RNA–Protein interactions for RNA: ENST00000429921.5

RPE-206, Transcript of ribulose-5-phosphate-3-epimerase, humanhuman

TSL 1 (best) BASIC

Gene RPE, Length 2,511 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPE-206ENST00000429921 NISCHQ9Y2I1 1504 aa21.86■■□□□ 1.09
RPE-206ENST00000429921 AEBP2Q6ZN18 517 aaPredicted RBP21.11■□□□□ 0.97
RPE-206ENST00000429921 CHIC1Q5VXU3 224 aa20.15■□□□□ 0.82
RPE-206ENST00000429921 SHROOM4Q9ULL8 1493 aa18.67■□□□□ 0.58
RPE-206ENST00000429921 CCDC180Q9P1Z9 1646 aa18.65■□□□□ 0.58
RPE-206ENST00000429921 DCAF8L2P0C7V8 631 aa18.6■□□□□ 0.57
RPE-206ENST00000429921 ZCCHC6Q5VYS8 1495 aaKnown RBP18.38■□□□□ 0.53
RPE-206ENST00000429921 SUPT5HO00267 1087 aaKnown RBP18.1■□□□□ 0.49
RPE-206ENST00000429921 ABCC9O60706 1549 aa17.91■□□□□ 0.46
RPE-206ENST00000429921 SENP3Q9H4L4 574 aaPredicted RBP17.8■□□□□ 0.44
RPE-206ENST00000429921 PHF23Q9BUL5 403 aaPredicted RBP17.79■□□□□ 0.44
RPE-206ENST00000429921 DCAF1Q9Y4B6 1507 aa17.77■□□□□ 0.44
RPE-206ENST00000429921 SCRIBQ14160 1630 aa17.65■□□□□ 0.42
RPE-206ENST00000429921 NACADO15069 1562 aa17.37■□□□□ 0.37
RPE-206ENST00000429921 MYO15BQ96JP2 1530 aa17.36■□□□□ 0.37
RPE-206ENST00000429921 RB1CC1Q8TDY2 1594 aa17.22■□□□□ 0.35
RPE-206ENST00000429921 CECR2Q9BXF3 1484 aa17.21■□□□□ 0.34
RPE-206ENST00000429921 RSF1Q96T23 1441 aaPredicted RBP17.2■□□□□ 0.34
RPE-206ENST00000429921 PABPN1Q86U42 306 aaKnown RBP eCLIP17.14■□□□□ 0.33
RPE-206ENST00000429921 MROH2BQ7Z745 1585 aa17.06■□□□□ 0.32
RPE-206ENST00000429921 UNC13AQ9UPW8 1703 aa17.02■□□□□ 0.32
RPE-206ENST00000429921 WIZO95785 1651 aa16.97■□□□□ 0.31
RPE-206ENST00000429921 LOC105371045A0A1W2PR82 267 aa16.89■□□□□ 0.29
RPE-206ENST00000429921 BICRAQ9NZM4 1560 aa16.82■□□□□ 0.28
RPE-206ENST00000429921 EHMT2Q96KQ7 1210 aa16.81■□□□□ 0.28
RPE-206ENST00000429921 FAM9AQ8IZU1 332 aaPredicted RBP16.8■□□□□ 0.28
RPE-206ENST00000429921 TRIM41Q8WV44 630 aa16.78■□□□□ 0.28
RPE-206ENST00000429921 BAZ1AQ9NRL2 1556 aaPredicted RBP16.78■□□□□ 0.28
RPE-206ENST00000429921 SMARCA4P51532 1647 aa16.73■□□□□ 0.27
RPE-206ENST00000429921 FOXD1Q16676 465 aa16.68■□□□□ 0.26
RPE-206ENST00000429921 CCDC88BA6NC98 1476 aa16.59■□□□□ 0.25
RPE-206ENST00000429921 TOP2AP11388 1531 aaKnown RBP16.57■□□□□ 0.24
RPE-206ENST00000429921 SMARCA2P51531 1590 aa16.51■□□□□ 0.23
RPE-206ENST00000429921 ABCC8Q09428 1581 aa16.49■□□□□ 0.23
RPE-206ENST00000429921 PCGF6Q9BYE7 350 aa16.44■□□□□ 0.22
RPE-206ENST00000429921 ATAD2BQ9ULI0 1458 aa16.42■□□□□ 0.22
RPE-206ENST00000429921 EIF4G1Q04637 1599 aaKnown RBP16.42■□□□□ 0.22
RPE-206ENST00000429921 BAZ1BQ9UIG0 1483 aaKnown RBP16.37■□□□□ 0.21
RPE-206ENST00000429921 PEG3Q9GZU2 1588 aa16.31■□□□□ 0.2
RPE-206ENST00000429921 PPARGC1BQ86YN6 1023 aaKnown RBP16.28■□□□□ 0.2
RPE-206ENST00000429921 SOGA1O94964 1423 aa16.26■□□□□ 0.19
RPE-206ENST00000429921 RUSC2Q8N2Y8 1516 aa16.23■□□□□ 0.19
RPE-206ENST00000429921 PLPPR3Q6T4P5 718 aa16.17■□□□□ 0.18
RPE-206ENST00000429921 WRNQ14191 1432 aaPredicted RBP eCLIP16.17■□□□□ 0.18
RPE-206ENST00000429921 TTBK1Q5TCY1 1321 aaPredicted RBP16.12■□□□□ 0.17
RPE-206ENST00000429921 SYNJ1O43426 1573 aa16.12■□□□□ 0.17
RPE-206ENST00000429921 NCAPD3P42695 1498 aa16.11■□□□□ 0.17
RPE-206ENST00000429921 UBTFP17480 764 aaKnown RBP16.09■□□□□ 0.17
RPE-206ENST00000429921 CSRNP3Q8WYN3 585 aa16.08■□□□□ 0.17
RPE-206ENST00000429921 RANGAP1P46060 587 aaPredicted RBP16.07■□□□□ 0.16
RPE-206ENST00000429921 TRIM26Q12899 539 aaPredicted RBP16.06■□□□□ 0.16
RPE-206ENST00000429921 HMGXB3Q12766 1538 aa16.03■□□□□ 0.16
RPE-206ENST00000429921 CC2D2AQ9P2K1 1620 aa16.03■□□□□ 0.16
RPE-206ENST00000429921 HRCP23327 699 aa16.01■□□□□ 0.15
RPE-206ENST00000429921 DNAJC5BQ9UF47 199 aa15.98■□□□□ 0.15
RPE-206ENST00000429921 CEP162Q5TB80 1403 aa15.92■□□□□ 0.14
RPE-206ENST00000429921 CFTRP13569 1480 aa15.9■□□□□ 0.14
RPE-206ENST00000429921 CUX1P39880 1505 aa15.89■□□□□ 0.13
RPE-206ENST00000429921 TOP2BQ02880 1626 aa15.87■□□□□ 0.13
RPE-206ENST00000429921 EEA1Q15075 1411 aa15.86■□□□□ 0.13
RPE-206ENST00000429921 PPP6R1Q9UPN7 881 aa15.86■□□□□ 0.13
RPE-206ENST00000429921 TNIKQ9UKE5 1360 aa15.86■□□□□ 0.13
RPE-206ENST00000429921 GOLGA3Q08378 1498 aa15.84■□□□□ 0.13
RPE-206ENST00000429921 CADPSQ9ULU8 1353 aa15.84■□□□□ 0.13
RPE-206ENST00000429921 NESP48681 1621 aa15.84■□□□□ 0.13
RPE-206ENST00000429921 RAPGEF2Q9Y4G8 1499 aa15.84■□□□□ 0.13
RPE-206ENST00000429921 ADRA2BP18089 450 aa15.81■□□□□ 0.12
RPE-206ENST00000429921 BIVM-ERCC5R4GMW8 1640 aa15.8■□□□□ 0.12
RPE-206ENST00000429921 CEP164Q9UPV0 1460 aa15.78■□□□□ 0.12
RPE-206ENST00000429921 KIF21BO75037 1637 aa15.71■□□□□ 0.11
RPE-206ENST00000429921 CLIP1P30622 1438 aa15.71■□□□□ 0.11
RPE-206ENST00000429921 FANCD2Q9BXW9 1451 aa15.71■□□□□ 0.11
RPE-206ENST00000429921 CUX2O14529 1486 aa15.68■□□□□ 0.1
RPE-206ENST00000429921 KIF27Q86VH2 1401 aa15.68■□□□□ 0.1
RPE-206ENST00000429921 FGD5Q6ZNL6 1462 aa15.67■□□□□ 0.1
RPE-206ENST00000429921 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.67■□□□□ 0.1
RPE-206ENST00000429921 PRDM2Q13029 1718 aa15.67■□□□□ 0.1
RPE-206ENST00000429921 RAD54L2Q9Y4B4 1467 aa15.65■□□□□ 0.1
RPE-206ENST00000429921 PIAS4Q8N2W9 510 aaPredicted RBP15.64■□□□□ 0.09
RPE-206ENST00000429921 PRXQ9BXM0 1461 aa15.62■□□□□ 0.09
RPE-206ENST00000429921 IGF1RP08069 1367 aa15.59■□□□□ 0.09
RPE-206ENST00000429921 APLP2Q06481 763 aa15.56■□□□□ 0.08
RPE-206ENST00000429921 P3H3Q8IVL6 736 aa15.56■□□□□ 0.08
RPE-206ENST00000429921 TOPBP1Q92547 1522 aa15.55■□□□□ 0.08
RPE-206ENST00000429921 HNRNPUL2Q1KMD3 747 aaKnown RBP15.55■□□□□ 0.08
RPE-206ENST00000429921 CCER1Q8TC90 406 aaPredicted RBP15.54■□□□□ 0.08
RPE-206ENST00000429921 VPS8Q8N3P4 1428 aa15.53■□□□□ 0.08
RPE-206ENST00000429921 POLA1P09884 1462 aaPredicted RBP15.53■□□□□ 0.08
RPE-206ENST00000429921 CARMIL1Q5VZK9 1371 aa15.52■□□□□ 0.08
RPE-206ENST00000429921 URB2Q14146 1524 aaKnown RBP15.52■□□□□ 0.07
RPE-206ENST00000429921 ERICH3Q5RHP9 1530 aa15.51■□□□□ 0.07
RPE-206ENST00000429921 TDRD9Q8NDG6 1382 aaKnown RBP15.51■□□□□ 0.07
RPE-206ENST00000429921 DNMBPQ6XZF7 1577 aa15.5■□□□□ 0.07
RPE-206ENST00000429921 ARAP1Q96P48 1450 aa15.5■□□□□ 0.07
RPE-206ENST00000429921 KANK4Q5T7N3 995 aaPredicted RBP15.49■□□□□ 0.07
RPE-206ENST00000429921 KIF21AQ7Z4S6 1674 aa15.47■□□□□ 0.07
RPE-206ENST00000429921 LAMC3Q9Y6N6 1575 aa15.47■□□□□ 0.07
RPE-206ENST00000429921 ATP1B4Q9UN42 357 aaPredicted RBP15.47■□□□□ 0.07
RPE-206ENST00000429921 PDS5BQ9NTI5 1447 aa15.44■□□□□ 0.06
RPE-206ENST00000429921 ARHGAP35Q9NRY4 1499 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms