RNA–Protein interactions for RNA: ENST00000426253.5

NIF3L1-207, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 5

Gene NIF3L1, Length 749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-207ENST00000426253 CHIC1Q5VXU3 224 aa20.34■□□□□ 0.85
NIF3L1-207ENST00000426253 AEBP2Q6ZN18 517 aaPredicted RBP20.34■□□□□ 0.85
NIF3L1-207ENST00000426253 PHF23Q9BUL5 403 aaPredicted RBP17.92■□□□□ 0.46
NIF3L1-207ENST00000426253 SENP3Q9H4L4 574 aaPredicted RBP17.23■□□□□ 0.35
NIF3L1-207ENST00000426253 PLPPR3Q6T4P5 718 aa16.73■□□□□ 0.27
NIF3L1-207ENST00000426253 FOXD1Q16676 465 aa15.91■□□□□ 0.14
NIF3L1-207ENST00000426253 ADRA2BP18089 450 aa15.65■□□□□ 0.1
NIF3L1-207ENST00000426253 PPP6R1Q9UPN7 881 aa15.65■□□□□ 0.1
NIF3L1-207ENST00000426253 PIAS4Q8N2W9 510 aaPredicted RBP15.09■□□□□ 0.01
NIF3L1-207ENST00000426253 NISCHQ9Y2I1 1504 aa14.92□□□□□ -0.02
NIF3L1-207ENST00000426253 KCNA4P22459 653 aa14.91□□□□□ -0.02
NIF3L1-207ENST00000426253 PPP4R3CPQ6ZMV5 832 aa14.79□□□□□ -0.04
NIF3L1-207ENST00000426253 ABCC9O60706 1549 aa14.68□□□□□ -0.06
NIF3L1-207ENST00000426253 NCBP3Q53F19 620 aaKnown RBP14.55□□□□□ -0.08
NIF3L1-207ENST00000426253 MSH5O43196 834 aa14.53□□□□□ -0.08
NIF3L1-207ENST00000426253 DNAJC5BQ9UF47 199 aa14.47□□□□□ -0.09
NIF3L1-207ENST00000426253 SCAF1Q9H7N4 1312 aaKnown RBP14.4□□□□□ -0.1
NIF3L1-207ENST00000426253 EHMT2Q96KQ7 1210 aa14.34□□□□□ -0.11
NIF3L1-207ENST00000426253 NPM3O75607 178 aaKnown RBP14.3□□□□□ -0.12
NIF3L1-207ENST00000426253 CNKSR2Q8WXI2 1034 aa14.3□□□□□ -0.12
NIF3L1-207ENST00000426253 SLC4A1APQ9BWU0 796 aaKnown RBP14.3□□□□□ -0.12
NIF3L1-207ENST00000426253 MAPK8IP2Q13387 824 aaPredicted RBP14.07□□□□□ -0.16
NIF3L1-207ENST00000426253 CSRNP3Q8WYN3 585 aa14.05□□□□□ -0.16
NIF3L1-207ENST00000426253 DNAJC5Q9H3Z4 198 aa13.91□□□□□ -0.18
NIF3L1-207ENST00000426253 RNF216Q9NWF9 866 aaPredicted RBP13.91□□□□□ -0.18
NIF3L1-207ENST00000426253 DMRT2Q9Y5R5 561 aa13.82□□□□□ -0.2
NIF3L1-207ENST00000426253 CCDC180Q9P1Z9 1646 aa13.78□□□□□ -0.2
NIF3L1-207ENST00000426253 HOXD11P31277 338 aaPredicted RBP13.74□□□□□ -0.21
NIF3L1-207ENST00000426253 ZBTB22O15209 634 aa13.72□□□□□ -0.21
NIF3L1-207ENST00000426253 FOXD4L1Q9NU39 408 aa13.63□□□□□ -0.23
NIF3L1-207ENST00000426253 RB1CC1Q8TDY2 1594 aa13.56□□□□□ -0.24
NIF3L1-207ENST00000426253 PABPN1Q86U42 306 aaKnown RBP eCLIP13.54□□□□□ -0.24
NIF3L1-207ENST00000426253 SLC4A2P04920 1241 aa13.4□□□□□ -0.26
NIF3L1-207ENST00000426253 CECR2Q9BXF3 1484 aa13.29□□□□□ -0.28
NIF3L1-207ENST00000426253 UNC13AQ9UPW8 1703 aa13.25□□□□□ -0.29
NIF3L1-207ENST00000426253 NACADO15069 1562 aa13.23□□□□□ -0.29
NIF3L1-207ENST00000426253 MYCNP04198 464 aaPredicted RBP13.22□□□□□ -0.29
NIF3L1-207ENST00000426253 CC2D2AQ9P2K1 1620 aa13.19□□□□□ -0.3
NIF3L1-207ENST00000426253 ATXN8OSP0DMR3 200 aa13.17□□□□□ -0.3
NIF3L1-207ENST00000426253 BICRAQ9NZM4 1560 aa13.15□□□□□ -0.3
NIF3L1-207ENST00000426253 DCAF8L1A6NGE4 600 aa13.12□□□□□ -0.31
NIF3L1-207ENST00000426253 DCAF8L2P0C7V8 631 aa13.11□□□□□ -0.31
NIF3L1-207ENST00000426253 TRIM41Q8WV44 630 aa13.08□□□□□ -0.32
NIF3L1-207ENST00000426253 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.04□□□□□ -0.32
NIF3L1-207ENST00000426253 CUX2O14529 1486 aa12.96□□□□□ -0.34
NIF3L1-207ENST00000426253 EIF4G1Q04637 1599 aaKnown RBP12.94□□□□□ -0.34
NIF3L1-207ENST00000426253 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.93□□□□□ -0.34
NIF3L1-207ENST00000426253 HNRNPUL2Q1KMD3 747 aaKnown RBP12.93□□□□□ -0.34
NIF3L1-207ENST00000426253 SAMD1Q6SPF0 538 aaPredicted RBP12.89□□□□□ -0.35
NIF3L1-207ENST00000426253 U3KPZ7 1027 aaPredicted RBP12.88□□□□□ -0.35
NIF3L1-207ENST00000426253 SHROOM4Q9ULL8 1493 aa12.86□□□□□ -0.35
NIF3L1-207ENST00000426253 ATF5Q9Y2D1 282 aaPredicted RBP12.79□□□□□ -0.36
NIF3L1-207ENST00000426253 ERCC6Q03468 1493 aa12.77□□□□□ -0.37
NIF3L1-207ENST00000426253 APLP2Q06481 763 aa12.69□□□□□ -0.38
NIF3L1-207ENST00000426253 MYO15BQ96JP2 1530 aa12.68□□□□□ -0.38
NIF3L1-207ENST00000426253 FKBP8Q14318 412 aa12.64□□□□□ -0.39
NIF3L1-207ENST00000426253 ZNF219Q9P2Y4 722 aaPredicted RBP12.58□□□□□ -0.4
NIF3L1-207ENST00000426253 SCRIBQ14160 1630 aa12.57□□□□□ -0.4
NIF3L1-207ENST00000426253 RNF39Q9H2S5 420 aa12.48□□□□□ -0.41
NIF3L1-207ENST00000426253 POTEDQ86YR6 584 aa12.4□□□□□ -0.42
NIF3L1-207ENST00000426253 C1QBPQ07021 282 aaKnown RBP12.38□□□□□ -0.43
NIF3L1-207ENST00000426253 THOC2Q8NI27 1593 aaKnown RBP12.38□□□□□ -0.43
NIF3L1-207ENST00000426253 SPINK5Q9NQ38 1064 aaPredicted RBP12.37□□□□□ -0.43
NIF3L1-207ENST00000426253 TRHP20396 242 aaPredicted RBP12.35□□□□□ -0.43
NIF3L1-207ENST00000426253 AMER1Q5JTC6 1135 aaPredicted RBP12.35□□□□□ -0.43
NIF3L1-207ENST00000426253 NESP48681 1621 aa12.34□□□□□ -0.43
NIF3L1-207ENST00000426253 ZCCHC6Q5VYS8 1495 aaKnown RBP12.31□□□□□ -0.44
NIF3L1-207ENST00000426253 CAPN15O75808 1086 aa12.3□□□□□ -0.44
NIF3L1-207ENST00000426253 SMARCA2P51531 1590 aa12.29□□□□□ -0.44
NIF3L1-207ENST00000426253 POLA2Q14181 598 aa12.28□□□□□ -0.44
NIF3L1-207ENST00000426253 MKRN4PQ13434 485 aaPredicted RBP12.27□□□□□ -0.45
NIF3L1-207ENST00000426253 RTN4Q9NQC3 1192 aaKnown RBP12.27□□□□□ -0.45
NIF3L1-207ENST00000426253 BAZ1AQ9NRL2 1556 aaPredicted RBP12.26□□□□□ -0.45
NIF3L1-207ENST00000426253 FBLN2P98095 1184 aa12.26□□□□□ -0.45
NIF3L1-207ENST00000426253 DCAF1Q9Y4B6 1507 aa12.26□□□□□ -0.45
NIF3L1-207ENST00000426253 OSCARQ8IYS5 282 aa12.24□□□□□ -0.45
NIF3L1-207ENST00000426253 SPDYE4A6NLX3 237 aa12.22□□□□□ -0.45
NIF3L1-207ENST00000426253 RIMBP3CA6NJZ7 1639 aa12.2□□□□□ -0.46
NIF3L1-207ENST00000426253 RIMBP3BA6NNM3 1639 aa12.2□□□□□ -0.46
NIF3L1-207ENST00000426253 RIMBP3Q9UFD9 1639 aa12.2□□□□□ -0.46
NIF3L1-207ENST00000426253 NCAPD3P42695 1498 aa12.19□□□□□ -0.46
NIF3L1-207ENST00000426253 KIF21AQ7Z4S6 1674 aa12.17□□□□□ -0.46
NIF3L1-207ENST00000426253 FBXO3Q9UK99 471 aa12.14□□□□□ -0.47
NIF3L1-207ENST00000426253 ZBTB12Q9Y330 459 aaPredicted RBP12.14□□□□□ -0.47
NIF3L1-207ENST00000426253 PROM2Q8N271 834 aa12.13□□□□□ -0.47
NIF3L1-207ENST00000426253 ILDR1Q86SU0 546 aaPredicted RBP12.12□□□□□ -0.47
NIF3L1-207ENST00000426253 LAMC3Q9Y6N6 1575 aa12.09□□□□□ -0.47
NIF3L1-207ENST00000426253 ABCB7O75027 752 aa12.07□□□□□ -0.48
NIF3L1-207ENST00000426253 PDS5BQ9NTI5 1447 aa12.07□□□□□ -0.48
NIF3L1-207ENST00000426253 ATAD2BQ9ULI0 1458 aa12.06□□□□□ -0.48
NIF3L1-207ENST00000426253 ARHGEF11O15085 1522 aa12.06□□□□□ -0.48
NIF3L1-207ENST00000426253 CYB5RLQ6IPT4 315 aa12.05□□□□□ -0.48
NIF3L1-207ENST00000426253 HMGXB3Q12766 1538 aa12.04□□□□□ -0.48
NIF3L1-207ENST00000426253 MRC2Q9UBG0 1479 aa12.02□□□□□ -0.48
NIF3L1-207ENST00000426253 DSG3P32926 999 aa12.02□□□□□ -0.49
NIF3L1-207ENST00000426253 WDR62O43379 1518 aa12□□□□□ -0.49
NIF3L1-207ENST00000426253 BAZ1BQ9UIG0 1483 aaKnown RBP11.95□□□□□ -0.5
NIF3L1-207ENST00000426253 VASPP50552 380 aaPredicted RBP11.91□□□□□ -0.5
NIF3L1-207ENST00000426253 ARAP1Q96P48 1450 aa11.87□□□□□ -0.51
NIF3L1-207ENST00000426253 SMARCA4P51532 1647 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms