RNA–Protein interactions for RNA: ENST00000425804.1

R3HDM1-205, Transcript of R3H domain containing 1, humanhuman

TSL 2

Gene R3HDM1, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-205ENST00000425804 AEBP2Q6ZN18 517 aaPredicted RBP24.32■■□□□ 1.48
R3HDM1-205ENST00000425804 CHIC1Q5VXU3 224 aa22.69■■□□□ 1.22
R3HDM1-205ENST00000425804 SENP3Q9H4L4 574 aaPredicted RBP20.81■□□□□ 0.92
R3HDM1-205ENST00000425804 PHF23Q9BUL5 403 aaPredicted RBP20.46■□□□□ 0.87
R3HDM1-205ENST00000425804 FOXD1Q16676 465 aa19.49■□□□□ 0.71
R3HDM1-205ENST00000425804 POTEDQ86YR6 584 aa19.11■□□□□ 0.65
R3HDM1-205ENST00000425804 MSH5O43196 834 aa18.46■□□□□ 0.55
R3HDM1-205ENST00000425804 PIAS4Q8N2W9 510 aaPredicted RBP18.06■□□□□ 0.48
R3HDM1-205ENST00000425804 PPP6R1Q9UPN7 881 aa17.75■□□□□ 0.43
R3HDM1-205ENST00000425804 ADRA2BP18089 450 aa17.66■□□□□ 0.42
R3HDM1-205ENST00000425804 PLPPR3Q6T4P5 718 aa17.65■□□□□ 0.42
R3HDM1-205ENST00000425804 MAPK8IP2Q13387 824 aaPredicted RBP16.42■□□□□ 0.22
R3HDM1-205ENST00000425804 DMRT2Q9Y5R5 561 aa16.41■□□□□ 0.22
R3HDM1-205ENST00000425804 CACNB1Q02641 598 aaPredicted RBP16.24■□□□□ 0.19
R3HDM1-205ENST00000425804 SCAF1Q9H7N4 1312 aaKnown RBP16.12■□□□□ 0.17
R3HDM1-205ENST00000425804 DCAF8L1A6NGE4 600 aa15.79■□□□□ 0.12
R3HDM1-205ENST00000425804 RNF39Q9H2S5 420 aa15.71■□□□□ 0.11
R3HDM1-205ENST00000425804 HOXD11P31277 338 aaPredicted RBP15.55■□□□□ 0.08
R3HDM1-205ENST00000425804 C1QBPQ07021 282 aaKnown RBP15.42■□□□□ 0.06
R3HDM1-205ENST00000425804 PPP4R3CPQ6ZMV5 832 aa15.41■□□□□ 0.06
R3HDM1-205ENST00000425804 RNF216Q9NWF9 866 aaPredicted RBP15.27■□□□□ 0.04
R3HDM1-205ENST00000425804 CNKSR2Q8WXI2 1034 aa15.25■□□□□ 0.03
R3HDM1-205ENST00000425804 DNAJC5BQ9UF47 199 aa15.11■□□□□ 0.01
R3HDM1-205ENST00000425804 POTEHQ6S545 545 aa14.85□□□□□ -0.03
R3HDM1-205ENST00000425804 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.83□□□□□ -0.043e-7■□□□□ 8.6
R3HDM1-205ENST00000425804 NCBP3Q53F19 620 aaKnown RBP14.6□□□□□ -0.07
R3HDM1-205ENST00000425804 DSG3P32926 999 aa14.5□□□□□ -0.09
R3HDM1-205ENST00000425804 U3KPZ7 1027 aaPredicted RBP14.46□□□□□ -0.09
R3HDM1-205ENST00000425804 CAPN15O75808 1086 aa14.45□□□□□ -0.1
R3HDM1-205ENST00000425804 SPINK5Q9NQ38 1064 aaPredicted RBP14.45□□□□□ -0.1
R3HDM1-205ENST00000425804 NPM3O75607 178 aaKnown RBP14.42□□□□□ -0.1
R3HDM1-205ENST00000425804 ABCB7O75027 752 aa14.08□□□□□ -0.16
R3HDM1-205ENST00000425804 TRHP20396 242 aaPredicted RBP14.07□□□□□ -0.16
R3HDM1-205ENST00000425804 ZNF219Q9P2Y4 722 aaPredicted RBP13.99□□□□□ -0.17
R3HDM1-205ENST00000425804 APLP2Q06481 763 aa13.95□□□□□ -0.18
R3HDM1-205ENST00000425804 SLC4A2P04920 1241 aa13.94□□□□□ -0.18
R3HDM1-205ENST00000425804 RBM42Q9BTD8 480 aaKnown RBP13.83□□□□□ -0.2
R3HDM1-205ENST00000425804 CHRDL2Q6WN34 429 aa13.8□□□□□ -0.2
R3HDM1-205ENST00000425804 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.79□□□□□ -0.2
R3HDM1-205ENST00000425804 HNRNPUL2Q1KMD3 747 aaKnown RBP13.79□□□□□ -0.2
R3HDM1-205ENST00000425804 SAMD1Q6SPF0 538 aaPredicted RBP13.7□□□□□ -0.22
R3HDM1-205ENST00000425804 SP7Q8TDD2 431 aaPredicted RBP13.62□□□□□ -0.23
R3HDM1-205ENST00000425804 KCNA4P22459 653 aa13.59□□□□□ -0.23
R3HDM1-205ENST00000425804 POLA2Q14181 598 aa13.54□□□□□ -0.24
R3HDM1-205ENST00000425804 AKT1S1Q96B36 256 aa13.39□□□□□ -0.27
R3HDM1-205ENST00000425804 PIP4P2Q8N4L2 257 aa13.35□□□□□ -0.27
R3HDM1-205ENST00000425804 MYCNP04198 464 aaPredicted RBP13.33□□□□□ -0.28
R3HDM1-205ENST00000425804 REM2Q8IYK8 340 aaPredicted RBP13.28□□□□□ -0.28
R3HDM1-205ENST00000425804 HAX1O00165 279 aa13.27□□□□□ -0.29
R3HDM1-205ENST00000425804 ZBTB12Q9Y330 459 aaPredicted RBP13.19□□□□□ -0.3
R3HDM1-205ENST00000425804 PITPNM1O00562 1244 aa13.15□□□□□ -0.3
R3HDM1-205ENST00000425804 FXR2P51116 673 aaKnown RBP eCLIP13.15□□□□□ -0.3
R3HDM1-205ENST00000425804 OSCARQ8IYS5 282 aa13.15□□□□□ -0.3
R3HDM1-205ENST00000425804 ATF5Q9Y2D1 282 aaPredicted RBP13.12□□□□□ -0.31
R3HDM1-205ENST00000425804 EVX2Q03828 476 aa13.07□□□□□ -0.32
R3HDM1-205ENST00000425804 FOXD4L1Q9NU39 408 aa12.87□□□□□ -0.35
R3HDM1-205ENST00000425804 PRKAR2AP13861 404 aaKnown RBP12.8□□□□□ -0.36
R3HDM1-205ENST00000425804 LHX8Q68G74 356 aa12.77□□□□□ -0.37
R3HDM1-205ENST00000425804 C19orf67A6NJJ6 358 aa12.75□□□□□ -0.37
R3HDM1-205ENST00000425804 SPDYE2BA6NHP3 402 aa12.74□□□□□ -0.37
R3HDM1-205ENST00000425804 SPDYE6P0CI01 402 aa12.74□□□□□ -0.37
R3HDM1-205ENST00000425804 SPDYE2Q495Y8 402 aa12.74□□□□□ -0.37
R3HDM1-205ENST00000425804 GABBR2O75899 941 aa12.73□□□□□ -0.37
R3HDM1-205ENST00000425804 CLEC11AQ9Y240 323 aa12.71□□□□□ -0.37
R3HDM1-205ENST00000425804 SLC4A1APQ9BWU0 796 aaKnown RBP12.7□□□□□ -0.38
R3HDM1-205ENST00000425804 SPDYE1Q8NFV5 336 aaPredicted RBP12.67□□□□□ -0.38
R3HDM1-205ENST00000425804 FBLN2P98095 1184 aa12.61□□□□□ -0.39
R3HDM1-205ENST00000425804 CHADLQ6NUI6 762 aa12.54□□□□□ -0.4
R3HDM1-205ENST00000425804 ATXN8OSP0DMR3 200 aa12.51□□□□□ -0.41
R3HDM1-205ENST00000425804 SSUH2Q9Y2M2 353 aa12.51□□□□□ -0.41
R3HDM1-205ENST00000425804 ZBTB22O15209 634 aa12.5□□□□□ -0.41
R3HDM1-205ENST00000425804 ZNF692Q9BU19 519 aaPredicted RBP12.5□□□□□ -0.41
R3HDM1-205ENST00000425804 PLSCR2Q9NRY7 297 aa12.5□□□□□ -0.41
R3HDM1-205ENST00000425804 MKRN4PQ13434 485 aaPredicted RBP12.47□□□□□ -0.41
R3HDM1-205ENST00000425804 POTEIP0CG38 1075 aa12.46□□□□□ -0.41
R3HDM1-205ENST00000425804 PRR29P0C7W0 189 aa12.39□□□□□ -0.43
R3HDM1-205ENST00000425804 CD44P16070 742 aaKnown RBP12.36□□□□□ -0.43
R3HDM1-205ENST00000425804 PABPN1Q86U42 306 aaKnown RBP eCLIP12.3□□□□□ -0.44
R3HDM1-205ENST00000425804 FARP1Q9Y4F1 1045 aaPredicted RBP12.27□□□□□ -0.45
R3HDM1-205ENST00000425804 CLCN6P51797 869 aa12.26□□□□□ -0.45
R3HDM1-205ENST00000425804 DCBLD2Q96PD2 775 aa12.25□□□□□ -0.45
R3HDM1-205ENST00000425804 ZNF579Q8NAF0 562 aaKnown RBP12.13□□□□□ -0.47
R3HDM1-205ENST00000425804 OTUD5Q96G74 571 aa12.12□□□□□ -0.47
R3HDM1-205ENST00000425804 ZRANB1Q9UGI0 708 aa12.09□□□□□ -0.47
R3HDM1-205ENST00000425804 POTEMA6NI47 508 aa12.07□□□□□ -0.48
R3HDM1-205ENST00000425804 POTEB2H3BUK9 544 aa12.05□□□□□ -0.48
R3HDM1-205ENST00000425804 GALR2O43603 387 aaPredicted RBP12.05□□□□□ -0.48
R3HDM1-205ENST00000425804 POTEGQ6S5H5 508 aa12.01□□□□□ -0.49
R3HDM1-205ENST00000425804 CREBZFQ9NS37 354 aa11.95□□□□□ -0.5
R3HDM1-205ENST00000425804 PHF12Q96QT6 1004 aa11.88□□□□□ -0.51
R3HDM1-205ENST00000425804 PELP1Q8IZL8 1130 aaKnown RBP11.87□□□□□ -0.51
R3HDM1-205ENST00000425804 PCDH10Q9P2E7 1040 aa11.86□□□□□ -0.51
R3HDM1-205ENST00000425804 PAK3O75914 559 aaPredicted RBP11.83□□□□□ -0.52
R3HDM1-205ENST00000425804 STAG3Q9UJ98 1225 aa11.8□□□□□ -0.52
R3HDM1-205ENST00000425804 METRNQ9UJH8 293 aa11.78□□□□□ -0.52
R3HDM1-205ENST00000425804 POTEJP0CG39 1038 aa11.77□□□□□ -0.53
R3HDM1-205ENST00000425804 ASTLQ6HA08 431 aaPredicted RBP11.74□□□□□ -0.53
R3HDM1-205ENST00000425804 LCE2DQ5TA82 110 aaPredicted RBP11.73□□□□□ -0.53
R3HDM1-205ENST00000425804 SLC39A7Q92504 469 aa11.72□□□□□ -0.53
R3HDM1-205ENST00000425804 C7P10643 843 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms