RNA–Protein interactions for RNA: ENST00000432306.5

VTI1A-202, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 1 (best) BASIC

Gene VTI1A, Length 1,738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-202ENST00000432306 AEBP2Q6ZN18 517 aaPredicted RBP20.38■□□□□ 0.85
VTI1A-202ENST00000432306 CHIC1Q5VXU3 224 aa20.23■□□□□ 0.83
VTI1A-202ENST00000432306 PHF23Q9BUL5 403 aaPredicted RBP17.89■□□□□ 0.46
VTI1A-202ENST00000432306 SENP3Q9H4L4 574 aaPredicted RBP17.12■□□□□ 0.33
VTI1A-202ENST00000432306 NISCHQ9Y2I1 1504 aa16.59■□□□□ 0.25
VTI1A-202ENST00000432306 PLPPR3Q6T4P5 718 aa16.56■□□□□ 0.24
VTI1A-202ENST00000432306 FOXD1Q16676 465 aa15.91■□□□□ 0.14
VTI1A-202ENST00000432306 PPP6R1Q9UPN7 881 aa15.66■□□□□ 0.1
VTI1A-202ENST00000432306 ADRA2BP18089 450 aa15.65■□□□□ 0.1
VTI1A-202ENST00000432306 SLC24A1O60721 1099 aa15.51■□□□□ 0.07
VTI1A-202ENST00000432306 ABCC9O60706 1549 aa15.36■□□□□ 0.05
VTI1A-202ENST00000432306 CCDC180Q9P1Z9 1646 aa15.11■□□□□ 0.01
VTI1A-202ENST00000432306 PIAS4Q8N2W9 510 aaPredicted RBP15.06■□□□□ 0
VTI1A-202ENST00000432306 KCNA4P22459 653 aa14.84□□□□□ -0.03
VTI1A-202ENST00000432306 PPP4R3CPQ6ZMV5 832 aa14.68□□□□□ -0.06
VTI1A-202ENST00000432306 EHMT2Q96KQ7 1210 aa14.65□□□□□ -0.06
VTI1A-202ENST00000432306 DNAJC5BQ9UF47 199 aa14.65□□□□□ -0.06
VTI1A-202ENST00000432306 RB1CC1Q8TDY2 1594 aa14.53□□□□□ -0.08
VTI1A-202ENST00000432306 MSH5O43196 834 aa14.43□□□□□ -0.1
VTI1A-202ENST00000432306 NACADO15069 1562 aa14.34□□□□□ -0.11
VTI1A-202ENST00000432306 NCBP3Q53F19 620 aaKnown RBP14.33□□□□□ -0.12
VTI1A-202ENST00000432306 NPM3O75607 178 aaKnown RBP14.22□□□□□ -0.13
VTI1A-202ENST00000432306 UNC13AQ9UPW8 1703 aa14.22□□□□□ -0.13
VTI1A-202ENST00000432306 PABPN1Q86U42 306 aaKnown RBP eCLIP14.2□□□□□ -0.14
VTI1A-202ENST00000432306 SCAF1Q9H7N4 1312 aaKnown RBP14.18□□□□□ -0.14
VTI1A-202ENST00000432306 SLC4A1APQ9BWU0 796 aaKnown RBP14.15□□□□□ -0.14
VTI1A-202ENST00000432306 CNKSR2Q8WXI2 1034 aa14.15□□□□□ -0.14
VTI1A-202ENST00000432306 DCAF8L2P0C7V8 631 aa14.12□□□□□ -0.15
VTI1A-202ENST00000432306 MAPK8IP2Q13387 824 aaPredicted RBP14.1□□□□□ -0.15
VTI1A-202ENST00000432306 BICRAQ9NZM4 1560 aa14.07□□□□□ -0.16
VTI1A-202ENST00000432306 RTN4Q9NQC3 1192 aaKnown RBP14.05□□□□□ -0.16
VTI1A-202ENST00000432306 MYO15BQ96JP2 1530 aa14.03□□□□□ -0.16
VTI1A-202ENST00000432306 AMER1Q5JTC6 1135 aaPredicted RBP14.02□□□□□ -0.16
VTI1A-202ENST00000432306 DAXXQ9UER7 740 aaPredicted RBP13.95□□□□□ -0.18
VTI1A-202ENST00000432306 CSRNP3Q8WYN3 585 aa13.92□□□□□ -0.18
VTI1A-202ENST00000432306 SHROOM4Q9ULL8 1493 aa13.92□□□□□ -0.18
VTI1A-202ENST00000432306 CECR2Q9BXF3 1484 aa13.89□□□□□ -0.19
VTI1A-202ENST00000432306 CC2D2AQ9P2K1 1620 aa13.89□□□□□ -0.19
VTI1A-202ENST00000432306 RNF216Q9NWF9 866 aaPredicted RBP13.78□□□□□ -0.2
VTI1A-202ENST00000432306 DNAJC5Q9H3Z4 198 aa13.77□□□□□ -0.21
VTI1A-202ENST00000432306 EIF4G1Q04637 1599 aaKnown RBP13.77□□□□□ -0.21
VTI1A-202ENST00000432306 DMRT2Q9Y5R5 561 aa13.76□□□□□ -0.21
VTI1A-202ENST00000432306 DCAF1Q9Y4B6 1507 aa13.72□□□□□ -0.21
VTI1A-202ENST00000432306 ZBTB22O15209 634 aa13.71□□□□□ -0.21
VTI1A-202ENST00000432306 SCRIBQ14160 1630 aa13.68□□□□□ -0.22
VTI1A-202ENST00000432306 ZCCHC6Q5VYS8 1495 aaKnown RBP13.67□□□□□ -0.22
VTI1A-202ENST00000432306 HOXD11P31277 338 aaPredicted RBP13.64□□□□□ -0.23
VTI1A-202ENST00000432306 FOXD4L1Q9NU39 408 aa13.49□□□□□ -0.25
VTI1A-202ENST00000432306 CUX2O14529 1486 aa13.43□□□□□ -0.26
VTI1A-202ENST00000432306 HRCP23327 699 aa13.38□□□□□ -0.27
VTI1A-202ENST00000432306 SLC4A2P04920 1241 aa13.36□□□□□ -0.27
VTI1A-202ENST00000432306 ARXQ96QS3 562 aa13.36□□□□□ -0.27
VTI1A-202ENST00000432306 ERCC6Q03468 1493 aa13.32□□□□□ -0.28
VTI1A-202ENST00000432306 PRKCSHP14314 528 aaPredicted RBP13.23□□□□□ -0.29
VTI1A-202ENST00000432306 NCAPD3P42695 1498 aa13.21□□□□□ -0.3
VTI1A-202ENST00000432306 DCAF8L1A6NGE4 600 aa13.12□□□□□ -0.31
VTI1A-202ENST00000432306 TTBK1Q5TCY1 1321 aaPredicted RBP13.12□□□□□ -0.31
VTI1A-202ENST00000432306 SUPT5HO00267 1087 aaKnown RBP13.11□□□□□ -0.31
VTI1A-202ENST00000432306 HMGXB3Q12766 1538 aa13.11□□□□□ -0.31
VTI1A-202ENST00000432306 ATAD2BQ9ULI0 1458 aa13.1□□□□□ -0.31
VTI1A-202ENST00000432306 SMARCA2P51531 1590 aa13.1□□□□□ -0.31
VTI1A-202ENST00000432306 MYCNP04198 464 aaPredicted RBP13.08□□□□□ -0.32
VTI1A-202ENST00000432306 NESP48681 1621 aa13.08□□□□□ -0.32
VTI1A-202ENST00000432306 THOC2Q8NI27 1593 aaKnown RBP13.07□□□□□ -0.32
VTI1A-202ENST00000432306 TAOK2Q9UL54 1235 aa13.06□□□□□ -0.32
VTI1A-202ENST00000432306 BCANQ96GW7 911 aa13.05□□□□□ -0.32
VTI1A-202ENST00000432306 SMARCA4P51532 1647 aa13.04□□□□□ -0.32
VTI1A-202ENST00000432306 TRIM41Q8WV44 630 aa13.01□□□□□ -0.33
VTI1A-202ENST00000432306 TIMELESSQ9UNS1 1208 aa13.01□□□□□ -0.33
VTI1A-202ENST00000432306 LAMC3Q9Y6N6 1575 aa13.01□□□□□ -0.33
VTI1A-202ENST00000432306 BAZ1BQ9UIG0 1483 aaKnown RBP12.98□□□□□ -0.33
VTI1A-202ENST00000432306 KIF21AQ7Z4S6 1674 aa12.97□□□□□ -0.33
VTI1A-202ENST00000432306 PELP1Q8IZL8 1130 aaKnown RBP12.96□□□□□ -0.33
VTI1A-202ENST00000432306 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.96□□□□□ -0.345e-7■■■□□ 19.2
VTI1A-202ENST00000432306 ATXN8OSP0DMR3 200 aa12.94□□□□□ -0.34
VTI1A-202ENST00000432306 PCGF6Q9BYE7 350 aa12.93□□□□□ -0.34
VTI1A-202ENST00000432306 BAZ1AQ9NRL2 1556 aaPredicted RBP12.93□□□□□ -0.34
VTI1A-202ENST00000432306 PDS5BQ9NTI5 1447 aa12.92□□□□□ -0.34
VTI1A-202ENST00000432306 APLP2Q06481 763 aa12.92□□□□□ -0.34
VTI1A-202ENST00000432306 PEG3Q9GZU2 1588 aa12.92□□□□□ -0.34
VTI1A-202ENST00000432306 HOMEZQ8IX15 550 aa12.9□□□□□ -0.34
VTI1A-202ENST00000432306 RANGAP1P46060 587 aaPredicted RBP12.89□□□□□ -0.35
VTI1A-202ENST00000432306 MYT1Q01538 1121 aa12.88□□□□□ -0.35
VTI1A-202ENST00000432306 U3KPZ7 1027 aaPredicted RBP12.86□□□□□ -0.35
VTI1A-202ENST00000432306 TULP1O00294 542 aaPredicted RBP12.85□□□□□ -0.35
VTI1A-202ENST00000432306 MRC2Q9UBG0 1479 aa12.82□□□□□ -0.36
VTI1A-202ENST00000432306 PLCB2Q00722 1185 aa12.82□□□□□ -0.36
VTI1A-202ENST00000432306 WDR62O43379 1518 aa12.8□□□□□ -0.36
VTI1A-202ENST00000432306 PPARGC1BQ86YN6 1023 aaKnown RBP12.8□□□□□ -0.36
VTI1A-202ENST00000432306 ATF5Q9Y2D1 282 aaPredicted RBP12.8□□□□□ -0.36
VTI1A-202ENST00000432306 TRIM26Q12899 539 aaPredicted RBP12.79□□□□□ -0.36
VTI1A-202ENST00000432306 ERICH6Q7L0X2 663 aa12.79□□□□□ -0.36
VTI1A-202ENST00000432306 CADPSQ9ULU8 1353 aa12.78□□□□□ -0.36
VTI1A-202ENST00000432306 TPRNQ4KMQ1 711 aa12.78□□□□□ -0.36
VTI1A-202ENST00000432306 ZEB1P37275 1124 aaPredicted RBP12.76□□□□□ -0.37
VTI1A-202ENST00000432306 MROH2BQ7Z745 1585 aa12.75□□□□□ -0.37
VTI1A-202ENST00000432306 OSCARQ8IYS5 282 aa12.74□□□□□ -0.37
VTI1A-202ENST00000432306 SAMD1Q6SPF0 538 aaPredicted RBP12.72□□□□□ -0.37
VTI1A-202ENST00000432306 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.71□□□□□ -0.37
VTI1A-202ENST00000432306 HNRNPUL2Q1KMD3 747 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms