RNA–Protein interactions for RNA: ENST00000429416.7

SMARCA4-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2 BASIC

Gene SMARCA4, Length 5,691 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-203ENST00000429416 DCAF8L2P0C7V8 631 aa31.58■■■□□ 2.65
SMARCA4-203ENST00000429416 NISCHQ9Y2I1 1504 aa30.5■■■□□ 2.47
SMARCA4-203ENST00000429416 SUPT5HO00267 1087 aaKnown RBP29.08■■■□□ 2.25
SMARCA4-203ENST00000429416 SHROOM4Q9ULL8 1493 aa29.01■■■□□ 2.23
SMARCA4-203ENST00000429416 EHMT2Q96KQ7 1210 aa28.15■■■□□ 2.1
SMARCA4-203ENST00000429416 FAM9AQ8IZU1 332 aaPredicted RBP27.45■■□□□ 1.98
SMARCA4-203ENST00000429416 APLP2Q06481 763 aa27.31■■□□□ 1.96
SMARCA4-203ENST00000429416 RANGAP1P46060 587 aaPredicted RBP27.21■■□□□ 1.95
SMARCA4-203ENST00000429416 ABCC9O60706 1549 aa27.13■■□□□ 1.93
SMARCA4-203ENST00000429416 TTBK1Q5TCY1 1321 aaPredicted RBP26.98■■□□□ 1.91
SMARCA4-203ENST00000429416 ATP1B4Q9UN42 357 aaPredicted RBP26.96■■□□□ 1.91
SMARCA4-203ENST00000429416 TRIM41Q8WV44 630 aa26.94■■□□□ 1.9
SMARCA4-203ENST00000429416 PABPN1Q86U42 306 aaKnown RBP eCLIP26.84■■□□□ 1.89
SMARCA4-203ENST00000429416 UBTFP17480 764 aaKnown RBP26.68■■□□□ 1.86
SMARCA4-203ENST00000429416 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.26■■□□□ 1.79
SMARCA4-203ENST00000429416 HNRNPUL2Q1KMD3 747 aaKnown RBP26.26■■□□□ 1.79
SMARCA4-203ENST00000429416 MYT1LQ9UL68 1186 aa26.17■■□□□ 1.78
SMARCA4-203ENST00000429416 PCGF6Q9BYE7 350 aa26.11■■□□□ 1.77
SMARCA4-203ENST00000429416 PPARGC1BQ86YN6 1023 aaKnown RBP25.93■■□□□ 1.74
SMARCA4-203ENST00000429416 FBLN2P98095 1184 aa25.84■■□□□ 1.73
SMARCA4-203ENST00000429416 CCER1Q8TC90 406 aaPredicted RBP25.76■■□□□ 1.71
SMARCA4-203ENST00000429416 ITGAEP38570 1179 aa25.73■■□□□ 1.71
SMARCA4-203ENST00000429416 CHIC1Q5VXU3 224 aa25.66■■□□□ 1.7
SMARCA4-203ENST00000429416 LOC105371045A0A1W2PR82 267 aa25.53■■□□□ 1.68
SMARCA4-203ENST00000429416 SCRIBQ14160 1630 aa25.52■■□□□ 1.68
SMARCA4-203ENST00000429416 PELP1Q8IZL8 1130 aaKnown RBP25.21■■□□□ 1.63
SMARCA4-203ENST00000429416 POLR3GLQ9BT43 218 aa25.21■■□□□ 1.63
SMARCA4-203ENST00000429416 ARID3CA6NKF2 412 aa25.19■■□□□ 1.62
SMARCA4-203ENST00000429416 ZEB1P37275 1124 aaPredicted RBP25.19■■□□□ 1.62
SMARCA4-203ENST00000429416 CCDC180Q9P1Z9 1646 aa25.17■■□□□ 1.62
SMARCA4-203ENST00000429416 FAM50AQ14320 339 aaKnown RBP25.15■■□□□ 1.62
SMARCA4-203ENST00000429416 P3H3Q8IVL6 736 aa25.12■■□□□ 1.61
SMARCA4-203ENST00000429416 ZCCHC6Q5VYS8 1495 aaKnown RBP25.11■■□□□ 1.61
SMARCA4-203ENST00000429416 RB1CC1Q8TDY2 1594 aa25.09■■□□□ 1.61
SMARCA4-203ENST00000429416 TRIM26Q12899 539 aaPredicted RBP25.02■■□□□ 1.6
SMARCA4-203ENST00000429416 SLC4A1APQ9BWU0 796 aaKnown RBP24.99■■□□□ 1.59
SMARCA4-203ENST00000429416 CNGB1Q14028 1251 aaPredicted RBP24.96■■□□□ 1.59
SMARCA4-203ENST00000429416 TRIM52Q96A61 297 aa24.96■■□□□ 1.59
SMARCA4-203ENST00000429416 NPM1P06748 294 aaKnown RBP eCLIP24.88■■□□□ 1.57
SMARCA4-203ENST00000429416 CSRNP3Q8WYN3 585 aa24.83■■□□□ 1.57
SMARCA4-203ENST00000429416 ZNF777Q9ULD5 760 aaPredicted RBP24.81■■□□□ 1.56
SMARCA4-203ENST00000429416 PLPPR3Q6T4P5 718 aa24.74■■□□□ 1.55
SMARCA4-203ENST00000429416 CHMP7Q8WUX9 453 aaPredicted RBP24.74■■□□□ 1.55
SMARCA4-203ENST00000429416 YTHDC1Q96MU7 727 aaKnown RBP24.73■■□□□ 1.55
SMARCA4-203ENST00000429416 BCANQ96GW7 911 aa24.72■■□□□ 1.55
SMARCA4-203ENST00000429416 NACADO15069 1562 aa24.71■■□□□ 1.55
SMARCA4-203ENST00000429416 CENPBP07199 599 aaPredicted RBP24.69■■□□□ 1.54
SMARCA4-203ENST00000429416 CDK11AQ9UQ88 783 aaPredicted RBP24.69■■□□□ 1.54
SMARCA4-203ENST00000429416 ESF1Q9H501 851 aaKnown RBP24.68■■□□□ 1.54
SMARCA4-203ENST00000429416 ZNF326Q5BKZ1 582 aaKnown RBP24.63■■□□□ 1.53
SMARCA4-203ENST00000429416 NEUROD1Q13562 356 aa24.6■■□□□ 1.53
SMARCA4-203ENST00000429416 NEFLP07196 543 aa24.53■■□□□ 1.52
SMARCA4-203ENST00000429416 ERCC6Q03468 1493 aa24.52■■□□□ 1.52
SMARCA4-203ENST00000429416 BAZ1BQ9UIG0 1483 aaKnown RBP24.46■■□□□ 1.51
SMARCA4-203ENST00000429416 STAG3Q9UJ98 1225 aa24.38■■□□□ 1.49
SMARCA4-203ENST00000429416 CHGAP10645 457 aaKnown RBP24.35■■□□□ 1.49
SMARCA4-203ENST00000429416 KCNH8Q96L42 1107 aa24.29■■□□□ 1.48
SMARCA4-203ENST00000429416 RSF1Q96T23 1441 aaPredicted RBP24.26■■□□□ 1.47
SMARCA4-203ENST00000429416 HRCP23327 699 aa24.23■■□□□ 1.47
SMARCA4-203ENST00000429416 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.2■■□□□ 1.462e-8■■■□□ 18
SMARCA4-203ENST00000429416 ERICH6Q7L0X2 663 aa24.19■■□□□ 1.46
SMARCA4-203ENST00000429416 CHIC2Q9UKJ5 165 aa24.15■■□□□ 1.46
SMARCA4-203ENST00000429416 SLC24A1O60721 1099 aa24.11■■□□□ 1.45
SMARCA4-203ENST00000429416 TSPY4P0CV99 314 aa24.1■■□□□ 1.45
SMARCA4-203ENST00000429416 TSPY10P0CW01 314 aa24.1■■□□□ 1.45
SMARCA4-203ENST00000429416 TRHP20396 242 aaPredicted RBP24.1■■□□□ 1.45
SMARCA4-203ENST00000429416 CECR2Q9BXF3 1484 aa24.08■■□□□ 1.45
SMARCA4-203ENST00000429416 MTUS2Q5JR59 1369 aa24.05■■□□□ 1.44
SMARCA4-203ENST00000429416 PLEKHD1A6NEE1 506 aa24.04■■□□□ 1.44
SMARCA4-203ENST00000429416 BAZ1AQ9NRL2 1556 aaPredicted RBP24.04■■□□□ 1.44
SMARCA4-203ENST00000429416 WRNQ14191 1432 aaPredicted RBP eCLIP24.02■■□□□ 1.445e-6■■□□□ 12.5
SMARCA4-203ENST00000429416 ARID4BQ4LE39 1312 aaPredicted RBP24.02■■□□□ 1.44
SMARCA4-203ENST00000429416 SENP3Q9H4L4 574 aaPredicted RBP23.95■■□□□ 1.42
SMARCA4-203ENST00000429416 DCAF1Q9Y4B6 1507 aa23.91■■□□□ 1.42
SMARCA4-203ENST00000429416 KIF27Q86VH2 1401 aa23.91■■□□□ 1.42
SMARCA4-203ENST00000429416 NEFMP07197 916 aa23.86■■□□□ 1.41
SMARCA4-203ENST00000429416 CLIP1P30622 1438 aa23.83■■□□□ 1.41
SMARCA4-203ENST00000429416 PDS5BQ9NTI5 1447 aa23.82■■□□□ 1.4
SMARCA4-203ENST00000429416 DIEXFQ68CQ4 756 aaKnown RBP23.8■■□□□ 1.4
SMARCA4-203ENST00000429416 SCAF1Q9H7N4 1312 aaKnown RBP23.78■■□□□ 1.4
SMARCA4-203ENST00000429416 ANP32CO43423 234 aa23.77■■□□□ 1.4
SMARCA4-203ENST00000429416 PPP1R15AO75807 674 aaPredicted RBP23.76■■□□□ 1.39
SMARCA4-203ENST00000429416 KDM2AQ9Y2K7 1162 aa23.74■■□□□ 1.39
SMARCA4-203ENST00000429416 RRP7BPQ9NSQ0 103 aa23.74■■□□□ 1.39
SMARCA4-203ENST00000429416 CFDP1Q9UEE9 299 aaPredicted RBP23.73■■□□□ 1.39
SMARCA4-203ENST00000429416 TONSLQ96HA7 1378 aa23.72■■□□□ 1.39
SMARCA4-203ENST00000429416 CLSPNQ9HAW4 1339 aa23.72■■□□□ 1.39
SMARCA4-203ENST00000429416 C14orf37Q86TY3 774 aa23.71■■□□□ 1.39
SMARCA4-203ENST00000429416 DAXXQ9UER7 740 aaPredicted RBP23.71■■□□□ 1.39
SMARCA4-203ENST00000429416 PLEKHG5O94827 1062 aa23.71■■□□□ 1.39
SMARCA4-203ENST00000429416 SMARCA2P51531 1590 aa23.7■■□□□ 1.38
SMARCA4-203ENST00000429416 CUX2O14529 1486 aa23.7■■□□□ 1.38
SMARCA4-203ENST00000429416 EIF4G1Q04637 1599 aaKnown RBP23.67■■□□□ 1.38
SMARCA4-203ENST00000429416 MROH2BQ7Z745 1585 aa23.66■■□□□ 1.38
SMARCA4-203ENST00000429416 BCL11AQ9H165 835 aa23.66■■□□□ 1.38
SMARCA4-203ENST00000429416 EEA1Q15075 1411 aa23.66■■□□□ 1.38
SMARCA4-203ENST00000429416 GOLGA3Q08378 1498 aa23.65■■□□□ 1.38
SMARCA4-203ENST00000429416 TDRD9Q8NDG6 1382 aaKnown RBP23.64■■□□□ 1.38
SMARCA4-203ENST00000429416 CARMIL1Q5VZK9 1371 aa23.61■■□□□ 1.37
SMARCA4-203ENST00000429416 MLECQ14165 292 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms