RNA–Protein interactions for RNA: ENST00000417628.6

ECHDC1-206, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 767 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-206ENST00000417628 AEBP2Q6ZN18 517 aaPredicted RBP18.08■□□□□ 0.48
ECHDC1-206ENST00000417628 CHIC1Q5VXU3 224 aa18.06■□□□□ 0.48
ECHDC1-206ENST00000417628 PHF23Q9BUL5 403 aaPredicted RBP15.98■□□□□ 0.15
ECHDC1-206ENST00000417628 SENP3Q9H4L4 574 aaPredicted RBP15.19■□□□□ 0.02
ECHDC1-206ENST00000417628 PLPPR3Q6T4P5 718 aa14.82□□□□□ -0.04
ECHDC1-206ENST00000417628 FOXD1Q16676 465 aa14.08□□□□□ -0.16
ECHDC1-206ENST00000417628 NISCHQ9Y2I1 1504 aa13.97□□□□□ -0.17
ECHDC1-206ENST00000417628 ADRA2BP18089 450 aa13.96□□□□□ -0.17
ECHDC1-206ENST00000417628 PPP6R1Q9UPN7 881 aa13.96□□□□□ -0.17
ECHDC1-206ENST00000417628 ABCC9O60706 1549 aa13.86□□□□□ -0.19
ECHDC1-206ENST00000417628 DNAJC5BQ9UF47 199 aa13.77□□□□□ -0.21
ECHDC1-206ENST00000417628 KCNA4P22459 653 aa13.4□□□□□ -0.26
ECHDC1-206ENST00000417628 DNAJC5Q9H3Z4 198 aa13.38□□□□□ -0.27
ECHDC1-206ENST00000417628 PIAS4Q8N2W9 510 aaPredicted RBP13.35□□□□□ -0.27
ECHDC1-206ENST00000417628 PPP4R3CPQ6ZMV5 832 aa13.15□□□□□ -0.3
ECHDC1-206ENST00000417628 CCDC180Q9P1Z9 1646 aa12.99□□□□□ -0.33
ECHDC1-206ENST00000417628 EHMT2Q96KQ7 1210 aa12.97□□□□□ -0.33
ECHDC1-206ENST00000417628 MSH5O43196 834 aa12.94□□□□□ -0.34
ECHDC1-206ENST00000417628 NCBP3Q53F19 620 aaKnown RBP12.88□□□□□ -0.35
ECHDC1-206ENST00000417628 RB1CC1Q8TDY2 1594 aa12.81□□□□□ -0.36
ECHDC1-206ENST00000417628 SLC4A1APQ9BWU0 796 aaKnown RBP12.8□□□□□ -0.36
ECHDC1-206ENST00000417628 NPM3O75607 178 aaKnown RBP12.76□□□□□ -0.37
ECHDC1-206ENST00000417628 PABPN1Q86U42 306 aaKnown RBP eCLIP12.71□□□□□ -0.37
ECHDC1-206ENST00000417628 CNKSR2Q8WXI2 1034 aa12.66□□□□□ -0.38
ECHDC1-206ENST00000417628 SCAF1Q9H7N4 1312 aaKnown RBP12.65□□□□□ -0.38
ECHDC1-206ENST00000417628 CSRNP3Q8WYN3 585 aa12.65□□□□□ -0.38
ECHDC1-206ENST00000417628 CECR2Q9BXF3 1484 aa12.6□□□□□ -0.39
ECHDC1-206ENST00000417628 MAPK8IP2Q13387 824 aaPredicted RBP12.53□□□□□ -0.4
ECHDC1-206ENST00000417628 NACADO15069 1562 aa12.49□□□□□ -0.41
ECHDC1-206ENST00000417628 CC2D2AQ9P2K1 1620 aa12.48□□□□□ -0.41
ECHDC1-206ENST00000417628 BICRAQ9NZM4 1560 aa12.44□□□□□ -0.42
ECHDC1-206ENST00000417628 UNC13AQ9UPW8 1703 aa12.44□□□□□ -0.42
ECHDC1-206ENST00000417628 TRIM41Q8WV44 630 aa12.4□□□□□ -0.42
ECHDC1-206ENST00000417628 CUX2O14529 1486 aa12.39□□□□□ -0.43
ECHDC1-206ENST00000417628 ZBTB22O15209 634 aa12.37□□□□□ -0.43
ECHDC1-206ENST00000417628 RNF216Q9NWF9 866 aaPredicted RBP12.3□□□□□ -0.44
ECHDC1-206ENST00000417628 SHROOM4Q9ULL8 1493 aa12.27□□□□□ -0.45
ECHDC1-206ENST00000417628 EIF4G1Q04637 1599 aaKnown RBP12.24□□□□□ -0.45
ECHDC1-206ENST00000417628 DMRT2Q9Y5R5 561 aa12.22□□□□□ -0.45
ECHDC1-206ENST00000417628 HOXD11P31277 338 aaPredicted RBP12.15□□□□□ -0.46
ECHDC1-206ENST00000417628 FOXD4L1Q9NU39 408 aa12.15□□□□□ -0.46
ECHDC1-206ENST00000417628 DCAF8L2P0C7V8 631 aa12.13□□□□□ -0.47
ECHDC1-206ENST00000417628 ERCC6Q03468 1493 aa12.08□□□□□ -0.48
ECHDC1-206ENST00000417628 MYO15BQ96JP2 1530 aa12.02□□□□□ -0.48
ECHDC1-206ENST00000417628 SLC4A2P04920 1241 aa11.97□□□□□ -0.49
ECHDC1-206ENST00000417628 SCRIBQ14160 1630 aa11.78□□□□□ -0.52
ECHDC1-206ENST00000417628 THOC2Q8NI27 1593 aaKnown RBP11.75□□□□□ -0.53
ECHDC1-206ENST00000417628 MYCNP04198 464 aaPredicted RBP11.74□□□□□ -0.53
ECHDC1-206ENST00000417628 ATXN8OSP0DMR3 200 aa11.68□□□□□ -0.54
ECHDC1-206ENST00000417628 DCAF8L1A6NGE4 600 aa11.66□□□□□ -0.54
ECHDC1-206ENST00000417628 NESP48681 1621 aa11.63□□□□□ -0.55
ECHDC1-206ENST00000417628 BAZ1AQ9NRL2 1556 aaPredicted RBP11.62□□□□□ -0.55
ECHDC1-206ENST00000417628 ILDR1Q86SU0 546 aaPredicted RBP11.61□□□□□ -0.55
ECHDC1-206ENST00000417628 POTEDQ86YR6 584 aa11.61□□□□□ -0.55
ECHDC1-206ENST00000417628 OSCARQ8IYS5 282 aa11.59□□□□□ -0.55
ECHDC1-206ENST00000417628 SMARCA2P51531 1590 aa11.58□□□□□ -0.55
ECHDC1-206ENST00000417628 RIMBP3CA6NJZ7 1639 aa11.58□□□□□ -0.56
ECHDC1-206ENST00000417628 RIMBP3BA6NNM3 1639 aa11.58□□□□□ -0.56
ECHDC1-206ENST00000417628 RIMBP3Q9UFD9 1639 aa11.58□□□□□ -0.56
ECHDC1-206ENST00000417628 TRHP20396 242 aaPredicted RBP11.57□□□□□ -0.56
ECHDC1-206ENST00000417628 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.54□□□□□ -0.561e-7■■□□□ 13.9
ECHDC1-206ENST00000417628 NCAPD3P42695 1498 aa11.52□□□□□ -0.56
ECHDC1-206ENST00000417628 DCAF1Q9Y4B6 1507 aa11.51□□□□□ -0.57
ECHDC1-206ENST00000417628 ATF5Q9Y2D1 282 aaPredicted RBP11.48□□□□□ -0.57
ECHDC1-206ENST00000417628 ARHGEF11O15085 1522 aa11.46□□□□□ -0.57
ECHDC1-206ENST00000417628 U3KPZ7 1027 aaPredicted RBP11.46□□□□□ -0.57
ECHDC1-206ENST00000417628 KIF21AQ7Z4S6 1674 aa11.45□□□□□ -0.58
ECHDC1-206ENST00000417628 LAMC3Q9Y6N6 1575 aa11.43□□□□□ -0.58
ECHDC1-206ENST00000417628 ZCCHC6Q5VYS8 1495 aaKnown RBP11.41□□□□□ -0.58
ECHDC1-206ENST00000417628 PDS5BQ9NTI5 1447 aa11.4□□□□□ -0.58
ECHDC1-206ENST00000417628 HMGXB3Q12766 1538 aa11.4□□□□□ -0.59
ECHDC1-206ENST00000417628 SAMD1Q6SPF0 538 aaPredicted RBP11.38□□□□□ -0.59
ECHDC1-206ENST00000417628 WDR62O43379 1518 aa11.38□□□□□ -0.59
ECHDC1-206ENST00000417628 MRC2Q9UBG0 1479 aa11.38□□□□□ -0.59
ECHDC1-206ENST00000417628 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.37□□□□□ -0.59
ECHDC1-206ENST00000417628 HNRNPUL2Q1KMD3 747 aaKnown RBP11.37□□□□□ -0.59
ECHDC1-206ENST00000417628 FKBP8Q14318 412 aa11.36□□□□□ -0.59
ECHDC1-206ENST00000417628 CYB5RLQ6IPT4 315 aa11.36□□□□□ -0.59
ECHDC1-206ENST00000417628 ATAD2BQ9ULI0 1458 aa11.35□□□□□ -0.59
ECHDC1-206ENST00000417628 ARAP1Q96P48 1450 aa11.29□□□□□ -0.6
ECHDC1-206ENST00000417628 BAZ1BQ9UIG0 1483 aaKnown RBP11.22□□□□□ -0.61
ECHDC1-206ENST00000417628 RTN4Q9NQC3 1192 aaKnown RBP11.19□□□□□ -0.62
ECHDC1-206ENST00000417628 ZNF219Q9P2Y4 722 aaPredicted RBP11.18□□□□□ -0.62
ECHDC1-206ENST00000417628 CEP164Q9UPV0 1460 aa11.13□□□□□ -0.63
ECHDC1-206ENST00000417628 AMER1Q5JTC6 1135 aaPredicted RBP11.13□□□□□ -0.63
ECHDC1-206ENST00000417628 APLP2Q06481 763 aa11.12□□□□□ -0.63
ECHDC1-206ENST00000417628 CADPSQ9ULU8 1353 aa11.12□□□□□ -0.63
ECHDC1-206ENST00000417628 RSF1Q96T23 1441 aaPredicted RBP11.11□□□□□ -0.63
ECHDC1-206ENST00000417628 SMARCA4P51532 1647 aa11.11□□□□□ -0.63
ECHDC1-206ENST00000417628 RNF39Q9H2S5 420 aa11.1□□□□□ -0.63
ECHDC1-206ENST00000417628 LMTK3Q96Q04 1460 aa11.02□□□□□ -0.65
ECHDC1-206ENST00000417628 FANCD2Q9BXW9 1451 aa11.02□□□□□ -0.65
ECHDC1-206ENST00000417628 PEG3Q9GZU2 1588 aa11.02□□□□□ -0.65
ECHDC1-206ENST00000417628 SPINK5Q9NQ38 1064 aaPredicted RBP11.01□□□□□ -0.65
ECHDC1-206ENST00000417628 ERCC6L2Q5T890 1561 aa11□□□□□ -0.65
ECHDC1-206ENST00000417628 MKRN4PQ13434 485 aaPredicted RBP10.99□□□□□ -0.65
ECHDC1-206ENST00000417628 FBXO41Q8TF61 875 aa10.99□□□□□ -0.65
ECHDC1-206ENST00000417628 ZNF608Q9ULD9 1512 aaPredicted RBP10.99□□□□□ -0.65
ECHDC1-206ENST00000417628 KDM4FA0A1W2PPD8 638 aa10.98□□□□□ -0.65
ECHDC1-206ENST00000417628 URB2Q14146 1524 aaKnown RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 6.2 ms