ABCB7O75027 752 aa16.39■□□□□ 0.21
PTPN4-205ENST00000433888 ATF5Q9Y2D1 282 aaPredicted RBP16.26■□□□□ 0.19
PTPN4-205ENST00000433888 POLA2Q14181 598 aa16.17■□□□□ 0.18
PTPN4-205ENST00000433888 ATXN8OSP0DMR3 200 aa16.01■□□□□ 0.15
PTPN4-205ENST00000433888 CSRNP3Q8WYN3 585 aa15.83■□□□□ 0.12
PTPN4-205ENST00000433888 RBM42Q9BTD8 480 aaKnown RBP15.83■□□□□ 0.12
PTPN4-205ENST00000433888 ZBTB12Q9Y330 459 aaPredicted RBP15.79■□□□□ 0.12
PTPN4-205ENST00000433888 POTEHQ6S545 545 aa15.64■□□□□ 0.09
PTPN4-205ENST00000433888 OSCARQ8IYS5 282 aa15.62■□□□□ 0.09
PTPN4-205ENST00000433888 EHMT2Q96KQ7 1210 aa15.62■□□□□ 0.09
PTPN4-205ENST00000433888 AKT1S1Q96B36 256 aa15.55■□□□□ 0.08
PTPN4-205ENST00000433888 MKRN4PQ13434 485 aaPredicted RBP15.52■□□□□ 0.08
PTPN4-205ENST00000433888 FBLN2P98095 1184 aa15.49■□□□□ 0.07
PTPN4-205ENST00000433888 CHRDL2Q6WN34 429 aa15.44■□□□□ 0.06
PTPN4-205ENST00000433888 REM2Q8IYK8 340 aaPredicted RBP15.42■□□□□ 0.06
PTPN4-205ENST00000433888 SPDYE2BA6NHP3 402 aa15.37■□□□□ 0.05
PTPN4-205ENST00000433888 SPDYE6P0CI01 402 aa15.37■□□□□ 0.05
PTPN4-205ENST00000433888 SPDYE2Q495Y8 402 aa15.37■□□□□ 0.05
PTPN4-205ENST00000433888 PITPNM1O00562 1244 aa15.24■□□□□ 0.03
PTPN4-205ENST00000433888 SSUH2Q9Y2M2 353 aa15.23■□□□□ 0.03
PTPN4-205ENST00000433888 ZNF692Q9BU19 519 aaPredicted RBP15.21■□□□□ 0.03
PTPN4-205ENST00000433888 PIP4P2Q8N4L2 257 aa15.14■□□□□ 0.01
PTPN4-205ENST00000433888 FXR2P51116 673 aaKnown RBP eCLIP15.12■□□□□ 0.01
PTPN4-205ENST00000433888 SPDYE1Q8NFV5 336 aaPredicted RBP15.04■□□□□ -0
PTPN4-205ENST00000433888 PABPN1Q86U42 306 aaKnown RBP eCLIP15□□□□□ -0.01
PTPN4-205ENST00000433888 CLEC11AQ9Y240 323 aa14.98□□□□□ -0.01
PTPN4-205ENST00000433888 PRKAR2AP13861 404 aaKnown RBP14.83□□□□□ -0.04
PTPN4-205ENST00000433888 SPDYE4A6NLX3 237 aa14.82□□□□□ -0.04
PTPN4-205ENST00000433888 PRR29P0C7W0 189 aa14.78□□□□□ -0.04
PTPN4-205ENST00000433888 HAX1O00165 279 aa14.76□□□□□ -0.05
PTPN4-205ENST00000433888 SP7Q8TDD2 431 aaPredicted RBP14.75□□□□□ -0.05
PTPN4-205ENST00000433888 CHADLQ6NUI6 762 aa14.72□□□□□ -0.05
PTPN4-205ENST00000433888 EVX2Q03828 476 aa14.71□□□□□ -0.05
PTPN4-205ENST00000433888 C19orf67A6NJJ6 358 aa14.61□□□□□ -0.07
PTPN4-205ENST00000433888 STAG3Q9UJ98 1225 aa14.61□□□□□ -0.07
PTPN4-205ENST00000433888 PROM2Q8N271 834 aa14.57□□□□□ -0.08
PTPN4-205ENST00000433888 CREBZFQ9NS37 354 aa14.53□□□□□ -0.08
PTPN4-205ENST00000433888 FARP1Q9Y4F1 1045 aaPredicted RBP14.53□□□□□ -0.08
PTPN4-205ENST00000433888 CD44P16070 742 aaKnown RBP14.36□□□□□ -0.11
PTPN4-205ENST00000433888 GABBR2O75899 941 aa14.34□□□□□ -0.11
PTPN4-205ENST00000433888 MNX1P50219 401 aaPredicted RBP14.33□□□□□ -0.12
PTPN4-205ENST00000433888 FKBP8Q14318 412 aa14.27□□□□□ -0.13
PTPN4-205ENST00000433888 ZRANB1Q9UGI0 708 aa14.2□□□□□ -0.14
PTPN4-205ENST00000433888 ZNF579Q8NAF0 562 aaKnown RBP14.19□□□□□ -0.14
PTPN4-205ENST00000433888 NPM1P06748 294 aaKnown RBP eCLIP14.18□□□□□ -0.14
PTPN4-205ENST00000433888 CLCN6P51797 869 aa14.15□□□□□ -0.14
PTPN4-205ENST00000433888 POTEIP0CG38 1075 aa14.09□□□□□ -0.15
PTPN4-205ENST00000433888 MIER1Q8N108 512 aa14.09□□□□□ -0.15
PTPN4-205ENST00000433888 PAK3O75914 559 aaPredicted RBP14.05□□□□□ -0.16
PTPN4-205ENST00000433888 PHF12Q96QT6 1004 aa14.03□□□□□ -0.16
PTPN4-205ENST00000433888 GALR2O43603 387 aaPredicted RBP14.01□□□□□ -0.17
PTPN4-205ENST00000433888 PLEKHG5O94827 1062 aa13.99□□□□□ -0.17
PTPN4-205ENST00000433888 PLCD3Q8N3E9 789 aa13.97□□□□□ -0.17
PTPN4-205ENST00000433888 TSPYL2Q9H2G4 693 aaPredicted RBP13.95□□□□□ -0.18
PTPN4-205ENST00000433888 CCDC61Q9Y6R9 512 aa13.94□□□□□ -0.18
PTPN4-205ENST00000433888 RASEFQ8IZ41 740 aa13.92□□□□□ -0.18
PTPN4-205ENST00000433888 DCBLD2Q96PD2 775 aa13.92□□□□□ -0.18
PTPN4-205ENST00000433888 FBXO3Q9UK99 471 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms