RNA–Protein interactions for RNA: ENST00000423698.6

ERCC1-204, Transcript of ERCC excision repair 1, endonuclease non-catalytic subunit, humanhuman

TSL 2 BASIC

Gene ERCC1, Length 3,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC1-204ENST00000423698 NISCHQ9Y2I1 1504 aa23.79■■□□□ 1.4
ERCC1-204ENST00000423698 SHROOM4Q9ULL8 1493 aa21.17■□□□□ 0.98
ERCC1-204ENST00000423698 DCAF8L2P0C7V8 631 aa20.82■□□□□ 0.92
ERCC1-204ENST00000423698 SUPT5HO00267 1087 aaKnown RBP20.76■□□□□ 0.91
ERCC1-204ENST00000423698 CCDC180Q9P1Z9 1646 aa20.21■□□□□ 0.83
ERCC1-204ENST00000423698 ZCCHC6Q5VYS8 1495 aaKnown RBP20.04■□□□□ 0.8
ERCC1-204ENST00000423698 CHIC1Q5VXU3 224 aa19.74■□□□□ 0.75
ERCC1-204ENST00000423698 MYO15BQ96JP2 1530 aa19.65■□□□□ 0.74
ERCC1-204ENST00000423698 EHMT2Q96KQ7 1210 aa19.56■□□□□ 0.72
ERCC1-204ENST00000423698 LOC105371045A0A1W2PR82 267 aa19.55■□□□□ 0.72
ERCC1-204ENST00000423698 PCGF6Q9BYE7 350 aa19.49■□□□□ 0.71
ERCC1-204ENST00000423698 PPARGC1BQ86YN6 1023 aaKnown RBP19.43■□□□□ 0.7
ERCC1-204ENST00000423698 ABCC9O60706 1549 aa19.43■□□□□ 0.7
ERCC1-204ENST00000423698 HRCP23327 699 aa19.39■□□□□ 0.69
ERCC1-204ENST00000423698 DCAF1Q9Y4B6 1507 aa19.35■□□□□ 0.69
ERCC1-204ENST00000423698 PELP1Q8IZL8 1130 aaKnown RBP19.35■□□□□ 0.69
ERCC1-204ENST00000423698 FAM9AQ8IZU1 332 aaPredicted RBP19.35■□□□□ 0.69
ERCC1-204ENST00000423698 SCRIBQ14160 1630 aa19.2■□□□□ 0.66
ERCC1-204ENST00000423698 MYT1Q01538 1121 aa19.04■□□□□ 0.64
ERCC1-204ENST00000423698 TRIM41Q8WV44 630 aa19.04■□□□□ 0.64
ERCC1-204ENST00000423698 RSF1Q96T23 1441 aaPredicted RBP18.92■□□□□ 0.62
ERCC1-204ENST00000423698 TTBK1Q5TCY1 1321 aaPredicted RBP18.84■□□□□ 0.61
ERCC1-204ENST00000423698 CECR2Q9BXF3 1484 aa18.83■□□□□ 0.6
ERCC1-204ENST00000423698 NACADO15069 1562 aa18.82■□□□□ 0.6
ERCC1-204ENST00000423698 RB1CC1Q8TDY2 1594 aa18.77■□□□□ 0.6
ERCC1-204ENST00000423698 PABPN1Q86U42 306 aaKnown RBP eCLIP18.76■□□□□ 0.59
ERCC1-204ENST00000423698 TRIM26Q12899 539 aaPredicted RBP18.69■□□□□ 0.58
ERCC1-204ENST00000423698 MROH2BQ7Z745 1585 aa18.62■□□□□ 0.57
ERCC1-204ENST00000423698 SCAF1Q9H7N4 1312 aaKnown RBP18.62■□□□□ 0.57
ERCC1-204ENST00000423698 WIZO95785 1651 aa18.52■□□□□ 0.56
ERCC1-204ENST00000423698 RANGAP1P46060 587 aaPredicted RBP18.43■□□□□ 0.54
ERCC1-204ENST00000423698 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.38■□□□□ 0.53
ERCC1-204ENST00000423698 BAZ1AQ9NRL2 1556 aaPredicted RBP18.3■□□□□ 0.52
ERCC1-204ENST00000423698 ABCC8Q09428 1581 aa18.29■□□□□ 0.52
ERCC1-204ENST00000423698 UBTFP17480 764 aaKnown RBP18.28■□□□□ 0.52
ERCC1-204ENST00000423698 UNC13AQ9UPW8 1703 aa18.27■□□□□ 0.52
ERCC1-204ENST00000423698 CCER1Q8TC90 406 aaPredicted RBP18.22■□□□□ 0.51
ERCC1-204ENST00000423698 CCDC88BA6NC98 1476 aa18.19■□□□□ 0.5
ERCC1-204ENST00000423698 SMARCA4P51532 1647 aa18.17■□□□□ 0.5
ERCC1-204ENST00000423698 SOGA1O94964 1423 aa18.16■□□□□ 0.5
ERCC1-204ENST00000423698 RUSC2Q8N2Y8 1516 aa18.11■□□□□ 0.49
ERCC1-204ENST00000423698 BICRAQ9NZM4 1560 aa18.09■□□□□ 0.49
ERCC1-204ENST00000423698 NEUROD1Q13562 356 aa18.08■□□□□ 0.49
ERCC1-204ENST00000423698 TOP2AP11388 1531 aaKnown RBP18.08■□□□□ 0.48
ERCC1-204ENST00000423698 ZEB1P37275 1124 aaPredicted RBP18.05■□□□□ 0.48
ERCC1-204ENST00000423698 GTF3C3Q9Y5Q9 886 aa18.03■□□□□ 0.48
ERCC1-204ENST00000423698 CSRNP3Q8WYN3 585 aa18.02■□□□□ 0.47
ERCC1-204ENST00000423698 HNRNPUL2Q1KMD3 747 aaKnown RBP18■□□□□ 0.47
ERCC1-204ENST00000423698 SMARCA2P51531 1590 aa17.99■□□□□ 0.47
ERCC1-204ENST00000423698 ACIN1Q9UKV3 1341 aaKnown RBP17.98■□□□□ 0.47
ERCC1-204ENST00000423698 CEP162Q5TB80 1403 aa17.94■□□□□ 0.46
ERCC1-204ENST00000423698 EIF4G1Q04637 1599 aaKnown RBP17.91■□□□□ 0.46
ERCC1-204ENST00000423698 BAZ1BQ9UIG0 1483 aaKnown RBP17.82■□□□□ 0.44
ERCC1-204ENST00000423698 WRNQ14191 1432 aaPredicted RBP eCLIP17.81■□□□□ 0.441e-323■■■■■ 49.5
ERCC1-204ENST00000423698 ATAD2BQ9ULI0 1458 aa17.81■□□□□ 0.44
ERCC1-204ENST00000423698 YTHDC1Q96MU7 727 aaKnown RBP17.78■□□□□ 0.44
ERCC1-204ENST00000423698 APLP2Q06481 763 aa17.75■□□□□ 0.43
ERCC1-204ENST00000423698 DIEXFQ68CQ4 756 aaKnown RBP17.73■□□□□ 0.43
ERCC1-204ENST00000423698 TNIKQ9UKE5 1360 aa17.73■□□□□ 0.43
ERCC1-204ENST00000423698 ITGAEP38570 1179 aa17.7■□□□□ 0.42
ERCC1-204ENST00000423698 PEG3Q9GZU2 1588 aa17.69■□□□□ 0.42
ERCC1-204ENST00000423698 CENPBP07199 599 aaPredicted RBP17.69■□□□□ 0.42
ERCC1-204ENST00000423698 SYNJ1O43426 1573 aa17.67■□□□□ 0.42
ERCC1-204ENST00000423698 GOLGA3Q08378 1498 aa17.64■□□□□ 0.42
ERCC1-204ENST00000423698 CLIP1P30622 1438 aa17.63■□□□□ 0.41
ERCC1-204ENST00000423698 RAPGEF2Q9Y4G8 1499 aa17.62■□□□□ 0.41
ERCC1-204ENST00000423698 ATP1B4Q9UN42 357 aaPredicted RBP17.58■□□□□ 0.41
ERCC1-204ENST00000423698 PRKCSHP14314 528 aaPredicted RBP17.54■□□□□ 0.4
ERCC1-204ENST00000423698 P3H3Q8IVL6 736 aa17.53■□□□□ 0.4
ERCC1-204ENST00000423698 KANK4Q5T7N3 995 aaPredicted RBP17.52■□□□□ 0.4
ERCC1-204ENST00000423698 EEA1Q15075 1411 aa17.51■□□□□ 0.39
ERCC1-204ENST00000423698 CEP164Q9UPV0 1460 aa17.5■□□□□ 0.39
ERCC1-204ENST00000423698 ZNF316A6NFI3 1004 aaPredicted RBP17.46■□□□□ 0.39
ERCC1-204ENST00000423698 DNAJC5BQ9UF47 199 aa17.46■□□□□ 0.39
ERCC1-204ENST00000423698 NCAPD3P42695 1498 aa17.44■□□□□ 0.38
ERCC1-204ENST00000423698 MIER1Q8N108 512 aa17.43■□□□□ 0.38
ERCC1-204ENST00000423698 VPS8Q8N3P4 1428 aa17.39■□□□□ 0.37
ERCC1-204ENST00000423698 HMGXB3Q12766 1538 aa17.38■□□□□ 0.37
ERCC1-204ENST00000423698 KIF21BO75037 1637 aa17.33■□□□□ 0.36
ERCC1-204ENST00000423698 TOP2BQ02880 1626 aa17.31■□□□□ 0.36
ERCC1-204ENST00000423698 ERICH6Q7L0X2 663 aa17.3■□□□□ 0.36
ERCC1-204ENST00000423698 BCL11AQ9H165 835 aa17.28■□□□□ 0.36
ERCC1-204ENST00000423698 CUX1P39880 1505 aa17.28■□□□□ 0.36
ERCC1-204ENST00000423698 FAM50AQ14320 339 aaKnown RBP17.27■□□□□ 0.36
ERCC1-204ENST00000423698 CFTRP13569 1480 aa17.25■□□□□ 0.35
ERCC1-204ENST00000423698 ARAP1Q96P48 1450 aa17.25■□□□□ 0.35
ERCC1-204ENST00000423698 CC2D2AQ9P2K1 1620 aa17.23■□□□□ 0.35
ERCC1-204ENST00000423698 KIF27Q86VH2 1401 aa17.22■□□□□ 0.35
ERCC1-204ENST00000423698 CUX2O14529 1486 aa17.22■□□□□ 0.35
ERCC1-204ENST00000423698 NESP48681 1621 aa17.21■□□□□ 0.35
ERCC1-204ENST00000423698 HIRIP3Q9BW71 556 aaPredicted RBP17.21■□□□□ 0.34
ERCC1-204ENST00000423698 BIVM-ERCC5R4GMW8 1640 aa17.2■□□□□ 0.34
ERCC1-204ENST00000423698 ARID3CA6NKF2 412 aa17.19■□□□□ 0.34
ERCC1-204ENST00000423698 CADPSQ9ULU8 1353 aa17.18■□□□□ 0.34
ERCC1-204ENST00000423698 PRXQ9BXM0 1461 aa17.15■□□□□ 0.34
ERCC1-204ENST00000423698 SIN3AQ96ST3 1273 aa17.12■□□□□ 0.33
ERCC1-204ENST00000423698 DHX57Q6P158 1386 aaKnown RBP17.11■□□□□ 0.33
ERCC1-204ENST00000423698 IGF1RP08069 1367 aa17.11■□□□□ 0.33
ERCC1-204ENST00000423698 CARMIL1Q5VZK9 1371 aa17.09■□□□□ 0.33
ERCC1-204ENST00000423698 ARHGAP35Q9NRY4 1499 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms