RNA–Protein interactions for RNA: ENST00000415828.5

CSTF1-202, Transcript of cleavage stimulation factor subunit 1, humanhuman

TSL 2

Gene CSTF1, Length 1,236 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF1-202ENST00000415828 AEBP2Q6ZN18 517 aaPredicted RBP26.11■■□□□ 1.77
CSTF1-202ENST00000415828 CHIC1Q5VXU3 224 aa25.06■■□□□ 1.6
CSTF1-202ENST00000415828 SENP3Q9H4L4 574 aaPredicted RBP22.18■■□□□ 1.14
CSTF1-202ENST00000415828 PHF23Q9BUL5 403 aaPredicted RBP22.01■■□□□ 1.11
CSTF1-202ENST00000415828 FOXD1Q16676 465 aa20.67■□□□□ 0.9
CSTF1-202ENST00000415828 PLPPR3Q6T4P5 718 aa20.16■□□□□ 0.82
CSTF1-202ENST00000415828 POTEDQ86YR6 584 aa19.62■□□□□ 0.73
CSTF1-202ENST00000415828 PPP6R1Q9UPN7 881 aa19.58■□□□□ 0.72
CSTF1-202ENST00000415828 ADRA2BP18089 450 aa19.54■□□□□ 0.72
CSTF1-202ENST00000415828 PIAS4Q8N2W9 510 aaPredicted RBP19.4■□□□□ 0.7
CSTF1-202ENST00000415828 MSH5O43196 834 aa19.2■□□□□ 0.66
CSTF1-202ENST00000415828 MAPK8IP2Q13387 824 aaPredicted RBP17.87■□□□□ 0.45
CSTF1-202ENST00000415828 SCAF1Q9H7N4 1312 aaKnown RBP17.84■□□□□ 0.45
CSTF1-202ENST00000415828 PPP4R3CPQ6ZMV5 832 aa17.73■□□□□ 0.43
CSTF1-202ENST00000415828 DMRT2Q9Y5R5 561 aa17.64■□□□□ 0.41
CSTF1-202ENST00000415828 CNKSR2Q8WXI2 1034 aa17.31■□□□□ 0.36
CSTF1-202ENST00000415828 NCBP3Q53F19 620 aaKnown RBP17.12■□□□□ 0.33
CSTF1-202ENST00000415828 HOXD11P31277 338 aaPredicted RBP17.11■□□□□ 0.33
CSTF1-202ENST00000415828 RNF216Q9NWF9 866 aaPredicted RBP17.07■□□□□ 0.32
CSTF1-202ENST00000415828 DCAF8L1A6NGE4 600 aa16.97■□□□□ 0.31
CSTF1-202ENST00000415828 NPM3O75607 178 aaKnown RBP16.89■□□□□ 0.29
CSTF1-202ENST00000415828 KCNA4P22459 653 aa16.86■□□□□ 0.29
CSTF1-202ENST00000415828 CACNB1Q02641 598 aaPredicted RBP16.57■□□□□ 0.24
CSTF1-202ENST00000415828 RNF39Q9H2S5 420 aa16.42■□□□□ 0.22
CSTF1-202ENST00000415828 DNAJC5BQ9UF47 199 aa16.41■□□□□ 0.22
CSTF1-202ENST00000415828 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.34■□□□□ 0.214e-7■■■■□ 22.7
CSTF1-202ENST00000415828 C1QBPQ07021 282 aaKnown RBP16.18■□□□□ 0.18
CSTF1-202ENST00000415828 SLC4A2P04920 1241 aa16.05■□□□□ 0.16
CSTF1-202ENST00000415828 U3KPZ7 1027 aaPredicted RBP16.02■□□□□ 0.16
CSTF1-202ENST00000415828 SLC4A1APQ9BWU0 796 aaKnown RBP15.97■□□□□ 0.15
CSTF1-202ENST00000415828 SPINK5Q9NQ38 1064 aaPredicted RBP15.72■□□□□ 0.11
CSTF1-202ENST00000415828 CAPN15O75808 1086 aa15.68■□□□□ 0.1
CSTF1-202ENST00000415828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.64■□□□□ 0.09
CSTF1-202ENST00000415828 HNRNPUL2Q1KMD3 747 aaKnown RBP15.64■□□□□ 0.09
CSTF1-202ENST00000415828 FOXD4L1Q9NU39 408 aa15.61■□□□□ 0.09
CSTF1-202ENST00000415828 MYCNP04198 464 aaPredicted RBP15.6■□□□□ 0.09
CSTF1-202ENST00000415828 APLP2Q06481 763 aa15.57■□□□□ 0.08
CSTF1-202ENST00000415828 SAMD1Q6SPF0 538 aaPredicted RBP15.57■□□□□ 0.08
CSTF1-202ENST00000415828 ZBTB22O15209 634 aa15.51■□□□□ 0.07
CSTF1-202ENST00000415828 TRHP20396 242 aaPredicted RBP15.51■□□□□ 0.07
CSTF1-202ENST00000415828 DSG3P32926 999 aa15.49■□□□□ 0.07
CSTF1-202ENST00000415828 ZNF219Q9P2Y4 722 aaPredicted RBP15.45■□□□□ 0.06
CSTF1-202ENST00000415828 ABCB7O75027 752 aa15.36■□□□□ 0.05
CSTF1-202ENST00000415828 ATF5Q9Y2D1 282 aaPredicted RBP15.26■□□□□ 0.03
CSTF1-202ENST00000415828 POTEHQ6S545 545 aa15.21■□□□□ 0.03
CSTF1-202ENST00000415828 POLA2Q14181 598 aa15.15■□□□□ 0.02
CSTF1-202ENST00000415828 EHMT2Q96KQ7 1210 aa15.1■□□□□ 0.01
CSTF1-202ENST00000415828 ATXN8OSP0DMR3 200 aa15.07■□□□□ 0
CSTF1-202ENST00000415828 CSRNP3Q8WYN3 585 aa15.06■□□□□ 0
CSTF1-202ENST00000415828 ZBTB12Q9Y330 459 aaPredicted RBP14.82□□□□□ -0.04
CSTF1-202ENST00000415828 RBM42Q9BTD8 480 aaKnown RBP14.75□□□□□ -0.05
CSTF1-202ENST00000415828 OSCARQ8IYS5 282 aa14.66□□□□□ -0.06
CSTF1-202ENST00000415828 FBLN2P98095 1184 aa14.61□□□□□ -0.07
CSTF1-202ENST00000415828 MKRN4PQ13434 485 aaPredicted RBP14.55□□□□□ -0.08
CSTF1-202ENST00000415828 AKT1S1Q96B36 256 aa14.48□□□□□ -0.09
CSTF1-202ENST00000415828 SPDYE2BA6NHP3 402 aa14.39□□□□□ -0.11
CSTF1-202ENST00000415828 SPDYE6P0CI01 402 aa14.39□□□□□ -0.11
CSTF1-202ENST00000415828 SPDYE2Q495Y8 402 aa14.39□□□□□ -0.11
CSTF1-202ENST00000415828 REM2Q8IYK8 340 aaPredicted RBP14.36□□□□□ -0.11
CSTF1-202ENST00000415828 CHRDL2Q6WN34 429 aa14.33□□□□□ -0.12
CSTF1-202ENST00000415828 ZNF692Q9BU19 519 aaPredicted RBP14.31□□□□□ -0.12
CSTF1-202ENST00000415828 SSUH2Q9Y2M2 353 aa14.24□□□□□ -0.13
CSTF1-202ENST00000415828 PITPNM1O00562 1244 aa14.22□□□□□ -0.13
CSTF1-202ENST00000415828 PABPN1Q86U42 306 aaKnown RBP eCLIP14.1□□□□□ -0.15
CSTF1-202ENST00000415828 CLEC11AQ9Y240 323 aa14.09□□□□□ -0.15
CSTF1-202ENST00000415828 SPDYE1Q8NFV5 336 aaPredicted RBP14.08□□□□□ -0.16
CSTF1-202ENST00000415828 PIP4P2Q8N4L2 257 aa14.06□□□□□ -0.16
CSTF1-202ENST00000415828 SPDYE4A6NLX3 237 aa14.02□□□□□ -0.17
CSTF1-202ENST00000415828 FXR2P51116 673 aaKnown RBP eCLIP14.01□□□□□ -0.17
CSTF1-202ENST00000415828 SP7Q8TDD2 431 aaPredicted RBP13.91□□□□□ -0.18
CSTF1-202ENST00000415828 PRR29P0C7W0 189 aa13.88□□□□□ -0.19
CSTF1-202ENST00000415828 PRKAR2AP13861 404 aaKnown RBP13.86□□□□□ -0.19
CSTF1-202ENST00000415828 CHADLQ6NUI6 762 aa13.8□□□□□ -0.2
CSTF1-202ENST00000415828 STAG3Q9UJ98 1225 aa13.75□□□□□ -0.21
CSTF1-202ENST00000415828 HAX1O00165 279 aa13.74□□□□□ -0.21
CSTF1-202ENST00000415828 PROM2Q8N271 834 aa13.69□□□□□ -0.22
CSTF1-202ENST00000415828 FKBP8Q14318 412 aa13.65□□□□□ -0.22
CSTF1-202ENST00000415828 EVX2Q03828 476 aa13.6□□□□□ -0.23
CSTF1-202ENST00000415828 CREBZFQ9NS37 354 aa13.6□□□□□ -0.23
CSTF1-202ENST00000415828 FARP1Q9Y4F1 1045 aaPredicted RBP13.58□□□□□ -0.24
CSTF1-202ENST00000415828 C19orf67A6NJJ6 358 aa13.55□□□□□ -0.24
CSTF1-202ENST00000415828 CD44P16070 742 aaKnown RBP13.43□□□□□ -0.26
CSTF1-202ENST00000415828 MNX1P50219 401 aaPredicted RBP13.4□□□□□ -0.26
CSTF1-202ENST00000415828 ABCC9O60706 1549 aa13.36□□□□□ -0.27
CSTF1-202ENST00000415828 MIER1Q8N108 512 aa13.36□□□□□ -0.27
CSTF1-202ENST00000415828 NPM1P06748 294 aaKnown RBP eCLIP13.34□□□□□ -0.27
CSTF1-202ENST00000415828 GABBR2O75899 941 aa13.3□□□□□ -0.28
CSTF1-202ENST00000415828 ZRANB1Q9UGI0 708 aa13.3□□□□□ -0.28
CSTF1-202ENST00000415828 PLEKHG5O94827 1062 aa13.29□□□□□ -0.28
CSTF1-202ENST00000415828 PLCD3Q8N3E9 789 aa13.29□□□□□ -0.28
CSTF1-202ENST00000415828 FBXO3Q9UK99 471 aa13.25□□□□□ -0.29
CSTF1-202ENST00000415828 PAK3O75914 559 aaPredicted RBP13.24□□□□□ -0.29
CSTF1-202ENST00000415828 ZNF579Q8NAF0 562 aaKnown RBP13.21□□□□□ -0.29
CSTF1-202ENST00000415828 NISCHQ9Y2I1 1504 aa13.18□□□□□ -0.3
CSTF1-202ENST00000415828 TSPYL2Q9H2G4 693 aaPredicted RBP13.15□□□□□ -0.3
CSTF1-202ENST00000415828 PHF12Q96QT6 1004 aa13.14□□□□□ -0.31
CSTF1-202ENST00000415828 CLCN6P51797 869 aa13.13□□□□□ -0.31
CSTF1-202ENST00000415828 ZBTB47Q9UFB7 747 aaPredicted RBP13.13□□□□□ -0.31
CSTF1-202ENST00000415828 RASEFQ8IZ41 740 aa13.1□□□□□ -0.31
CSTF1-202ENST00000415828 VASPP50552 380 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms